| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
Click here to switch to the map view.
The map label for this gene is 237814407
Identifier: 237814407
GI number: 237814407
Start: 4027322
End: 4028050
Strand: Direct
Name: 237814407
Synonym: GBP346_A4205
Alternate gene names: NA
Gene position: 4027322-4028050 (Clockwise)
Preceding gene: 237814406
Following gene: 237814408
Centisome position: 98.26
GC content: 71.88
Gene sequence:
>729_bases ATGAAACCAGCCGTCCGCTCTGAGCGCCGCGCGCCCGGCGAGAAACGCCCGCGGCGGGCGCGCCGCGCCTTCCGGCGAGG CGCGCGCCACGGCGCGCGCGGCTTCACGCTGATCGAAATGATGATCGCGATCACGATTCTCGCGGTGATCGCGATCCTGT CGTGGCGCGGGCTCGACCAGATCATCCGCGGCCGCGAGAAGGTGGCGGCCGCGATGGAGGACGAGCGCGTGTTCGCGCAG ATGTTCGACCAGATGCGCATCGACGCGCGGCGCGCGGCGACCGACGACGAAGCGGGCCAGCCCGCGGTGCGCGTCGCGGG CGACACGCTGCAGATCGTGCGCGAGTTCGACGCGCCGGGCGCGGCGCCACGCCTGCAGGTCGTGCGCTACCGGATTTCGA ACGGGCGCGTCGTGCGTTACGCGTCGCCGCCGATCGGCGACGTCAACGCGCTGCGCGACGCGCTGCGCGGCGGCGATACC GAAGGCTGGAGCGAGGTGGCGCTGATGCGCGGCGTCGGCATGATCAACGCGCGGCTGTACGTGCCGAAGGTCGGCTGGAC GACCAGCATGCCGGACGCCGACAACGCGCTCGAGCAGAACAACAACGCGCTCAAGGTGCCGATGCTCGGCAACGCGCCGC CGCCGCGCGCGGTGACGGGGCTCGAGGTGAGCATCGGCGCGACGTCGCTGCGCGTGCCGATCACGCGCATTTTCCTGATC GGGGAGTGA
Upstream 100 bases:
>100_bases GTGAGCTCGACGCCGAATCCCGTGTTCAGGCGCGTCGAGATCGCGGTGTCGATGAACGGACGGGCCGGCGTGCTCGCGCA GATGGTGACGGTGGTCGCGA
Downstream 100 bases:
>100_bases CATGCGCGCCTTCGCCCTCCTCGCTCGCTTCGCCTCGCCCGGCCGCCCGCGCGCGGCGCTCGGTCCGCATGCGCCGGACG CCGCGCAGCCGGCGCCGGCG
Product: general secretory pathway protein J
Products: NA
Alternate protein names: Type II Secretory Pathway Component PulJ; General Secretion Pathway Protein J; Type II Secretion System Protein J
Number of amino acids: Translated: 242; Mature: 242
Protein sequence:
>242_residues MKPAVRSERRAPGEKRPRRARRAFRRGARHGARGFTLIEMMIAITILAVIAILSWRGLDQIIRGREKVAAAMEDERVFAQ MFDQMRIDARRAATDDEAGQPAVRVAGDTLQIVREFDAPGAAPRLQVVRYRISNGRVVRYASPPIGDVNALRDALRGGDT EGWSEVALMRGVGMINARLYVPKVGWTTSMPDADNALEQNNNALKVPMLGNAPPPRAVTGLEVSIGATSLRVPITRIFLI GE
Sequences:
>Translated_242_residues MKPAVRSERRAPGEKRPRRARRAFRRGARHGARGFTLIEMMIAITILAVIAILSWRGLDQIIRGREKVAAAMEDERVFAQ MFDQMRIDARRAATDDEAGQPAVRVAGDTLQIVREFDAPGAAPRLQVVRYRISNGRVVRYASPPIGDVNALRDALRGGDT EGWSEVALMRGVGMINARLYVPKVGWTTSMPDADNALEQNNNALKVPMLGNAPPPRAVTGLEVSIGATSLRVPITRIFLI GE >Mature_242_residues MKPAVRSERRAPGEKRPRRARRAFRRGARHGARGFTLIEMMIAITILAVIAILSWRGLDQIIRGREKVAAAMEDERVFAQ MFDQMRIDARRAATDDEAGQPAVRVAGDTLQIVREFDAPGAAPRLQVVRYRISNGRVVRYASPPIGDVNALRDALRGGDT EGWSEVALMRGVGMINARLYVPKVGWTTSMPDADNALEQNNNALKVPMLGNAPPPRAVTGLEVSIGATSLRVPITRIFLI GE
Specific function: Unknown
COG id: COG4795
COG function: function code U; Type II secretory pathway, component PulJ
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26603; Mature: 26603
Theoretical pI: Translated: 11.61; Mature: 11.61
Prosite motif: PS00409 PROKAR_NTER_METHYL
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPAVRSERRAPGEKRPRRARRAFRRGARHGARGFTLIEMMIAITILAVIAILSWRGLDQ CCCCCCCHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH IIRGREKVAAAMEDERVFAQMFDQMRIDARRAATDDEAGQPAVRVAGDTLQIVREFDAPG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHCCCC AAPRLQVVRYRISNGRVVRYASPPIGDVNALRDALRGGDTEGWSEVALMRGVGMINARLY CCCHHEEEEEEECCCEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHHHCCCEEEEEEE VPKVGWTTSMPDADNALEQNNNALKVPMLGNAPPPRAVTGLEVSIGATSLRVPITRIFLI ECCCCCCCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEECCCEEECCEEEEEEE GE CC >Mature Secondary Structure MKPAVRSERRAPGEKRPRRARRAFRRGARHGARGFTLIEMMIAITILAVIAILSWRGLDQ CCCCCCCHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH IIRGREKVAAAMEDERVFAQMFDQMRIDARRAATDDEAGQPAVRVAGDTLQIVREFDAPG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHCCCC AAPRLQVVRYRISNGRVVRYASPPIGDVNALRDALRGGDTEGWSEVALMRGVGMINARLY CCCHHEEEEEEECCCEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHHHCCCEEEEEEE VPKVGWTTSMPDADNALEQNNNALKVPMLGNAPPPRAVTGLEVSIGATSLRVPITRIFLI ECCCCCCCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEECCCEEECCEEEEEEE GE CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA