| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
Click here to switch to the map view.
The map label for this gene is 237814282
Identifier: 237814282
GI number: 237814282
Start: 3904521
End: 3905198
Strand: Reverse
Name: 237814282
Synonym: GBP346_A4077
Alternate gene names: NA
Gene position: 3905198-3904521 (Counterclockwise)
Preceding gene: 237814284
Following gene: 237814281
Centisome position: 95.28
GC content: 65.34
Gene sequence:
>678_bases TTGAAAACTTCGAAGACAGTTCTGGCGTGCCTCGCGGCATCGGCCATCGTCGCATTGTCCGGCTGCGCGACCGAGGCGTC GCGCACGCTGCCCGTGCCGCCGTCGGCGAGCGCGCAGAAGCCGTTCGCCGGCAAGCCGGTCGGCATCGCGGTCGGCAAGT TCGACAACCGTTCGAGCTACATGCGCGGCATCTTCACCGACGGCGTCGACCGCCTGGGCGGCCAGGCGAAGACGATCCTC GTCACGCAGCTCCAGCAGAGCCGCCGCTTCAACGTGCTCGATCGCGAGAACCTCGACGAGATCAAGCAGGAAGCCGCGTT CATGAAGAAAGCGCAGGCGGTGAAGGGCGCGAACTATGTCGTGACGGGCGACGTCACCGAGTTCGGCCGCAAGGAAGTCG GCGATCAGCAGCTGTTCGGCATTCTCGGCCGCGGCAAGAGCCAGATCGCGTACGCGAAGGTGAATCTGAACATCGTCGAC ACGACGACGTCGGAAGTCGTTCTGTCCAGCCAGGGCGCGGGCGAATACAGCCTGTCGAACCGCGAGATCATCGGCTTCGG CGGCACGGCCGGCTACGACTCGACGCTCAACGGCAAGGTGCTCGATCTCGCGATCCAGGACGCGGTCAATCACCTCGTCG AACAGGTCGACGCGGGCGCGCTCGCGTCCGGCAAGTAG
Upstream 100 bases:
>100_bases CGTCGATTCGCGTTCGCGCGGCGCGGCGGTTCGTGCCGGCCCGTTCGGCGCGCCGCCGCCGATACCGCATGTTTAGCGAT CTCCAAGGAGGGACCATCGT
Downstream 100 bases:
>100_bases GCGCGCCGCGCGGCGCGGACGAATCCGCTCATCCATCGTTTCCATCGACAACGACAATAATGAAGAAGACCTTCAAGACG GGAGCCTGGCTGCCGGTCGC
Product: CsgG family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 225; Mature: 225
Protein sequence:
>225_residues MKTSKTVLACLAASAIVALSGCATEASRTLPVPPSASAQKPFAGKPVGIAVGKFDNRSSYMRGIFTDGVDRLGGQAKTIL VTQLQQSRRFNVLDRENLDEIKQEAAFMKKAQAVKGANYVVTGDVTEFGRKEVGDQQLFGILGRGKSQIAYAKVNLNIVD TTTSEVVLSSQGAGEYSLSNREIIGFGGTAGYDSTLNGKVLDLAIQDAVNHLVEQVDAGALASGK
Sequences:
>Translated_225_residues MKTSKTVLACLAASAIVALSGCATEASRTLPVPPSASAQKPFAGKPVGIAVGKFDNRSSYMRGIFTDGVDRLGGQAKTIL VTQLQQSRRFNVLDRENLDEIKQEAAFMKKAQAVKGANYVVTGDVTEFGRKEVGDQQLFGILGRGKSQIAYAKVNLNIVD TTTSEVVLSSQGAGEYSLSNREIIGFGGTAGYDSTLNGKVLDLAIQDAVNHLVEQVDAGALASGK >Mature_225_residues MKTSKTVLACLAASAIVALSGCATEASRTLPVPPSASAQKPFAGKPVGIAVGKFDNRSSYMRGIFTDGVDRLGGQAKTIL VTQLQQSRRFNVLDRENLDEIKQEAAFMKKAQAVKGANYVVTGDVTEFGRKEVGDQQLFGILGRGKSQIAYAKVNLNIVD TTTSEVVLSSQGAGEYSLSNREIIGFGGTAGYDSTLNGKVLDLAIQDAVNHLVEQVDAGALASGK
Specific function: Unknown
COG id: COG1462
COG function: function code M; Uncharacterized protein involved in formation of curli polymers
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005534 - InterPro: IPR007195 [H]
Pfam domain/function: PF03783 CsgG [H]
EC number: NA
Molecular weight: Translated: 23673; Mature: 23673
Theoretical pI: Translated: 9.06; Mature: 9.06
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTSKTVLACLAASAIVALSGCATEASRTLPVPPSASAQKPFAGKPVGIAVGKFDNRSSY CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHH MRGIFTDGVDRLGGQAKTILVTQLQQSRRFNVLDRENLDEIKQEAAFMKKAQAVKGANYV HHHHHHHHHHHHCCCCEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE VTGDVTEFGRKEVGDQQLFGILGRGKSQIAYAKVNLNIVDTTTSEVVLSSQGAGEYSLSN EECCHHHHHHHHCCHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCEEEECCCCCCEECCC REIIGFGGTAGYDSTLNGKVLDLAIQDAVNHLVEQVDAGALASGK CEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MKTSKTVLACLAASAIVALSGCATEASRTLPVPPSASAQKPFAGKPVGIAVGKFDNRSSY CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHH MRGIFTDGVDRLGGQAKTILVTQLQQSRRFNVLDRENLDEIKQEAAFMKKAQAVKGANYV HHHHHHHHHHHHCCCCEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE VTGDVTEFGRKEVGDQQLFGILGRGKSQIAYAKVNLNIVDTTTSEVVLSSQGAGEYSLSN EECCHHHHHHHHCCHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCEEEECCCCCCEECCC REIIGFGGTAGYDSTLNGKVLDLAIQDAVNHLVEQVDAGALASGK CEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 10710307 [H]