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The map label for this gene is ygfF [C]

Identifier: 238023556

GI number: 238023556

Start: 60827

End: 61642

Strand: Reverse

Name: ygfF [C]

Synonym: bglu_2g00580

Alternate gene names: 238023556

Gene position: 61642-60827 (Counterclockwise)

Preceding gene: 238023557

Following gene: 238023553

Centisome position: 2.18

GC content: 72.18

Gene sequence:

>816_bases
ATGGCACGGCACGCTCCCCCCGCCGCCTCGGCCGACGCCGCGCCGGTGGTGCTCGTGACGGGCGCCGCGCGCCGCGCGGG
CCGCGTGTTCGCGCGCCGCTTCGGCGAGCGCGGCTACCGCGTCGCCGTGCATTACGACCGCTCGGCCGACGCGGCCGACG
CCACCGCGCACGAGATCGACGCGGCCGGTGCCGCCGCCGCGGCGCTGCCGGCCGACCTGAGCGACGCCCAGGCCTGCGCG
GCGCTCGTCGATGCGGTCTACGCGCGCTTCGGGCGGCTCGACGTGCTGGTCAACAACGCGTCGGTGTTCTGGCAGGACCA
CTTCCCGAGCTTCGAGCTCGACGCGCTCGACGCCGCCTGGCAGATCAACTGCCGCGCGCCGCTGCTGCTCGCGCGGCGCT
TTCACGATCGCGCGAAGGCGGCCGGCACGCAGGGCGTGGTAATCAACGTGATCGACCAAAAGATCCGCGACAACTTCCAT
CGCGACCACTTCAGCTACACGGTCGCGAAGGCCGCGCTCGGCAACCTGACGCAGATGCTCGCGATGTCGGCCGCGCCGGT
GCTGCGCGTCAACGCGGTATTCCCGGGGCTGATGCTGCGCAGCGACGACCAGACCGAGGCCGATTTCGAGCACGCGAGCC
GCGCCTCGACGCCGCTCGCCCGGATCGCCGGACCCGACGACGTGGCGGACGCGATCCTGCTGCTGACGGGCAGTGCGTAC
AACGGCGTCGACTTCGTCGTGGACGCGGGGCAAAACCTGATCCGCGTCGATCAGGACGTGCTCTACAAGCACCGCTCGCC
GGCCACGTCACGCTGA

Upstream 100 bases:

>100_bases
CCTCGCGCATGCTCGGCACGTTCCGCAGCGATCCGGCCACGCGCCGCGAATTCCTGTCGATCGTGGCGAATCCGTCGTCG
GTCAACCTGACCAACACGTG

Downstream 100 bases:

>100_bases
GCGGCCGGCACCGGCGGCTTGCGCGCACGCTGCCGCCGCGCGGCGCGTGGTGCCGGCCGGCCACCGGCTTGCCGCCGCAG
CGCGCCCTCTCGCTTGGGCA

Product: putative dehydrogenase

Products: NA

Alternate protein names: ORFC [H]

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MARHAPPAASADAAPVVLVTGAARRAGRVFARRFGERGYRVAVHYDRSADAADATAHEIDAAGAAAAALPADLSDAQACA
ALVDAVYARFGRLDVLVNNASVFWQDHFPSFELDALDAAWQINCRAPLLLARRFHDRAKAAGTQGVVINVIDQKIRDNFH
RDHFSYTVAKAALGNLTQMLAMSAAPVLRVNAVFPGLMLRSDDQTEADFEHASRASTPLARIAGPDDVADAILLLTGSAY
NGVDFVVDAGQNLIRVDQDVLYKHRSPATSR

Sequences:

>Translated_271_residues
MARHAPPAASADAAPVVLVTGAARRAGRVFARRFGERGYRVAVHYDRSADAADATAHEIDAAGAAAAALPADLSDAQACA
ALVDAVYARFGRLDVLVNNASVFWQDHFPSFELDALDAAWQINCRAPLLLARRFHDRAKAAGTQGVVINVIDQKIRDNFH
RDHFSYTVAKAALGNLTQMLAMSAAPVLRVNAVFPGLMLRSDDQTEADFEHASRASTPLARIAGPDDVADAILLLTGSAY
NGVDFVVDAGQNLIRVDQDVLYKHRSPATSR
>Mature_270_residues
ARHAPPAASADAAPVVLVTGAARRAGRVFARRFGERGYRVAVHYDRSADAADATAHEIDAAGAAAAALPADLSDAQACAA
LVDAVYARFGRLDVLVNNASVFWQDHFPSFELDALDAAWQINCRAPLLLARRFHDRAKAAGTQGVVINVIDQKIRDNFHR
DHFSYTVAKAALGNLTQMLAMSAAPVLRVNAVFPGLMLRSDDQTEADFEHASRASTPLARIAGPDDVADAILLLTGSAYN
GVDFVVDAGQNLIRVDQDVLYKHRSPATSR

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7705925, Length=223, Percent_Identity=29.5964125560538, Blast_Score=70, Evalue=2e-12,
Organism=Escherichia coli, GI2367175, Length=226, Percent_Identity=29.646017699115, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788459, Length=242, Percent_Identity=25.2066115702479, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1787891, Length=239, Percent_Identity=27.1966527196653, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789057, Length=189, Percent_Identity=31.2169312169312, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789208, Length=207, Percent_Identity=28.5024154589372, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787905, Length=225, Percent_Identity=28.8888888888889, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790717, Length=244, Percent_Identity=25.8196721311475, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787335, Length=229, Percent_Identity=27.0742358078603, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17562910, Length=263, Percent_Identity=27.3764258555133, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI71994600, Length=255, Percent_Identity=28.6274509803922, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI193204405, Length=264, Percent_Identity=27.6515151515151, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71994604, Length=254, Percent_Identity=27.5590551181102, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17560220, Length=266, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17559104, Length=266, Percent_Identity=26.3157894736842, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17562906, Length=264, Percent_Identity=27.2727272727273, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17562904, Length=264, Percent_Identity=24.2424242424242, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17560150, Length=258, Percent_Identity=25.1937984496124, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17562908, Length=264, Percent_Identity=26.5151515151515, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17531453, Length=264, Percent_Identity=26.8939393939394, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17560332, Length=262, Percent_Identity=25.5725190839695, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17562990, Length=258, Percent_Identity=25.1937984496124, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI23397609, Length=250, Percent_Identity=30.4, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI28571526, Length=249, Percent_Identity=29.3172690763052, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI21357041, Length=248, Percent_Identity=28.2258064516129, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24644337, Length=254, Percent_Identity=27.9527559055118, Blast_Score=64, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 29028; Mature: 28897

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARHAPPAASADAAPVVLVTGAARRAGRVFARRFGERGYRVAVHYDRSADAADATAHEID
CCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHH
AAGAAAAALPADLSDAQACAALVDAVYARFGRLDVLVNNASVFWQDHFPSFELDALDAAW
HCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCEEEEECCCCCCCCCCCCCEE
QINCRAPLLLARRFHDRAKAAGTQGVVINVIDQKIRDNFHRDHFSYTVAKAALGNLTQML
EECCCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMSAAPVLRVNAVFPGLMLRSDDQTEADFEHASRASTPLARIAGPDDVADAILLLTGSAY
HHHCCCCEEEHHHCCCCEEECCCCCHHHHHHHHHCCCCHHHHCCCHHHHHEEHEEECCCC
NGVDFVVDAGQNLIRVDQDVLYKHRSPATSR
CCEEEEEECCCCCEECCHHHHHHCCCCCCCC
>Mature Secondary Structure 
ARHAPPAASADAAPVVLVTGAARRAGRVFARRFGERGYRVAVHYDRSADAADATAHEID
CCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHH
AAGAAAAALPADLSDAQACAALVDAVYARFGRLDVLVNNASVFWQDHFPSFELDALDAAW
HCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCEEEEECCCCCCCCCCCCCEE
QINCRAPLLLARRFHDRAKAAGTQGVVINVIDQKIRDNFHRDHFSYTVAKAALGNLTQML
EECCCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMSAAPVLRVNAVFPGLMLRSDDQTEADFEHASRASTPLARIAGPDDVADAILLLTGSAY
HHHCCCCEEEHHHCCCCEEECCCCCHHHHHHHHHCCCCHHHHCCCHHHHHEEHEEECCCC
NGVDFVVDAGQNLIRVDQDVLYKHRSPATSR
CCEEEEEECCCCCEECCHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8868443 [H]