Click here to switch to the map view.

The map label for this gene is arpC [H]

Identifier: 238023533

GI number: 238023533

Start: 37476

End: 39173

Strand: Direct

Name: arpC [H]

Synonym: bglu_2g00340

Alternate gene names: 238023533

Gene position: 37476-39173 (Clockwise)

Preceding gene: 238023532

Following gene: 238023537

Centisome position: 1.33

GC content: 75.97

Gene sequence:

>1698_bases
ATGAAGCATCAGGCACCGCAGGGCCCGCGGGCTTTCCGGGCACGCACGCGCGCACGCGCACTCGCCTGGCCGGCCGCGCT
GGCCGGCTGTCTGGCGCTGGCCGCCTGCACCGTCGGGCCCGATTTCCAGCCGCCGCGCGCGGGCCTGCCCGCGCAGTGGC
ACGACCTGCGGGGCGCCAGCGGCGCGGCTGCGGCCGGGCCGGCCACGGGCGCCGCGCCGCTGGCCGGCGCCTCGCTGACC
GAGCCCGCCTCGGCGCCCGACGCCGGCGTGGATTCGAAGCCGGTGGTGGATGCCGATCCCGATCCGCGCTGGTGGCAGGC
GTTCCACGATCCGCTGCTCGACCGGCTCGTCGCGCGCGCGGCGCACGACAACCTCGATCTGCAGACGGCCGTGCTGCGCA
TCGCCGAGGCGCGCGAGCAACTGCATCAGGCCGCCGCGCAGGGGCTGCCGAACGTGCGCGCCACCGCCAGCTACCAGCGC
GAGCAGCTCGGCGTGAAGGGCATCCTGGAGGACGAGGGCGTCAGCGACCGGATCGACCGGCTCGGCGCGCCGGGCTCGGC
GCTCGCCGGCGCGGTGCCGGGCGGCAGCGCGGCGATCCGGCAGGGCGCGAGCCGGGCGCTCGATGCGATCTCGTCGCCGA
CCAATCTCTGGCAGGCCGGCTTCGACGCCTCGTGGGAGCTCGACCTGTTCGGCCGGGTGCGCCGCTCGGTGGAGGCGGCC
GGCGCCGAGGCCGGCGCGGCCGTGGCGGGCCGCGACGACGCGCTGCTCTCGCTCGAGGCCGAGGTCGCGCAGACCTACCT
GCAGTATCGTGGCGCGCAGGCGCTGCGCGCGCTGGCGGTGGAGCTGGCGCAGTCGCAGGGCGAGCTGGCCGACCTCACGC
GCAATCGCGCCGCGCACGGCCTGACGAGCCAGCTCGACGTGCGCAGCGCCGAGGCGCAGCTCGCCACGATCCGCGCGCAG
CTGCCGCAGTACGACCAGCAGCTCGCCACCCTGCGCAATGGCCTCGCGTATCTGGTGGGCGAGGCGCCGGGCGCGCTCGA
CGCCGAGCTCGACGCGCCCGGCGCGCTGCCGGCGCTGCCGCCGACGGTGCCGGTGGGCTTGCCGTCCACGCTCGCGCGGC
GGCGGCCCGACGTGCGCCGCGCCGAACTCGAGCTGCACGCGGCCACCGCGCAGGTCGGCGTGGCGGTTGCGCAGTTCTAT
CCCGACGTCTCGCTGACCGGGCGGATCGGGCTGCGCTCGACGCACGTGCGCGAACTCGCGCAGTGGTCGCATCTGTTCTA
CTCGGCCGGCCCGGCGATCTCGCTGCCGATCTTCTCGGGCGGCGCGCTGGTGTCGAACCTGCGGCTCTCGAAGGTGCAGC
AGCGGGAGGCCGCGCTCGCCTATCGCGGTGCCGTGCTGGTGGCGCTACGCGACGTCGACAACGCGCTCGCCGTCTACCGC
ACCGATCAGACGCGCCGCGCCGAACTCGACGATGCCGTGCGGGCCGAACGCGGCGCGCTCGACCTCGCGCGCGACAGCTA
TCGCAAGGGCCTCGTGCCGTTCCTCGACGTGCTCGATGCCGAGCGGCAGTGGTCGCAGGCGCGGCAGCAGGCGGTGCAGG
GCGAACTGCAGACCACCACCGATCTGGTCGCGCTCTACAAGGCGCTCGGCGGCGGCTGGAGTCCGGCCGCGGCCGGGTCC
GAGGCGAGCGCGTCGTGA

Upstream 100 bases:

>100_bases
GACGTGTTCGCGATCCTGGCGGTGTTCTGCGCGATCTGCATCCCGTTGACGTTCATGTTCTCGCCGGTGAAGGCGGCGCA
GGGCGGAGGAGGACATTGAG

Downstream 100 bases:

>100_bases
CAGCGTCATGGGCCGCGGTGGAACCCGGTGCGCGGCAGCGCGGCGAACATCGGCGACTACTCGCGCAGCGACCAGCTCAC
GCCGCCGCCGCCATGGCTCA

Product: NodT family RND efflux system outer membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 565; Mature: 565

Protein sequence:

>565_residues
MKHQAPQGPRAFRARTRARALAWPAALAGCLALAACTVGPDFQPPRAGLPAQWHDLRGASGAAAAGPATGAAPLAGASLT
EPASAPDAGVDSKPVVDADPDPRWWQAFHDPLLDRLVARAAHDNLDLQTAVLRIAEAREQLHQAAAQGLPNVRATASYQR
EQLGVKGILEDEGVSDRIDRLGAPGSALAGAVPGGSAAIRQGASRALDAISSPTNLWQAGFDASWELDLFGRVRRSVEAA
GAEAGAAVAGRDDALLSLEAEVAQTYLQYRGAQALRALAVELAQSQGELADLTRNRAAHGLTSQLDVRSAEAQLATIRAQ
LPQYDQQLATLRNGLAYLVGEAPGALDAELDAPGALPALPPTVPVGLPSTLARRRPDVRRAELELHAATAQVGVAVAQFY
PDVSLTGRIGLRSTHVRELAQWSHLFYSAGPAISLPIFSGGALVSNLRLSKVQQREAALAYRGAVLVALRDVDNALAVYR
TDQTRRAELDDAVRAERGALDLARDSYRKGLVPFLDVLDAERQWSQARQQAVQGELQTTTDLVALYKALGGGWSPAAAGS
EASAS

Sequences:

>Translated_565_residues
MKHQAPQGPRAFRARTRARALAWPAALAGCLALAACTVGPDFQPPRAGLPAQWHDLRGASGAAAAGPATGAAPLAGASLT
EPASAPDAGVDSKPVVDADPDPRWWQAFHDPLLDRLVARAAHDNLDLQTAVLRIAEAREQLHQAAAQGLPNVRATASYQR
EQLGVKGILEDEGVSDRIDRLGAPGSALAGAVPGGSAAIRQGASRALDAISSPTNLWQAGFDASWELDLFGRVRRSVEAA
GAEAGAAVAGRDDALLSLEAEVAQTYLQYRGAQALRALAVELAQSQGELADLTRNRAAHGLTSQLDVRSAEAQLATIRAQ
LPQYDQQLATLRNGLAYLVGEAPGALDAELDAPGALPALPPTVPVGLPSTLARRRPDVRRAELELHAATAQVGVAVAQFY
PDVSLTGRIGLRSTHVRELAQWSHLFYSAGPAISLPIFSGGALVSNLRLSKVQQREAALAYRGAVLVALRDVDNALAVYR
TDQTRRAELDDAVRAERGALDLARDSYRKGLVPFLDVLDAERQWSQARQQAVQGELQTTTDLVALYKALGGGWSPAAAGS
EASAS
>Mature_565_residues
MKHQAPQGPRAFRARTRARALAWPAALAGCLALAACTVGPDFQPPRAGLPAQWHDLRGASGAAAAGPATGAAPLAGASLT
EPASAPDAGVDSKPVVDADPDPRWWQAFHDPLLDRLVARAAHDNLDLQTAVLRIAEAREQLHQAAAQGLPNVRATASYQR
EQLGVKGILEDEGVSDRIDRLGAPGSALAGAVPGGSAAIRQGASRALDAISSPTNLWQAGFDASWELDLFGRVRRSVEAA
GAEAGAAVAGRDDALLSLEAEVAQTYLQYRGAQALRALAVELAQSQGELADLTRNRAAHGLTSQLDVRSAEAQLATIRAQ
LPQYDQQLATLRNGLAYLVGEAPGALDAELDAPGALPALPPTVPVGLPSTLARRRPDVRRAELELHAATAQVGVAVAQFY
PDVSLTGRIGLRSTHVRELAQWSHLFYSAGPAISLPIFSGGALVSNLRLSKVQQREAALAYRGAVLVALRDVDNALAVYR
TDQTRRAELDDAVRAERGALDLARDSYRKGLVPFLDVLDAERQWSQARQQAVQGELQTTTDLVALYKALGGGWSPAAAGS
EASAS

Specific function: The outer membrane component of an antibiotic efflux pump. Confers resistance to numerous structurally unrelated antibiotics such as carbenicillin, chloramphenicol, erythromycin, novobiocin, streptomycin and tetracycline. Is not involved in organic solven

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI1786785, Length=530, Percent_Identity=25.8490566037736, Blast_Score=147, Evalue=2e-36,
Organism=Escherichia coli, GI2367348, Length=493, Percent_Identity=26.1663286004057, Blast_Score=113, Evalue=4e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010131 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 59368; Mature: 59368

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.2 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.2 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHQAPQGPRAFRARTRARALAWPAALAGCLALAACTVGPDFQPPRAGLPAQWHDLRGAS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCC
GAAAAGPATGAAPLAGASLTEPASAPDAGVDSKPVVDADPDPRWWQAFHDPLLDRLVARA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
AHDNLDLQTAVLRIAEAREQLHQAAAQGLPNVRATASYQREQLGVKGILEDEGVSDRIDR
HCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHH
LGAPGSALAGAVPGGSAAIRQGASRALDAISSPTNLWQAGFDASWELDLFGRVRRSVEAA
CCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHC
GAEAGAAVAGRDDALLSLEAEVAQTYLQYRGAQALRALAVELAQSQGELADLTRNRAAHG
CCCCCCEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
LTSQLDVRSAEAQLATIRAQLPQYDQQLATLRNGLAYLVGEAPGALDAELDAPGALPALP
CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCC
PTVPVGLPSTLARRRPDVRRAELELHAATAQVGVAVAQFYPDVSLTGRIGLRSTHVRELA
CCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHH
QWSHLFYSAGPAISLPIFSGGALVSNLRLSKVQQREAALAYRGAVLVALRDVDNALAVYR
HHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEEE
TDQTRRAELDDAVRAERGALDLARDSYRKGLVPFLDVLDAERQWSQARQQAVQGELQTTT
CCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
DLVALYKALGGGWSPAAAGSEASAS
HHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKHQAPQGPRAFRARTRARALAWPAALAGCLALAACTVGPDFQPPRAGLPAQWHDLRGAS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCC
GAAAAGPATGAAPLAGASLTEPASAPDAGVDSKPVVDADPDPRWWQAFHDPLLDRLVARA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
AHDNLDLQTAVLRIAEAREQLHQAAAQGLPNVRATASYQREQLGVKGILEDEGVSDRIDR
HCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHH
LGAPGSALAGAVPGGSAAIRQGASRALDAISSPTNLWQAGFDASWELDLFGRVRRSVEAA
CCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHC
GAEAGAAVAGRDDALLSLEAEVAQTYLQYRGAQALRALAVELAQSQGELADLTRNRAAHG
CCCCCCEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
LTSQLDVRSAEAQLATIRAQLPQYDQQLATLRNGLAYLVGEAPGALDAELDAPGALPALP
CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCC
PTVPVGLPSTLARRRPDVRRAELELHAATAQVGVAVAQFYPDVSLTGRIGLRSTHVRELA
CCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHH
QWSHLFYSAGPAISLPIFSGGALVSNLRLSKVQQREAALAYRGAVLVALRDVDNALAVYR
HHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEEE
TDQTRRAELDDAVRAERGALDLARDSYRKGLVPFLDVLDAERQWSQARQQAVQGELQTTT
CCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
DLVALYKALGGGWSPAAAGSEASAS
HHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11160799 [H]