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The map label for this gene is ycdC [C]

Identifier: 238023754

GI number: 238023754

Start: 332565

End: 333272

Strand: Reverse

Name: ycdC [C]

Synonym: bglu_2g02860

Alternate gene names: 238023754

Gene position: 333272-332565 (Counterclockwise)

Preceding gene: 238023758

Following gene: 238023753

Centisome position: 11.79

GC content: 74.58

Gene sequence:

>708_bases
ATGAACGACACCCGGCCTCCCGCGCCCGGCACGCTGCCCGACCAGGCCGGTGCCGCGGCCGCCTCCCCGATGCCCGCGCC
GGATCACGCCCGCGACGGCGGCCGCGCTGCCGCGGCGCCCGATGCCGGCGCCCCCGCCGACGAGACGCGCGGCAGCCGCC
GCAAGAAGGCCCCGGCCCACGTGCGCTCGGCGTTGCTGCGGGCCGCCGCCGACATCGCCACCGAGCACGGCGTGCAGGCC
GTCACGCTGGAGGCCGTGGCCGAGCGCGCCGGAGTCAGCAAGGGCGGCCTCCAATACCATTTCCGCAGCAAGCAGGCGCT
GTTCGACGCGCTGTTCGCGCAGACCCTCGAACGCTTCGAGGCGCAGATGAAGGCCTCGATCGCCGCCGACCCGCATCCGG
CCGGCGCGAACGCGCGCGCCTACCTGCACGCGGCGATGAACGAGGCCGCGCCGGCCGCGAGCACGAACCTGCTGCGCGTG
CTGGTCGCCTCGATGATGACCGACCCCGACGCGCGCGAGCGCTGGGCCAAGCCCATGCGCGAGCTCTCGCGCCCCGATCC
GCTGCCGCTCGAACAGGCGGCCAGGCTGATGATCTGCCGGCTCGCCGCCGACGGGATGTGGATTTCCGAGCTGCTCGGCT
ACCAGAGCCTCTCGCCGGCGCTGCGCGACGAAATCGTGCGGCAGCTCGAGGTGATGACCGCGAGGTGA

Upstream 100 bases:

>100_bases
AGCAGGGATGGAAGCGGAAGATCGGAATTTTTCATCGGCCGGATCATACCATCCGGCCGGATTGTTGGGCGTGCCGAAAC
CGCGATGGTAAGATGCGCGC

Downstream 100 bases:

>100_bases
GGCGCGCGGCGGATCGCGGCGGGGCCTGCGGCCGCCTGCGCTACCATCGTGGAAAATATGCGGGCCCCCACCCGGGCGCC
CGTATCGTGACCGACCTTCG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Regulatory Protein TetR; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator Protein TetR Family; Transcriptional Regulator Protein; TetR Family Regulatory Protein; Transcriptional Regulator TetR; Tetr Family Transcriptional Regulator; Transcriptional Regulatory Protein TetR Family

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MNDTRPPAPGTLPDQAGAAAASPMPAPDHARDGGRAAAAPDAGAPADETRGSRRKKAPAHVRSALLRAAADIATEHGVQA
VTLEAVAERAGVSKGGLQYHFRSKQALFDALFAQTLERFEAQMKASIAADPHPAGANARAYLHAAMNEAAPAASTNLLRV
LVASMMTDPDARERWAKPMRELSRPDPLPLEQAARLMICRLAADGMWISELLGYQSLSPALRDEIVRQLEVMTAR

Sequences:

>Translated_235_residues
MNDTRPPAPGTLPDQAGAAAASPMPAPDHARDGGRAAAAPDAGAPADETRGSRRKKAPAHVRSALLRAAADIATEHGVQA
VTLEAVAERAGVSKGGLQYHFRSKQALFDALFAQTLERFEAQMKASIAADPHPAGANARAYLHAAMNEAAPAASTNLLRV
LVASMMTDPDARERWAKPMRELSRPDPLPLEQAARLMICRLAADGMWISELLGYQSLSPALRDEIVRQLEVMTAR
>Mature_235_residues
MNDTRPPAPGTLPDQAGAAAASPMPAPDHARDGGRAAAAPDAGAPADETRGSRRKKAPAHVRSALLRAAADIATEHGVQA
VTLEAVAERAGVSKGGLQYHFRSKQALFDALFAQTLERFEAQMKASIAADPHPAGANARAYLHAAMNEAAPAASTNLLRV
LVASMMTDPDARERWAKPMRELSRPDPLPLEQAARLMICRLAADGMWISELLGYQSLSPALRDEIVRQLEVMTAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24997; Mature: 24997

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDTRPPAPGTLPDQAGAAAASPMPAPDHARDGGRAAAAPDAGAPADETRGSRRKKAPAH
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHCCHHH
VRSALLRAAADIATEHGVQAVTLEAVAERAGVSKGGLQYHFRSKQALFDALFAQTLERFE
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
AQMKASIAADPHPAGANARAYLHAAMNEAAPAASTNLLRVLVASMMTDPDARERWAKPMR
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
ELSRPDPLPLEQAARLMICRLAADGMWISELLGYQSLSPALRDEIVRQLEVMTAR
HHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCHHHCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNDTRPPAPGTLPDQAGAAAASPMPAPDHARDGGRAAAAPDAGAPADETRGSRRKKAPAH
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHCCHHH
VRSALLRAAADIATEHGVQAVTLEAVAERAGVSKGGLQYHFRSKQALFDALFAQTLERFE
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
AQMKASIAADPHPAGANARAYLHAAMNEAAPAASTNLLRVLVASMMTDPDARERWAKPMR
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
ELSRPDPLPLEQAARLMICRLAADGMWISELLGYQSLSPALRDEIVRQLEVMTAR
HHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCHHHCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA