| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is olpB [H]
Identifier: 238023641
GI number: 238023641
Start: 169629
End: 172157
Strand: Direct
Name: olpB [H]
Synonym: bglu_2g01500
Alternate gene names: 238023641
Gene position: 169629-172157 (Clockwise)
Preceding gene: 238023640
Following gene: 238023642
Centisome position: 6.0
GC content: 64.33
Gene sequence:
>2529_bases GTGACGAGCGCGGCGATACCGCAGGTGCTGGGGCATGCCGCGCTGGAATTTATGGCGATGGAGGGTAGCGAGGAACTCGG CAAGCTGTTCGATTACAAAGTGCTGCTGCGTACTCCGGACGATTACGTGATACCGCTGGCCGAGAGCGCGAATCTCGACT TGCGCGCGATGCTCGGCAAGGAGTTGACCGTGTCGATCGAACTCGATGCGCCGGCTGGTGTGCAGGGCACGGCACAGGGC GCCGTGCGCGAGATCACCGGGTTGATCATCAAGTCGGAGTTCGTGCGCCGCGAGGGACGTTTCAACGTCTATCGCGTGAC CCTGAAGCCGTGGCTGTGGCTCGCCACGCTGACCACCGACTACCGCATCTTCCAGGACAAGACGGTGATCGAGATCCTCG ACACGATCCTCGGCGAGTATCCGTATCCGGTCGAGAAGCGGCTCGACGTGAGCCGTTATGTGCTGATGGGCGAGAGCGAG CGGAATGAGCCGCGAGCCTACCAGGTCCAGTACGGCGAGTCCGACTTCCGCTTCATGCAGCGCCTGATGGAGGAGTGGGG CATCTACTGGTTCATCGAGCACTCCGACGGCAAGCAGCGGCTGGTGTTGTGCGACCACGTCGGCGCGCACCGCAAGTCGC CGAACCCGGCGTATCAAAAGCTGGCGTTCCAGCCGCAGGAGGGCAAGACCGACGCGGAATATATCAGCGCGTTCTCGACG GCCGAGATGATCTGCCCGGGCAGCTATTTGACGAACGACTTCGATTTCACGCGGCCGCGGGCGGATTTGCATGCGGTCAA CCAGCAGGCGCGCGATACCGACTGGAATACGTTCGAGCGCTATGAATGGCCCGGCGACTACAGCGATAGCCATCACGGCG AGTTGCTGGCGCGCACGCGCATGGAAATGCTGCGTGCGCCAGGCATGCGCGCGAGCGGCAAGGGCAACCTGCGCGGGCTC GCGTGCGGGCAGACCTTCGAGTTGATCAATTTCGATCGCACGGATGCCAACCGCGAATATCTGGTGATAGGCGCCGAGCT CAAGGTGATCGGCAACCCGGACGAATCGGGCAGCGGCTATCAGTACAGGTTTTCCAATCGCTTTAAGGTACAGCCGACCA GCGAGGTGTTCCGGCTGCCGATGGTCACGCGCAAGCCATTCGTGAGGGGGCCGCAGTCGGCCATCGTGGTGGGTCCGGAA GGCGAAACGCTGTGGACCGACGAGTTTGGTCGCGTGAAGGTGCATTTTGCATGGGACCGCTATGGCCGCAACGCCGAGAC CGATTCGTGCTGGGTACGGGTGAGCCAGGCCTGGGCGGGCTCCAATTTCGGCAGCATTTATATTCCGCGCATCGGTCAGG AAGTGATCGTCGATTTCTGGAATGGCGACCCCGATCGCCCCCTGATCCTCGGCAGTCTCTACAACACGCTGACGCCGCCG CCATGGGATCTGCCGGGCAACGCGACGCAGAGCGGCGTGATGAGCCGTTCGATCAATGGCGGCAAGCAGAATTTCAACGC CATTCGATTCGAGGACAAGGCGGGAGCCGAAGAGGTCCTGATCCAGGCTGAGCGCGAAATGAACTGGCTGACCAAGCTGA ACGAGTCGCACGTTGTGGGTGTCGATTTCTCGGTCGCCGTCGGTGCCGCGTTCAACGTCGAGGTGGGCGGGGAAGTCAAT TGCAACGTGCTGGGCATGGCGTCCTACGCCGTGGGTCTTGCGCACAGCTTGTTGGTGGGTGGGGCGCAGACCACGGCGGT GGCCGGTGCCTCGACGCTGACCGTGGGCGAGGCGCGATCCGTCACGGTGGGAGGCGCGTCCTTGCATACCGTCGGTGGCA TGTACGCGTTGACCGCGGGTGGCGAGATATCGATTTCGTCCGGCAAGTCGTCGCTGACGCTGTGCGCGGACGGCACGATC AAGCTGATCGGCAGGACAGTCCAAATTCAGGGCGACGATCGCGTCGTCTTGCAGGGTTCGCCGCTCGATCTCAACCCGGG TGATCCTGATGTTGGGATCGGTCTGGCAGCACCGACTCCGCTCGTTCTTGCGGCCTTGCCGTTGCCATTGCTGTTGCCGC TGCCGCTGCCGTTACCGTTGCCGGGGCCGGCCCCTGAACCGACGCCGGCCCCTGAACCGACGCCGGCCCCTGAACCGACG CCGGCCCCTGAACCGACGCCGACACCTGAGCCGACGCCGGCACCTGAGCCGACGCCGGCCCCTGAACCGACGCCGGCACC TGAACCGACACCGACACCGACACCGACACCGACACCGACACCGACACCGACACCGACACCGACACCGACACCGACACCGA CACCGACACCGACACCGACACCGACACCGACACCGACACCGACACCGACACCGACACCGACACCGACACCGACACCGACA CCGACACCGACACCGACACCGACACCGACGCCGACGCCGACGCCGACGCCGACGCCGACGCCGACACCGACACCGCCGCC GACGCCGTTACCGACGGAAACGCCGCAGCCCAGCGGTCACGACACCTGA
Upstream 100 bases:
>100_bases GGGTCGAAGCCGCGCATCGGGACGGCGTTCGATCAACAGTATTGGGGAGCGTATGGCAACTGATTCGAAGACGATCAACC CTCGACGCCGTTCAGTCAGC
Downstream 100 bases:
>100_bases TCGCGGCGACAAGGCATGTCGTAACCCGCCGTGCGTAAGCCGCACGGCATTTCCAGCTTTCGAAAAGGAGAAGGGAAAAT GTATTCAGCAGCGCGGGTAG
Product: type VI secretion system Vgr family protein
Products: NA
Alternate protein names: Outer layer protein B; S-layer protein 1 [H]
Number of amino acids: Translated: 842; Mature: 841
Protein sequence:
>842_residues MTSAAIPQVLGHAALEFMAMEGSEELGKLFDYKVLLRTPDDYVIPLAESANLDLRAMLGKELTVSIELDAPAGVQGTAQG AVREITGLIIKSEFVRREGRFNVYRVTLKPWLWLATLTTDYRIFQDKTVIEILDTILGEYPYPVEKRLDVSRYVLMGESE RNEPRAYQVQYGESDFRFMQRLMEEWGIYWFIEHSDGKQRLVLCDHVGAHRKSPNPAYQKLAFQPQEGKTDAEYISAFST AEMICPGSYLTNDFDFTRPRADLHAVNQQARDTDWNTFERYEWPGDYSDSHHGELLARTRMEMLRAPGMRASGKGNLRGL ACGQTFELINFDRTDANREYLVIGAELKVIGNPDESGSGYQYRFSNRFKVQPTSEVFRLPMVTRKPFVRGPQSAIVVGPE GETLWTDEFGRVKVHFAWDRYGRNAETDSCWVRVSQAWAGSNFGSIYIPRIGQEVIVDFWNGDPDRPLILGSLYNTLTPP PWDLPGNATQSGVMSRSINGGKQNFNAIRFEDKAGAEEVLIQAEREMNWLTKLNESHVVGVDFSVAVGAAFNVEVGGEVN CNVLGMASYAVGLAHSLLVGGAQTTAVAGASTLTVGEARSVTVGGASLHTVGGMYALTAGGEISISSGKSSLTLCADGTI KLIGRTVQIQGDDRVVLQGSPLDLNPGDPDVGIGLAAPTPLVLAALPLPLLLPLPLPLPLPGPAPEPTPAPEPTPAPEPT PAPEPTPTPEPTPAPEPTPAPEPTPAPEPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPT PTPTPTPTPTPTPTPTPTPTPTPTPPPTPLPTETPQPSGHDT
Sequences:
>Translated_842_residues MTSAAIPQVLGHAALEFMAMEGSEELGKLFDYKVLLRTPDDYVIPLAESANLDLRAMLGKELTVSIELDAPAGVQGTAQG AVREITGLIIKSEFVRREGRFNVYRVTLKPWLWLATLTTDYRIFQDKTVIEILDTILGEYPYPVEKRLDVSRYVLMGESE RNEPRAYQVQYGESDFRFMQRLMEEWGIYWFIEHSDGKQRLVLCDHVGAHRKSPNPAYQKLAFQPQEGKTDAEYISAFST AEMICPGSYLTNDFDFTRPRADLHAVNQQARDTDWNTFERYEWPGDYSDSHHGELLARTRMEMLRAPGMRASGKGNLRGL ACGQTFELINFDRTDANREYLVIGAELKVIGNPDESGSGYQYRFSNRFKVQPTSEVFRLPMVTRKPFVRGPQSAIVVGPE GETLWTDEFGRVKVHFAWDRYGRNAETDSCWVRVSQAWAGSNFGSIYIPRIGQEVIVDFWNGDPDRPLILGSLYNTLTPP PWDLPGNATQSGVMSRSINGGKQNFNAIRFEDKAGAEEVLIQAEREMNWLTKLNESHVVGVDFSVAVGAAFNVEVGGEVN CNVLGMASYAVGLAHSLLVGGAQTTAVAGASTLTVGEARSVTVGGASLHTVGGMYALTAGGEISISSGKSSLTLCADGTI KLIGRTVQIQGDDRVVLQGSPLDLNPGDPDVGIGLAAPTPLVLAALPLPLLLPLPLPLPLPGPAPEPTPAPEPTPAPEPT PAPEPTPTPEPTPAPEPTPAPEPTPAPEPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPT PTPTPTPTPTPTPTPTPTPTPTPTPPPTPLPTETPQPSGHDT >Mature_841_residues TSAAIPQVLGHAALEFMAMEGSEELGKLFDYKVLLRTPDDYVIPLAESANLDLRAMLGKELTVSIELDAPAGVQGTAQGA VREITGLIIKSEFVRREGRFNVYRVTLKPWLWLATLTTDYRIFQDKTVIEILDTILGEYPYPVEKRLDVSRYVLMGESER NEPRAYQVQYGESDFRFMQRLMEEWGIYWFIEHSDGKQRLVLCDHVGAHRKSPNPAYQKLAFQPQEGKTDAEYISAFSTA EMICPGSYLTNDFDFTRPRADLHAVNQQARDTDWNTFERYEWPGDYSDSHHGELLARTRMEMLRAPGMRASGKGNLRGLA CGQTFELINFDRTDANREYLVIGAELKVIGNPDESGSGYQYRFSNRFKVQPTSEVFRLPMVTRKPFVRGPQSAIVVGPEG ETLWTDEFGRVKVHFAWDRYGRNAETDSCWVRVSQAWAGSNFGSIYIPRIGQEVIVDFWNGDPDRPLILGSLYNTLTPPP WDLPGNATQSGVMSRSINGGKQNFNAIRFEDKAGAEEVLIQAEREMNWLTKLNESHVVGVDFSVAVGAAFNVEVGGEVNC NVLGMASYAVGLAHSLLVGGAQTTAVAGASTLTVGEARSVTVGGASLHTVGGMYALTAGGEISISSGKSSLTLCADGTIK LIGRTVQIQGDDRVVLQGSPLDLNPGDPDVGIGLAAPTPLVLAALPLPLLLPLPLPLPLPGPAPEPTPAPEPTPAPEPTP APEPTPTPEPTPAPEPTPAPEPTPAPEPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTP TPTPTPTPTPTPTPTPTPTPTPTPPPTPLPTETPQPSGHDT
Specific function: Unknown
COG id: COG3501
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Secreted, cell wall, S-layer [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 3 SLH (S-layer homology) domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008965 - InterPro: IPR002102 - InterPro: IPR018452 - InterPro: IPR001119 [H]
Pfam domain/function: PF00963 Cohesin; PF00395 SLH [H]
EC number: NA
Molecular weight: Translated: 91137; Mature: 91005
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSAAIPQVLGHAALEFMAMEGSEELGKLFDYKVLLRTPDDYVIPLAESANLDLRAMLGK CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCEEEEEECCCCEEEEECCCCCCEEEEECCC ELTVSIELDAPAGVQGTAQGAVREITGLIIKSEFVRREGRFNVYRVTLKPWLWLATLTTD EEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEEECC YRIFQDKTVIEILDTILGEYPYPVEKRLDVSRYVLMGESERNEPRAYQVQYGESDFRFMQ EEEECCCHHHHHHHHHHCCCCCCHHHHCCCEEEEEECCCCCCCCCEEEEEECCHHHHHHH RLMEEWGIYWFIEHSDGKQRLVLCDHVGAHRKSPNPAYQKLAFQPQEGKTDAEYISAFST HHHHHCCEEEEEECCCCCEEEEEECCCCCCCCCCCHHHHHEECCCCCCCCHHHHHHHHHH AEMICPGSYLTNDFDFTRPRADLHAVNQQARDTDWNTFERYEWPGDYSDSHHGELLARTR HHEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCHHHHHHHH MEMLRAPGMRASGKGNLRGLACGQTFELINFDRTDANREYLVIGAELKVIGNPDESGSGY HHHHHCCCCCCCCCCCCEEEECCCEEEEEECCCCCCCCEEEEEEEEEEEECCCCCCCCCE QYRFSNRFKVQPTSEVFRLPMVTRKPFVRGPQSAIVVGPEGETLWTDEFGRVKVHFAWDR EEEECCEEEECCHHHHHCCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCEEEEEEEEHH YGRNAETDSCWVRVSQAWAGSNFGSIYIPRIGQEVIVDFWNGDPDRPLILGSLYNTLTPP CCCCCCCCCEEEEEEEHHCCCCCCEEEECCCCCEEEEEECCCCCCCCEEEECHHHHCCCC PWDLPGNATQSGVMSRSINGGKQNFNAIRFEDKAGAEEVLIQAEREMNWLTKLNESHVVG CCCCCCCCCHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEE VDFSVAVGAAFNVEVGGEVNCNVLGMASYAVGLAHSLLVGGAQTTAVAGASTLTVGEARS EEEHEEECEEEEEEECCCCCCEEEEHHHHHHHHHHHHHHCCCHHHEECCCCEEEECCCCE VTVGGASLHTVGGMYALTAGGEISISSGKSSLTLCADGTIKLIGRTVQIQGDDRVVLQGS EEECCCCCHHCCCEEEEECCCEEEECCCCCEEEEEECCEEEEEEEEEEECCCCEEEEECC PLDLNPGDPDVGIGLAAPTPLVLAALPLPLLLPLPLPLPLPGPAPEPTPAPEPTPAPEPT CCCCCCCCCCCEEECCCCCHHHHHHCCCHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCC PAPEPTPTPEPTPAPEPTPAPEPTPAPEPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPPPTPLPTETPQPSGH CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC DT CC >Mature Secondary Structure TSAAIPQVLGHAALEFMAMEGSEELGKLFDYKVLLRTPDDYVIPLAESANLDLRAMLGK CCHHHHHHHHHHHHHHHCCCCCHHHHHHHCEEEEEECCCCEEEEECCCCCCEEEEECCC ELTVSIELDAPAGVQGTAQGAVREITGLIIKSEFVRREGRFNVYRVTLKPWLWLATLTTD EEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEEECC YRIFQDKTVIEILDTILGEYPYPVEKRLDVSRYVLMGESERNEPRAYQVQYGESDFRFMQ EEEECCCHHHHHHHHHHCCCCCCHHHHCCCEEEEEECCCCCCCCCEEEEEECCHHHHHHH RLMEEWGIYWFIEHSDGKQRLVLCDHVGAHRKSPNPAYQKLAFQPQEGKTDAEYISAFST HHHHHCCEEEEEECCCCCEEEEEECCCCCCCCCCCHHHHHEECCCCCCCCHHHHHHHHHH AEMICPGSYLTNDFDFTRPRADLHAVNQQARDTDWNTFERYEWPGDYSDSHHGELLARTR HHEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCHHHHHHHH MEMLRAPGMRASGKGNLRGLACGQTFELINFDRTDANREYLVIGAELKVIGNPDESGSGY HHHHHCCCCCCCCCCCCEEEECCCEEEEEECCCCCCCCEEEEEEEEEEEECCCCCCCCCE QYRFSNRFKVQPTSEVFRLPMVTRKPFVRGPQSAIVVGPEGETLWTDEFGRVKVHFAWDR EEEECCEEEECCHHHHHCCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCEEEEEEEEHH YGRNAETDSCWVRVSQAWAGSNFGSIYIPRIGQEVIVDFWNGDPDRPLILGSLYNTLTPP CCCCCCCCCEEEEEEEHHCCCCCCEEEECCCCCEEEEEECCCCCCCCEEEECHHHHCCCC PWDLPGNATQSGVMSRSINGGKQNFNAIRFEDKAGAEEVLIQAEREMNWLTKLNESHVVG CCCCCCCCCHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEE VDFSVAVGAAFNVEVGGEVNCNVLGMASYAVGLAHSLLVGGAQTTAVAGASTLTVGEARS EEEHEEECEEEEEEECCCCCCEEEEHHHHHHHHHHHHHHCCCHHHEECCCCEEEECCCCE VTVGGASLHTVGGMYALTAGGEISISSGKSSLTLCADGTIKLIGRTVQIQGDDRVVLQGS EEECCCCCHHCCCEEEEECCCEEEECCCCCEEEEEECCEEEEEEEEEEECCCCEEEEECC PLDLNPGDPDVGIGLAAPTPLVLAALPLPLLLPLPLPLPLPGPAPEPTPAPEPTPAPEPT CCCCCCCCCCCEEECCCCCHHHHHHCCCHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCC PAPEPTPTPEPTPAPEPTPAPEPTPAPEPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPPPTPLPTETPQPSGH CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC DT CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8458832 [H]