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The map label for this gene is yscS [H]

Identifier: 238023705

GI number: 238023705

Start: 274533

End: 274796

Strand: Reverse

Name: yscS [H]

Synonym: bglu_2g02330

Alternate gene names: 238023705

Gene position: 274796-274533 (Counterclockwise)

Preceding gene: 238023706

Following gene: 238023704

Centisome position: 9.72

GC content: 66.67

Gene sequence:

>264_bases
ATGGACGTCGATTCGCTGATCCGCTTCACCACCGAGGGCATGCTGCTGTGCCTGACCGTGTCGCTGCCGCCGGTGATCGT
CGCCGCCGTGGTCGGCCTCGGCGTGTCGTTCGTGCAGGCCATCACGTCGCTGCAGGACCAGACGCTGCCCCAGGTGATCA
AGCTGGTGGCCGTGACCATCACGATCGTGATCGCCGCGCCGGTGTGCTGCGCGGCCGTGCTGCACTTCGCGAATCAGTTG
ATGCGCACCGCGGTGCCGCTGTAA

Upstream 100 bases:

>100_bases
CGCGATCCCGTTCAAGCTGCTGCTGTTCGTGGTGATGGACGGCTGGTCGACGCTGATCCACGGCCTCGTGATGACCTACA
AGTAACCAGGAGGCTCGACG

Downstream 100 bases:

>100_bases
CGGCAAGGAGGCTTCGATGGCAATCAATCGCGCCCCAGGCAGCAACGCGCAGGCCAACGCCACGAGTCAGGCGCGCCTGG
CCGACGCGCAGCAGAACGCC

Product: type III secretion inner membrane protein SctS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 87; Mature: 87

Protein sequence:

>87_residues
MDVDSLIRFTTEGMLLCLTVSLPPVIVAAVVGLGVSFVQAITSLQDQTLPQVIKLVAVTITIVIAAPVCCAAVLHFANQL
MRTAVPL

Sequences:

>Translated_87_residues
MDVDSLIRFTTEGMLLCLTVSLPPVIVAAVVGLGVSFVQAITSLQDQTLPQVIKLVAVTITIVIAAPVCCAAVLHFANQL
MRTAVPL
>Mature_87_residues
MDVDSLIRFTTEGMLLCLTVSLPPVIVAAVVGLGVSFVQAITSLQDQTLPQVIKLVAVTITIVIAAPVCCAAVLHFANQL
MRTAVPL

Specific function: Component of the Yop secretion machinery [H]

COG id: COG4794

COG function: function code U; Type III secretory pathway, component EscS

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliQ/MopD/SpaQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002191
- InterPro:   IPR006306 [H]

Pfam domain/function: PF01313 Bac_export_3 [H]

EC number: NA

Molecular weight: Translated: 9131; Mature: 9131

Theoretical pI: Translated: 5.56; Mature: 5.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVDSLIRFTTEGMLLCLTVSLPPVIVAAVVGLGVSFVQAITSLQDQTLPQVIKLVAVTI
CCHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TIVIAAPVCCAAVLHFANQLMRTAVPL
HHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDVDSLIRFTTEGMLLCLTVSLPPVIVAAVVGLGVSFVQAITSLQDQTLPQVIKLVAVTI
CCHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TIVIAAPVCCAAVLHFANQLMRTAVPL
HHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8300512; 9746557; 9748454; 11586360 [H]