| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is xanP [H]
Identifier: 238023528
GI number: 238023528
Start: 28195
End: 29565
Strand: Reverse
Name: xanP [H]
Synonym: bglu_2g00280
Alternate gene names: 238023528
Gene position: 29565-28195 (Counterclockwise)
Preceding gene: 238023529
Following gene: 238023527
Centisome position: 1.05
GC content: 70.24
Gene sequence:
>1371_bases ATGTCATCGATCCAGCCCGACCGCACCGCCCCCGCCGCCGTCCCCGATCTGGTCTACGGCCCCGACGACCGCCCCGCGCC CGCCATCGCGTTCGTCGCCGCGCTCCAGCACCTGCTCGCAATCCTGGTGCCGATCGTCACGCCGGGCCTGCTGATCTGCC AGGCGCTCGCCGTGCCGAGCCGCGACACCACGCTGATCGTGTCGATGTCGCTGGTGATCTCGGGCATCGCCACCTTCCTG CAGTGCCGCCGCTTCGGCCCGCTCGGCGCCGGCCTGCTGATCGTGCAGGGCACCAGCTTCAATTTCGTCGGCCCGCTGAT CGCGGGCGGCAGCCTGATGGTCAAGCAGGGCACGCCGGTGGCCACCGTGATGGCGGCGATCTTCGGCACGGTGATCGCCG GCTCGTTCGTGGAGATGGCCGTGTCGCGCGTGCTGCCGTTCGTCAAGCGCCTCATCACGCCGCTCGTGACCGGCATCGTG GTGCTGCTGATCGGCCTCACGCTGATCAAGGTCGGCCTCGTCAGCATGGGCGGCGGCTACGGCGCGATGGCCAACGGCAG TTTCGCGAGCGCGCAGAACCTGATGCTGTCCGGGCTCGTGCTCGGCACGATCGTCGTGCTGAACCGCGTGCCGGTGGTCT GGGTGCGCAGCACCGCGCTCGTGATCGCGCTCGCGCTCGGCTATCTGGCGGCCGGCGCGGCGGGCCGGCTCGACTTCACC GGCGCGCGCGAGGCGGCGCTGTTCCAGATCCCCACGCCGCTGCATTTCGGGCTCGGCTTCTCGTGGTCGCTGTTCGTGCC GATGCTGGTGATCTACCTCGTCACCTCGCTCGAGGCGATCGGCGACGTCACCGCCACCAGCAAGGTATCGCGCGAGCCGG TGGAAGGGCCGCTGTGGATGCGCCGCATCAAGGGCGGGGTGCTCGTCAACGGTGCCAACTCGCTGCTGGCCGGCGTGTTC AATACGTTTCCGAGTTCGGTGTTCGCGCAGAACAACGGCGTGATCCAGCTCACCGGCATCGCGAGCCGGCACGTCGGGCT CTGGATCGCCGGCATGCTGGTGGTGCTCGGGCTGTTTCCGGTCGTGGCCGGCGTGCTGCAGGCGGTGCCCGAGCCCGTGC TCGGCGGCGCCGCGATGGTGATGTTCGGCGCGGTGGCCGCCTCGGGCATCAACATCCTGGCCGGCGTGAAGCTCGACCGC CGCGCGCTGCTGATCGTGGCCGTGTCGCTGGCGCTCGGGCTCGGCGTCTCGCAGGTGCCGGAGATCCTCACCCACCTGCC GAGCGCGCTGAAGAACGTGCTGGCCTCGGGCGTCGCCACCGGCGGGGTCTGCGCGCTCGTGATGAACTGGTTCCTGCCCG AGCAGGACTAG
Upstream 100 bases:
>100_bases CCCGCGGTGCCCGGGGCGGGCTGCGCGCCGCTTTTTTGGCGCGCGGCCCAGCCGGTAAAATCCTCCGCTTCCCCTTCGCC ACCGCCCCGGCCTTCCCGCG
Downstream 100 bases:
>100_bases GCAGCGCCCGCCCGCCTGTCAGGTCAGGCAAGGCGGCGCGCCGGCCCTGCTTCGCCCGCAGGCCGGCCAGGGCCGGGCCC GTCGAGGGCAGCAACGCGTT
Product: Xanthine/uracil permease family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 456; Mature: 455
Protein sequence:
>456_residues MSSIQPDRTAPAAVPDLVYGPDDRPAPAIAFVAALQHLLAILVPIVTPGLLICQALAVPSRDTTLIVSMSLVISGIATFL QCRRFGPLGAGLLIVQGTSFNFVGPLIAGGSLMVKQGTPVATVMAAIFGTVIAGSFVEMAVSRVLPFVKRLITPLVTGIV VLLIGLTLIKVGLVSMGGGYGAMANGSFASAQNLMLSGLVLGTIVVLNRVPVVWVRSTALVIALALGYLAAGAAGRLDFT GAREAALFQIPTPLHFGLGFSWSLFVPMLVIYLVTSLEAIGDVTATSKVSREPVEGPLWMRRIKGGVLVNGANSLLAGVF NTFPSSVFAQNNGVIQLTGIASRHVGLWIAGMLVVLGLFPVVAGVLQAVPEPVLGGAAMVMFGAVAASGINILAGVKLDR RALLIVAVSLALGLGVSQVPEILTHLPSALKNVLASGVATGGVCALVMNWFLPEQD
Sequences:
>Translated_456_residues MSSIQPDRTAPAAVPDLVYGPDDRPAPAIAFVAALQHLLAILVPIVTPGLLICQALAVPSRDTTLIVSMSLVISGIATFL QCRRFGPLGAGLLIVQGTSFNFVGPLIAGGSLMVKQGTPVATVMAAIFGTVIAGSFVEMAVSRVLPFVKRLITPLVTGIV VLLIGLTLIKVGLVSMGGGYGAMANGSFASAQNLMLSGLVLGTIVVLNRVPVVWVRSTALVIALALGYLAAGAAGRLDFT GAREAALFQIPTPLHFGLGFSWSLFVPMLVIYLVTSLEAIGDVTATSKVSREPVEGPLWMRRIKGGVLVNGANSLLAGVF NTFPSSVFAQNNGVIQLTGIASRHVGLWIAGMLVVLGLFPVVAGVLQAVPEPVLGGAAMVMFGAVAASGINILAGVKLDR RALLIVAVSLALGLGVSQVPEILTHLPSALKNVLASGVATGGVCALVMNWFLPEQD >Mature_455_residues SSIQPDRTAPAAVPDLVYGPDDRPAPAIAFVAALQHLLAILVPIVTPGLLICQALAVPSRDTTLIVSMSLVISGIATFLQ CRRFGPLGAGLLIVQGTSFNFVGPLIAGGSLMVKQGTPVATVMAAIFGTVIAGSFVEMAVSRVLPFVKRLITPLVTGIVV LLIGLTLIKVGLVSMGGGYGAMANGSFASAQNLMLSGLVLGTIVVLNRVPVVWVRSTALVIALALGYLAAGAAGRLDFTG AREAALFQIPTPLHFGLGFSWSLFVPMLVIYLVTSLEAIGDVTATSKVSREPVEGPLWMRRIKGGVLVNGANSLLAGVFN TFPSSVFAQNNGVIQLTGIASRHVGLWIAGMLVVLGLFPVVAGVLQAVPEPVLGGAAMVMFGAVAASGINILAGVKLDRR ALLIVAVSLALGLGVSQVPEILTHLPSALKNVLASGVATGGVCALVMNWFLPEQD
Specific function: Specific, proton motive force-dependent high-affinity transporter for xanthine [H]
COG id: COG2233
COG function: function code F; Xanthine/uracil permeases
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the xanthine/uracil permease family. Nucleobase:cation symporter-2 (NCS2) (TC 2.A.40) subfamily [H]
Homologues:
Organism=Homo sapiens, GI44680148, Length=510, Percent_Identity=23.3333333333333, Blast_Score=77, Evalue=4e-14, Organism=Homo sapiens, GI40316845, Length=510, Percent_Identity=23.3333333333333, Blast_Score=77, Evalue=4e-14, Organism=Homo sapiens, GI44680145, Length=466, Percent_Identity=23.3905579399142, Blast_Score=70, Evalue=4e-12, Organism=Homo sapiens, GI44680143, Length=470, Percent_Identity=23.1914893617021, Blast_Score=68, Evalue=1e-11, Organism=Escherichia coli, GI1790087, Length=459, Percent_Identity=53.1590413943355, Blast_Score=471, Evalue=1e-134, Organism=Escherichia coli, GI87082178, Length=438, Percent_Identity=43.8356164383562, Blast_Score=345, Evalue=5e-96, Organism=Escherichia coli, GI87082181, Length=443, Percent_Identity=29.7968397291196, Blast_Score=164, Evalue=2e-41, Organism=Escherichia coli, GI1788843, Length=203, Percent_Identity=26.6009852216749, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI87081818, Length=414, Percent_Identity=26.8115942028986, Blast_Score=69, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17558856, Length=410, Percent_Identity=25.1219512195122, Blast_Score=78, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006042 - InterPro: IPR006043 [H]
Pfam domain/function: PF00860 Xan_ur_permease [H]
EC number: NA
Molecular weight: Translated: 46873; Mature: 46742
Theoretical pI: Translated: 10.07; Mature: 10.07
Prosite motif: PS00879 ODR_DC_2_2 ; PS01116 XANTH_URACIL_PERMASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSIQPDRTAPAAVPDLVYGPDDRPAPAIAFVAALQHLLAILVPIVTPGLLICQALAVPS CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCC RDTTLIVSMSLVISGIATFLQCRRFGPLGAGLLIVQGTSFNFVGPLIAGGSLMVKQGTPV CCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHCCCCEEEECCCCH ATVMAAIFGTVIAGSFVEMAVSRVLPFVKRLITPLVTGIVVLLIGLTLIKVGLVSMGGGY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GAMANGSFASAQNLMLSGLVLGTIVVLNRVPVVWVRSTALVIALALGYLAAGAAGRLDFT CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCC GAREAALFQIPTPLHFGLGFSWSLFVPMLVIYLVTSLEAIGDVTATSKVSREPVEGPLWM CCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCHHHH RRIKGGVLVNGANSLLAGVFNTFPSSVFAQNNGVIQLTGIASRHVGLWIAGMLVVLGLFP HHHCCCEEEECHHHHHHHHHHHCCHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHH VVAGVLQAVPEPVLGGAAMVMFGAVAASGINILAGVKLDRRALLIVAVSLALGLGVSQVP HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCHHHHH EILTHLPSALKNVLASGVATGGVCALVMNWFLPEQD HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCC >Mature Secondary Structure SSIQPDRTAPAAVPDLVYGPDDRPAPAIAFVAALQHLLAILVPIVTPGLLICQALAVPS CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCC RDTTLIVSMSLVISGIATFLQCRRFGPLGAGLLIVQGTSFNFVGPLIAGGSLMVKQGTPV CCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHCCCCEEEECCCCH ATVMAAIFGTVIAGSFVEMAVSRVLPFVKRLITPLVTGIVVLLIGLTLIKVGLVSMGGGY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GAMANGSFASAQNLMLSGLVLGTIVVLNRVPVVWVRSTALVIALALGYLAAGAAGRLDFT CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCC GAREAALFQIPTPLHFGLGFSWSLFVPMLVIYLVTSLEAIGDVTATSKVSREPVEGPLWM CCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCHHHH RRIKGGVLVNGANSLLAGVFNTFPSSVFAQNNGVIQLTGIASRHVGLWIAGMLVVLGLFP HHHCCCEEEECHHHHHHHHHHHCCHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHH VVAGVLQAVPEPVLGGAAMVMFGAVAASGINILAGVKLDRRALLIVAVSLALGLGVSQVP HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCHHHHH EILTHLPSALKNVLASGVATGGVCALVMNWFLPEQD HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]