Click here to switch to the map view.

The map label for this gene is fecI [C]

Identifier: 238023797

GI number: 238023797

Start: 393237

End: 393809

Strand: Reverse

Name: fecI [C]

Synonym: bglu_2g03330

Alternate gene names: 238023797

Gene position: 393809-393237 (Counterclockwise)

Preceding gene: 238023798

Following gene: 238023796

Centisome position: 13.93

GC content: 72.43

Gene sequence:

>573_bases
ATGGAACCGCCGCCCACCCCGCCCCCGCCGACCGTGCAGGACCGCGCAATCGCCGACGCCGTGGCCCGCGAGCGGCCAGC
GCTGCGCAACTTCATCCGCCGGCGCGTGCTCGACCAGGACGAGGCCGAGGACATTCTCCAGGACGTGTTCGAGAGGATGG
TAGAGGCGTACCGGCTGCCGGAGCCGATCGAGCAGATCGGCGCCTGGCTGTACCGCGTCGCGCGCAACCGGATCGTCGAC
CGCTTCCGCAAGAAGCAGGAAGCGCCGCTGCCCGAGGCCGCCGGCGACGACGACGAGGCCTGCCGGCTCGACCTCGCGCT
GCCCGCGTCGACCGACGGCCCGGAGGCGGCCTACGAACGCGCCGCGCTGCTCGACGCGCTGCGGGCCGCGCTCGACGAGC
TGCCGGCCAGCCAGCGCGAGGTGTTCGTCGCCCACGAGCTCGACGGGCGCAGTTTCAAGGAGCTGGCCGCGGCCACCGGC
ACGAGCGTCAGCACGCTGCTGGCCCGCAAGCGGTACGCGGTGCTGCATCTGCGCAAACGGCTGCAGCCCGTCTACGACGA
ATTCGCGAATTGA

Upstream 100 bases:

>100_bases
GCCGCTGGGCGGCTCGCCTGCGTTTCCCCTGAGCCGACGATTTTCGGCAAGCTGGCCGCGCACGCCACAATATTTCCCTT
CCTGATCCGTCAACACGGGT

Downstream 100 bases:

>100_bases
AGCGAAGGAGGACTGAATGACAAGGTATCGAGGCAGGTGGATCGCCAAGCTGCTGCTGTTCGTGGTGGCCGTGGCCGTGC
TGGGGCGCATCGTGATGGCG

Product: ECF subfamily RNA polymerase sigma-24 subunit

Products: NA

Alternate protein names: Sigma-; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma-24 Subunit ECF Subfamily Protein; RNA Polymerase Sigma-70 Factor ECF Subfamily Protein; RNA Polymerase Sigma-70 Factor Ecf Subfamily; RNA Polymerase Sigma-30 Factor; RNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase Sigma Subunit Ecf Family; Sigma-70 Family RNA Polymerase Sigma Factor; RNA Polymerase

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MEPPPTPPPPTVQDRAIADAVARERPALRNFIRRRVLDQDEAEDILQDVFERMVEAYRLPEPIEQIGAWLYRVARNRIVD
RFRKKQEAPLPEAAGDDDEACRLDLALPASTDGPEAAYERAALLDALRAALDELPASQREVFVAHELDGRSFKELAAATG
TSVSTLLARKRYAVLHLRKRLQPVYDEFAN

Sequences:

>Translated_190_residues
MEPPPTPPPPTVQDRAIADAVARERPALRNFIRRRVLDQDEAEDILQDVFERMVEAYRLPEPIEQIGAWLYRVARNRIVD
RFRKKQEAPLPEAAGDDDEACRLDLALPASTDGPEAAYERAALLDALRAALDELPASQREVFVAHELDGRSFKELAAATG
TSVSTLLARKRYAVLHLRKRLQPVYDEFAN
>Mature_190_residues
MEPPPTPPPPTVQDRAIADAVARERPALRNFIRRRVLDQDEAEDILQDVFERMVEAYRLPEPIEQIGAWLYRVARNRIVD
RFRKKQEAPLPEAAGDDDEACRLDLALPASTDGPEAAYERAALLDALRAALDELPASQREVFVAHELDGRSFKELAAATG
TSVSTLLARKRYAVLHLRKRLQPVYDEFAN

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21439; Mature: 21439

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPPPTPPPPTVQDRAIADAVARERPALRNFIRRRVLDQDEAEDILQDVFERMVEAYRLP
CCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
EPIEQIGAWLYRVARNRIVDRFRKKQEAPLPEAAGDDDEACRLDLALPASTDGPEAAYER
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHH
AALLDALRAALDELPASQREVFVAHELDGRSFKELAAATGTSVSTLLARKRYAVLHLRKR
HHHHHHHHHHHHHCCCCHHHEEHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
LQPVYDEFAN
HHHHHHHHCC
>Mature Secondary Structure
MEPPPTPPPPTVQDRAIADAVARERPALRNFIRRRVLDQDEAEDILQDVFERMVEAYRLP
CCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
EPIEQIGAWLYRVARNRIVDRFRKKQEAPLPEAAGDDDEACRLDLALPASTDGPEAAYER
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHH
AALLDALRAALDELPASQREVFVAHELDGRSFKELAAATGTSVSTLLARKRYAVLHLRKR
HHHHHHHHHHHHHCCCCHHHEEHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
LQPVYDEFAN
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA