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The map label for this gene is ecpD [H]

Identifier: 238023628

GI number: 238023628

Start: 150173

End: 150952

Strand: Direct

Name: ecpD [H]

Synonym: bglu_2g01370

Alternate gene names: 238023628

Gene position: 150173-150952 (Clockwise)

Preceding gene: 238023627

Following gene: 238023629

Centisome position: 5.31

GC content: 61.67

Gene sequence:

>780_bases
ATGAATTCGACGCTCTATCGTCTTCTTACTGCGGTGGCCATGGGTGTGGTTTGCGCGCTCGCCGCGCAGGCTGCTCAGGC
TGCTATCACGATCGTCGGCACGCGTGTGGTGTATCCCGCTCAGGAGCGCCAAGTCAGTGTACGGCTGGACAACGTCGACG
ATCATCCCGTATTGGTGCAGGCGTGGCTGGACACCGGAGACGCGTCCGCCGCGCCCAACGAGATCAAGGTGCCGTTCGTG
TTGCTGCCATCGATATTCCGAGTCGAACCACATCGCGGGCAGGCGATGCGCATCATGTTCACGGGTGGCGAGATGCCGAC
GGACCGCGAGGTCGTCTACTGGCTGAATGTGCTTGAGATTCCTCCGGTGCCGCCCGATGCGGATCAGCGCAGCATGATCC
AGCTCGCGTTCCGTACCCGCATCAAGATGTTTTATCGGCCGGCTTCGTTGACCGAAACACCGACGGTACAGATCAAGCAG
CTCAAGTGGAGCGAGGTGGCGAACGACAAGGGCCAGTGGCGGATTCGTCTCGACAATCCTTCTCCCTATTACATTTCGAT
CGGGCGGGCCGTGTTGACCGCCGGCGCGCGCACCTTGGTGCTGCAGCCGGAGATGGCGCCGCCGTTCGGGCATGTCGATC
TGGTGCCGGTGGCAGGCAAGATCGAACCCGATGTGCCGGGGACGCTCACCTATTCGGTCTTGAGTGACTATGGCGCGGCC
GAGGAGGCGTCAACGCAGTTCGACGGCGCGCCGCAGGCAAAAGCCAATAATAGCCATTGA

Upstream 100 bases:

>100_bases
AGTAATCTTTGCACCGCAACGGAGCCGGGAATCGCGCTTCGATGGGCTCATGTACCCCATGAGGTAACTTCGATCACGCA
ATCCGTCGGAGCGGATTTCC

Downstream 100 bases:

>100_bases
TGGGCTCCCCCATGTCCGGTAGGCGAATTCATCTGCGGCGGACCGACTCCCGGCGGCGCGAAGAGGCGTTGTGCCGCTCC
CCGCTCGCGCGTGCCGCGGT

Product: Pili assembly chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MNSTLYRLLTAVAMGVVCALAAQAAQAAITIVGTRVVYPAQERQVSVRLDNVDDHPVLVQAWLDTGDASAAPNEIKVPFV
LLPSIFRVEPHRGQAMRIMFTGGEMPTDREVVYWLNVLEIPPVPPDADQRSMIQLAFRTRIKMFYRPASLTETPTVQIKQ
LKWSEVANDKGQWRIRLDNPSPYYISIGRAVLTAGARTLVLQPEMAPPFGHVDLVPVAGKIEPDVPGTLTYSVLSDYGAA
EEASTQFDGAPQAKANNSH

Sequences:

>Translated_259_residues
MNSTLYRLLTAVAMGVVCALAAQAAQAAITIVGTRVVYPAQERQVSVRLDNVDDHPVLVQAWLDTGDASAAPNEIKVPFV
LLPSIFRVEPHRGQAMRIMFTGGEMPTDREVVYWLNVLEIPPVPPDADQRSMIQLAFRTRIKMFYRPASLTETPTVQIKQ
LKWSEVANDKGQWRIRLDNPSPYYISIGRAVLTAGARTLVLQPEMAPPFGHVDLVPVAGKIEPDVPGTLTYSVLSDYGAA
EEASTQFDGAPQAKANNSH
>Mature_259_residues
MNSTLYRLLTAVAMGVVCALAAQAAQAAITIVGTRVVYPAQERQVSVRLDNVDDHPVLVQAWLDTGDASAAPNEIKVPFV
LLPSIFRVEPHRGQAMRIMFTGGEMPTDREVVYWLNVLEIPPVPPDADQRSMIQLAFRTRIKMFYRPASLTETPTVQIKQ
LKWSEVANDKGQWRIRLDNPSPYYISIGRAVLTAGARTLVLQPEMAPPFGHVDLVPVAGKIEPDVPGTLTYSVLSDYGAA
EEASTQFDGAPQAKANNSH

Specific function: Probably mediates assembly of a pilin [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1786333, Length=236, Percent_Identity=38.5593220338983, Blast_Score=177, Evalue=5e-46,
Organism=Escherichia coli, GI1788428, Length=155, Percent_Identity=36.7741935483871, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1790771, Length=236, Percent_Identity=30.5084745762712, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1786743, Length=238, Percent_Identity=30.2521008403361, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1789532, Length=240, Percent_Identity=27.5, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1787171, Length=233, Percent_Identity=27.4678111587983, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1786936, Length=198, Percent_Identity=30.3030303030303, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1788677, Length=226, Percent_Identity=29.2035398230088, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI87082203, Length=232, Percent_Identity=24.5689655172414, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI87081806, Length=190, Percent_Identity=27.8947368421053, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 28405; Mature: 28405

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSTLYRLLTAVAMGVVCALAAQAAQAAITIVGTRVVYPAQERQVSVRLDNVDDHPVLVQ
CCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCCCCEEEEEECCCCCCCEEEE
AWLDTGDASAAPNEIKVPFVLLPSIFRVEPHRGQAMRIMFTGGEMPTDREVVYWLNVLEI
EEECCCCCCCCCCCEECCEEECCHHEEECCCCCCEEEEEEECCCCCCCCEEEEEEEEEEC
PPVPPDADQRSMIQLAFRTRIKMFYRPASLTETPTVQIKQLKWSEVANDKGQWRIRLDNP
CCCCCCCCHHHHHHHHHHHHHHHEECCCCCCCCCCEEEEEEEHHHHCCCCCCEEEEECCC
SPYYISIGRAVLTAGARTLVLQPEMAPPFGHVDLVPVAGKIEPDVPGTLTYSVLSDYGAA
CCEEEEECHHHHHCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEHHHHHCCCCC
EEASTQFDGAPQAKANNSH
CCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNSTLYRLLTAVAMGVVCALAAQAAQAAITIVGTRVVYPAQERQVSVRLDNVDDHPVLVQ
CCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCCCCEEEEEECCCCCCCEEEE
AWLDTGDASAAPNEIKVPFVLLPSIFRVEPHRGQAMRIMFTGGEMPTDREVVYWLNVLEI
EEECCCCCCCCCCCEECCEEECCHHEEECCCCCCEEEEEEECCCCCCCCEEEEEEEEEEC
PPVPPDADQRSMIQLAFRTRIKMFYRPASLTETPTVQIKQLKWSEVANDKGQWRIRLDNP
CCCCCCCCHHHHHHHHHHHHHHHEECCCCCCCCCCEEEEEEEHHHHCCCCCCEEEEECCC
SPYYISIGRAVLTAGARTLVLQPEMAPPFGHVDLVPVAGKIEPDVPGTLTYSVLSDYGAA
CCEEEEECHHHHHCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEHHHHHCCCCC
EEASTQFDGAPQAKANNSH
CCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8102362; 8202364; 9278503 [H]