| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
Click here to switch to the map view.
The map label for this gene is mod [H]
Identifier: 237814438
GI number: 237814438
Start: 4053999
End: 4056014
Strand: Direct
Name: mod [H]
Synonym: GBP346_A4236
Alternate gene names: 237814438
Gene position: 4053999-4056014 (Clockwise)
Preceding gene: 237814436
Following gene: 237814439
Centisome position: 98.91
GC content: 68.3
Gene sequence:
>2016_bases ATGATGCAAAAACTCGATGCGGCGAGCCCGGAGGCGCAATCCGCGGATCTCGTGGCCGCCAACGTCGAGCGCCTGAAGGC GCTCTTTCCGGACGTGGTGACCGAAGGGCCGGACGGCGCGTCGGTGAATCTCGACGCGCTCGCGGCGCTGGTGGGCGCGA GCGCGGCGGCCGCGGCCGACGCCGATGAGAAGTACGGCCTGAACTGGCACGGCAAGCGGCGCGCGCGCCGGCTCGCGCTC ACGCCGTCGACGGGCACGCTGCGCCCGTGCCCGCGCGAGAGCGCCGGCTGGGCGTCGACGCGCAACCTGATGATCGAGGG CGAGAACCTCGAGGTGCTGAAGCTGCTGCAGAAGAGCTACGCGGGGCGCGTGAAGCTCGTCTACATCGATCCGCCGTACA ACACCGGCAAGGATTTCGTCTATCCGGACAATTTCACCGACAGCCTGCGCCATTATCTCGAGCTGACCGGCCAGACGACG GGCGGCAAGCGGGTCACCAGCCACACCGACGCGAGCGGGCGCTTCCACACCGACTGGCTGAACATGATCTACCCGCGCCT GAAGCTCGCGCGCGATCTGCTCACCGAGGACGGCGTGATCGCCGTGCACATCGACGAGCACGAACAGCACGCGCTCGTGC TCGTGATGCGCGAGATCTTCGGCGAAGACAACGAGCTCGGCGTCGCGGTGTGGGACAAGCGCAATCCGAAGGGCGATGCG CGCGGGATCGCGTACCAGCACGAATCGATCGTGCTGTTCGCGCGCGACGCTGAACGGCTGTTCGAGCGTGCGCCGCTCAA GCGCCCGAAACGCAACGCGCAGCGCATGCTGGACGCGGCGCGCGAGGCGGTCGCCGGCGCGGCGACGATCGCGGACGCGA ACGCCGCGTACCGCGGCTGGGTGAAGTCTCAGACGACGCTGTCGGGCGGCGAGGCGATGTACGACCGAATCTCCGCCGAC GGGCGCGTGTACCGCCTCGTGTCGATGGCGTGGCCGAACAAGAAGAAGGCGCCCGACGACTACTTCGTGCCGCTCGTGCA TCCGGTGACGGGCAAGCCGTGCCCCGTGCCCGAGCGCGGCTGGCGCAACCCGCCCGCGACGATGCGCGCGCTCATCGACA AGGGCCTCGTCGAATTCGGCGCGGACGAGACCACGCAGCCGCAGCGGATCTATTTCCTCGACGAGAACATGTACGAGAAC GTGCCTTCGGTGCTACCGTTCGGCGGCTCGGACGACGCGCTGATGAAGTCGCTCGGCATTCCTTTCGATCAGCCCAAGCC CGTCGAATTCGCCGCGTCGATCATCGGCTGGTGCACCGACGGCGACGATCTGATCGTCGACTTCTTCGGCGGCTCCGGCA CGACCGCGCACGCGGTGATGGCGCTGAACGCGGCCGACGGCGGCCATCGCCGCTACGTGCTCGTGCAACTGCCCGAGCCG CTCGACGCCGACAGCAAGGACCAGAAGGCCGCCGCCGATTTCTGCGCGGCGCAGCGCGTGCCGCTCAATCTCGCCGAGCT GACGAAGGAGCGGCTGCGGCGCGCGGCGGCGCGCATCGCGGCCGAGCATCCGGGCACGCGGGCGGATCTCGGTTTTCGCG TGTTCAGGCTCGATTCGACGAACGTCTCCGAATGGGACCCGCGCGGCGACGACATCCAGCAGTCGCTGTTCGCGGCCGTC GAGCACATCAAGCCGAACCGCTCCGAGGAAGATCTGCTGTACGAACTGATGCTCAAGCTCGGCCTCGATCTGTGCGCGCC GATCGACGCACGCATGATCGCCGGCAAGGCGGTCTACATGATCGACGGCGCGATCGTCGCGTGCTTCGATGCGCATATCG ACCGCGCGTCGACCGACGCGCTCGGCGAGGGCATCGTCGGGCTGATCGCCGAAGCGGCCGACGCGCGCGAGGTGACCTGC GTGTTCCGCGACAGCGGCTTCGCGGACGACGTCGCGAAGGTGAACCTGTCGGCGATTCTCGAGCAGCACGGCGTGAAGCG CATCCGCAGCCTCTGA
Upstream 100 bases:
>100_bases CCTGCGCGTGACGGATCGCTAGCGTTTCGCCTTTGCCGCGCCGCGCGGGCCGAAAATCGGGTCCGCATGCGGGCGCGATG ACATGCAATTGATGGGAAGG
Downstream 100 bases:
>100_bases TGCGCGCACGCGAGCCACACGCAGACAAGGAAGATTGAGCATGCAGTTGCATTTCGAGTCGGATCTCGACTATCAGCTCG AAGCGATCGAGGCGGTATGC
Product: type III DNA modification methyltransferase
Products: NA
Alternate protein names: M.EcoP15I; EcoP15I methyltransferase [H]
Number of amino acids: Translated: 671; Mature: 671
Protein sequence:
>671_residues MMQKLDAASPEAQSADLVAANVERLKALFPDVVTEGPDGASVNLDALAALVGASAAAAADADEKYGLNWHGKRRARRLAL TPSTGTLRPCPRESAGWASTRNLMIEGENLEVLKLLQKSYAGRVKLVYIDPPYNTGKDFVYPDNFTDSLRHYLELTGQTT GGKRVTSHTDASGRFHTDWLNMIYPRLKLARDLLTEDGVIAVHIDEHEQHALVLVMREIFGEDNELGVAVWDKRNPKGDA RGIAYQHESIVLFARDAERLFERAPLKRPKRNAQRMLDAAREAVAGAATIADANAAYRGWVKSQTTLSGGEAMYDRISAD GRVYRLVSMAWPNKKKAPDDYFVPLVHPVTGKPCPVPERGWRNPPATMRALIDKGLVEFGADETTQPQRIYFLDENMYEN VPSVLPFGGSDDALMKSLGIPFDQPKPVEFAASIIGWCTDGDDLIVDFFGGSGTTAHAVMALNAADGGHRRYVLVQLPEP LDADSKDQKAAADFCAAQRVPLNLAELTKERLRRAAARIAAEHPGTRADLGFRVFRLDSTNVSEWDPRGDDIQQSLFAAV EHIKPNRSEEDLLYELMLKLGLDLCAPIDARMIAGKAVYMIDGAIVACFDAHIDRASTDALGEGIVGLIAEAADAREVTC VFRDSGFADDVAKVNLSAILEQHGVKRIRSL
Sequences:
>Translated_671_residues MMQKLDAASPEAQSADLVAANVERLKALFPDVVTEGPDGASVNLDALAALVGASAAAAADADEKYGLNWHGKRRARRLAL TPSTGTLRPCPRESAGWASTRNLMIEGENLEVLKLLQKSYAGRVKLVYIDPPYNTGKDFVYPDNFTDSLRHYLELTGQTT GGKRVTSHTDASGRFHTDWLNMIYPRLKLARDLLTEDGVIAVHIDEHEQHALVLVMREIFGEDNELGVAVWDKRNPKGDA RGIAYQHESIVLFARDAERLFERAPLKRPKRNAQRMLDAAREAVAGAATIADANAAYRGWVKSQTTLSGGEAMYDRISAD GRVYRLVSMAWPNKKKAPDDYFVPLVHPVTGKPCPVPERGWRNPPATMRALIDKGLVEFGADETTQPQRIYFLDENMYEN VPSVLPFGGSDDALMKSLGIPFDQPKPVEFAASIIGWCTDGDDLIVDFFGGSGTTAHAVMALNAADGGHRRYVLVQLPEP LDADSKDQKAAADFCAAQRVPLNLAELTKERLRRAAARIAAEHPGTRADLGFRVFRLDSTNVSEWDPRGDDIQQSLFAAV EHIKPNRSEEDLLYELMLKLGLDLCAPIDARMIAGKAVYMIDGAIVACFDAHIDRASTDALGEGIVGLIAEAADAREVTC VFRDSGFADDVAKVNLSAILEQHGVKRIRSL >Mature_671_residues MMQKLDAASPEAQSADLVAANVERLKALFPDVVTEGPDGASVNLDALAALVGASAAAAADADEKYGLNWHGKRRARRLAL TPSTGTLRPCPRESAGWASTRNLMIEGENLEVLKLLQKSYAGRVKLVYIDPPYNTGKDFVYPDNFTDSLRHYLELTGQTT GGKRVTSHTDASGRFHTDWLNMIYPRLKLARDLLTEDGVIAVHIDEHEQHALVLVMREIFGEDNELGVAVWDKRNPKGDA RGIAYQHESIVLFARDAERLFERAPLKRPKRNAQRMLDAAREAVAGAATIADANAAYRGWVKSQTTLSGGEAMYDRISAD GRVYRLVSMAWPNKKKAPDDYFVPLVHPVTGKPCPVPERGWRNPPATMRALIDKGLVEFGADETTQPQRIYFLDENMYEN VPSVLPFGGSDDALMKSLGIPFDQPKPVEFAASIIGWCTDGDDLIVDFFGGSGTTAHAVMALNAADGGHRRYVLVQLPEP LDADSKDQKAAADFCAAQRVPLNLAELTKERLRRAAARIAAEHPGTRADLGFRVFRLDSTNVSEWDPRGDDIQQSLFAAV EHIKPNRSEEDLLYELMLKLGLDLCAPIDARMIAGKAVYMIDGAIVACFDAHIDRASTDALGEGIVGLIAEAADAREVTC VFRDSGFADDVAKVNLSAILEQHGVKRIRSL
Specific function: Binds the system-specific DNA recognition site 5'- CAGCAC-3'. Necessary for both restriction and methylation (of one of the two A's) [H]
COG id: COG2189
COG function: function code L; Adenine specific DNA methylase Mod
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002295 - InterPro: IPR002941 - InterPro: IPR002052 [H]
Pfam domain/function: PF01555 N6_N4_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 73498; Mature: 73498
Theoretical pI: Translated: 5.56; Mature: 5.56
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMQKLDAASPEAQSADLVAANVERLKALFPDVVTEGPDGASVNLDALAALVGASAAAAAD CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHCC ADEKYGLNWHGKRRARRLALTPSTGTLRPCPRESAGWASTRNLMIEGENLEVLKLLQKSY CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH AGRVKLVYIDPPYNTGKDFVYPDNFTDSLRHYLELTGQTTGGKRVTSHTDASGRFHTDWL CCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCEEHHHH NMIYPRLKLARDLLTEDGVIAVHIDEHEQHALVLVMREIFGEDNELGVAVWDKRNPKGDA HHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC RGIAYQHESIVLFARDAERLFERAPLKRPKRNAQRMLDAAREAVAGAATIADANAAYRGW CCEEEECCEEEEEECCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCHHHHCC VKSQTTLSGGEAMYDRISADGRVYRLVSMAWPNKKKAPDDYFVPLVHPVTGKPCPVPERG CCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCC WRNPPATMRALIDKGLVEFGADETTQPQRIYFLDENMYENVPSVLPFGGSDDALMKSLGI CCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHCCCCCCCCCCCCHHHHHHHCC PFDQPKPVEFAASIIGWCTDGDDLIVDFFGGSGTTAHAVMALNAADGGHRRYVLVQLPEP CCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEEEEECCCCCCEEEEEEECCCC LDADSKDQKAAADFCAAQRVPLNLAELTKERLRRAAARIAAEHPGTRADLGFRVFRLDST CCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCC NVSEWDPRGDDIQQSLFAAVEHIKPNRSEEDLLYELMLKLGLDLCAPIDARMIAGKAVYM CCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHCCCCCHHHHCCCEEEE IDGAIVACFDAHIDRASTDALGEGIVGLIAEAADAREVTCVFRDSGFADDVAKVNLSAIL ECCCEEEEEHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHH EQHGVKRIRSL HHHHHHHHHCC >Mature Secondary Structure MMQKLDAASPEAQSADLVAANVERLKALFPDVVTEGPDGASVNLDALAALVGASAAAAAD CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHCC ADEKYGLNWHGKRRARRLALTPSTGTLRPCPRESAGWASTRNLMIEGENLEVLKLLQKSY CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH AGRVKLVYIDPPYNTGKDFVYPDNFTDSLRHYLELTGQTTGGKRVTSHTDASGRFHTDWL CCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCEEHHHH NMIYPRLKLARDLLTEDGVIAVHIDEHEQHALVLVMREIFGEDNELGVAVWDKRNPKGDA HHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC RGIAYQHESIVLFARDAERLFERAPLKRPKRNAQRMLDAAREAVAGAATIADANAAYRGW CCEEEECCEEEEEECCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCHHHHCC VKSQTTLSGGEAMYDRISADGRVYRLVSMAWPNKKKAPDDYFVPLVHPVTGKPCPVPERG CCCCCCCCCCHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCC WRNPPATMRALIDKGLVEFGADETTQPQRIYFLDENMYENVPSVLPFGGSDDALMKSLGI CCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHCCCCCCCCCCCCHHHHHHHCC PFDQPKPVEFAASIIGWCTDGDDLIVDFFGGSGTTAHAVMALNAADGGHRRYVLVQLPEP CCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEEEEECCCCCCEEEEEEECCCC LDADSKDQKAAADFCAAQRVPLNLAELTKERLRRAAARIAAEHPGTRADLGFRVFRLDST CCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCC NVSEWDPRGDDIQQSLFAAVEHIKPNRSEEDLLYELMLKLGLDLCAPIDARMIAGKAVYM CCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHCCCCCHHHHCCCEEEE IDGAIVACFDAHIDRASTDALGEGIVGLIAEAADAREVTCVFRDSGFADDVAKVNLSAIL ECCCEEEEEHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHH EQHGVKRIRSL HHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2837577 [H]