| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is czcD [H]
Identifier: 238023811
GI number: 238023811
Start: 410864
End: 411910
Strand: Direct
Name: czcD [H]
Synonym: bglu_2g03490
Alternate gene names: 238023811
Gene position: 410864-411910 (Clockwise)
Preceding gene: 238023810
Following gene: 238023812
Centisome position: 14.53
GC content: 69.63
Gene sequence:
>1047_bases ATGAACGAAACATTGGGCATGAAGTCCGGACCTGTACGGCACGAGCATGTGTTTCTCGGCGCCGAGCATGCGAGCCGCGA GCGGCGCACCTGGTTCGTGATCGCGCTCTGCGCGTTGACCATGCTGGCCGAGATCGCGGGCGGCTGGCGCTTCGGTTCGC TGGCGCTCGTCGCCGACGGCCTGCACATGTCGACGCATGCCGGCGCGATGCTGATCGCCGCGCTCGCTTATACCTACGCG CGGCGCCATGCGCACGATTCGCGCTTCTCGTTCGGTACCGGCAAGCTTGGCGATCTGGCCGGTTTCACGAGCGCCGTCGC GCTCGCGCTGATCGCGGTGCTGATCGGCTATGAAGCCGTCACGCGGCTGGTCGAGCCGGTGCCGATCCGGTTCGGCGAGG CGATTCCGATCGCCGTGTTCGGGCTCGCCGTCAATCTCAGCTGCGCCTGGCTGCTCGGCGGCGCCCACCATGGCCATGCG CATGGCGGCCACGATCATCACGATGGTCACGATCACGCGCCGGAGCGGCATCAGGCCGATGCGGCGCATCGGCACGATCA TGCGGACGCCGCCGCGCATCACGGCGCCCACGGCCAGCAGGCGTTTCACGCGCGCGATCACAATTTCCGCGCTGCGTATC TGCACGTGATCGGCGATGCCGTGGTGTCGGTGCTCGCGATCGCAGGGCTGATCGCCGCGCGCGCGTTCGGCTGGAACTGG ATGGACCCGCTGGCCGGCATCGTCGGCGCGCTGGTGATCGCCAACTGGTCGTTCGTGCTGATCCGCGACACCGGCGCGAC GCTGCTCGACATGACGCCCGACCCCGCGCTCGCGGCGCGAATCCGCGAGCGGATCGAGGGCGACGGCGATGCGGTCGTCG ATCTGCACCTCTGGCGTCTCGGCCCCGGCCATCTGAGCGCCGCGCTGTCGGTCGCCACCGGCAGCGCGAGCCGCGATGCG CGCTTCTATCACCAGCGGCTGGCCGGCGTCGACGGCCTGTCGCACCTGACCGTCGAGGTCATGCCGGCGGCCGCGCCGCG CAGCTAA
Upstream 100 bases:
>100_bases GACGCGCCGGCGTTCCAACCTGACGAGGCCGGCGGCAGGGCGACCGAGCAACTGATCGAGGTCGTCCACAGTTACTTCAA GTAAGGAGAGGGGAAGTGCG
Downstream 100 bases:
>100_bases GAGAGCATGGCGCCGCGTCCCGCCCCGTGGCTCCGGCCGCCGCCGCGCCCGCTTCGGGCCGCGCCGCGGTCGGCTCGCCG GCCTTCGTCATGAGCGGGCA
Product: Cation diffusion facilitator family transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 348; Mature: 348
Protein sequence:
>348_residues MNETLGMKSGPVRHEHVFLGAEHASRERRTWFVIALCALTMLAEIAGGWRFGSLALVADGLHMSTHAGAMLIAALAYTYA RRHAHDSRFSFGTGKLGDLAGFTSAVALALIAVLIGYEAVTRLVEPVPIRFGEAIPIAVFGLAVNLSCAWLLGGAHHGHA HGGHDHHDGHDHAPERHQADAAHRHDHADAAAHHGAHGQQAFHARDHNFRAAYLHVIGDAVVSVLAIAGLIAARAFGWNW MDPLAGIVGALVIANWSFVLIRDTGATLLDMTPDPALAARIRERIEGDGDAVVDLHLWRLGPGHLSAALSVATGSASRDA RFYHQRLAGVDGLSHLTVEVMPAAAPRS
Sequences:
>Translated_348_residues MNETLGMKSGPVRHEHVFLGAEHASRERRTWFVIALCALTMLAEIAGGWRFGSLALVADGLHMSTHAGAMLIAALAYTYA RRHAHDSRFSFGTGKLGDLAGFTSAVALALIAVLIGYEAVTRLVEPVPIRFGEAIPIAVFGLAVNLSCAWLLGGAHHGHA HGGHDHHDGHDHAPERHQADAAHRHDHADAAAHHGAHGQQAFHARDHNFRAAYLHVIGDAVVSVLAIAGLIAARAFGWNW MDPLAGIVGALVIANWSFVLIRDTGATLLDMTPDPALAARIRERIEGDGDAVVDLHLWRLGPGHLSAALSVATGSASRDA RFYHQRLAGVDGLSHLTVEVMPAAAPRS >Mature_348_residues MNETLGMKSGPVRHEHVFLGAEHASRERRTWFVIALCALTMLAEIAGGWRFGSLALVADGLHMSTHAGAMLIAALAYTYA RRHAHDSRFSFGTGKLGDLAGFTSAVALALIAVLIGYEAVTRLVEPVPIRFGEAIPIAVFGLAVNLSCAWLLGGAHHGHA HGGHDHHDGHDHAPERHQADAAHRHDHADAAAHHGAHGQQAFHARDHNFRAAYLHVIGDAVVSVLAIAGLIAARAFGWNW MDPLAGIVGALVIANWSFVLIRDTGATLLDMTPDPALAARIRERIEGDGDAVVDLHLWRLGPGHLSAALSVATGSASRDA RFYHQRLAGVDGLSHLTVEVMPAAAPRS
Specific function: Involved in divalent cation and potassium homeostasis in the cell. Catalyzes the active efflux of zinc, cadmium and cobalt, in exchange for potassium and H(+) ions [H]
COG id: COG1230
COG function: function code P; Co/Zn/Cd efflux system component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. SLC30A subfamily [H]
Homologues:
Organism=Homo sapiens, GI20070323, Length=324, Percent_Identity=27.1604938271605, Blast_Score=95, Evalue=8e-20, Organism=Homo sapiens, GI21359890, Length=291, Percent_Identity=29.2096219931272, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI52352805, Length=298, Percent_Identity=23.1543624161074, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI222080086, Length=307, Percent_Identity=24.7557003257329, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI40255009, Length=307, Percent_Identity=24.7557003257329, Blast_Score=75, Evalue=1e-13, Organism=Escherichia coli, GI1786966, Length=277, Percent_Identity=31.0469314079422, Blast_Score=88, Evalue=1e-18, Organism=Caenorhabditis elegans, GI32564488, Length=322, Percent_Identity=26.3975155279503, Blast_Score=79, Evalue=4e-15, Organism=Caenorhabditis elegans, GI193210990, Length=337, Percent_Identity=25.5192878338279, Blast_Score=72, Evalue=6e-13, Organism=Saccharomyces cerevisiae, GI6323899, Length=344, Percent_Identity=25.8720930232558, Blast_Score=78, Evalue=3e-15, Organism=Saccharomyces cerevisiae, GI6320411, Length=237, Percent_Identity=23.6286919831224, Blast_Score=64, Evalue=4e-11, Organism=Drosophila melanogaster, GI24645863, Length=298, Percent_Identity=27.5167785234899, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI24656728, Length=338, Percent_Identity=25.7396449704142, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24656724, Length=338, Percent_Identity=25.7396449704142, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24656720, Length=338, Percent_Identity=25.7396449704142, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24656715, Length=338, Percent_Identity=25.7396449704142, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI21357035, Length=338, Percent_Identity=25.7396449704142, Blast_Score=69, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002524 [H]
Pfam domain/function: PF01545 Cation_efflux [H]
EC number: NA
Molecular weight: Translated: 37045; Mature: 37045
Theoretical pI: Translated: 7.09; Mature: 7.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNETLGMKSGPVRHEHVFLGAEHASRERRTWFVIALCALTMLAEIAGGWRFGSLALVADG CCCCCCCCCCCCCEEEEEEECHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC LHMSTHAGAMLIAALAYTYARRHAHDSRFSFGTGKLGDLAGFTSAVALALIAVLIGYEAV CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH TRLVEPVPIRFGEAIPIAVFGLAVNLSCAWLLGGAHHGHAHGGHDHHDGHDHAPERHQAD HHHHCCCCCCCCCCCHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHH AAHRHDHADAAAHHGAHGQQAFHARDHNFRAAYLHVIGDAVVSVLAIAGLIAARAFGWNW HHHHCCCHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH MDPLAGIVGALVIANWSFVLIRDTGATLLDMTPDPALAARIRERIEGDGDAVVDLHLWRL HHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEEEC GPGHLSAALSVATGSASRDARFYHQRLAGVDGLSHLTVEVMPAAAPRS CCHHHHHHHHEECCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC >Mature Secondary Structure MNETLGMKSGPVRHEHVFLGAEHASRERRTWFVIALCALTMLAEIAGGWRFGSLALVADG CCCCCCCCCCCCCEEEEEEECHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC LHMSTHAGAMLIAALAYTYARRHAHDSRFSFGTGKLGDLAGFTSAVALALIAVLIGYEAV CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH TRLVEPVPIRFGEAIPIAVFGLAVNLSCAWLLGGAHHGHAHGGHDHHDGHDHAPERHQAD HHHHCCCCCCCCCCCHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHH AAHRHDHADAAAHHGAHGQQAFHARDHNFRAAYLHVIGDAVVSVLAIAGLIAARAFGWNW HHHHCCCHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH MDPLAGIVGALVIANWSFVLIRDTGATLLDMTPDPALAARIRERIEGDGDAVVDLHLWRL HHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEEEC GPGHLSAALSVATGSASRDARFYHQRLAGVDGLSHLTVEVMPAAAPRS CCHHHHHHHHEECCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9308178; 9384377; 9099864 [H]