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The map label for this gene is rhaS [H]

Identifier: 237813626

GI number: 237813626

Start: 3280273

End: 3281340

Strand: Reverse

Name: rhaS [H]

Synonym: GBP346_A3402

Alternate gene names: 237813626

Gene position: 3281340-3280273 (Counterclockwise)

Preceding gene: 237813629

Following gene: 237813624

Centisome position: 80.06

GC content: 66.76

Gene sequence:

>1068_bases
ATGAGTGAAAGGGCCGGCGGCATGGAATGCGCGTTCAACATTGGTCGGATGGGAGCACACGTGAGTCGTGGTGCAGCTTT
CGGAGGCGTGTGCTACCGAAAAGGGATCGCTGTTGTCTTGTTTGGAGGCTTTTCGTTGATGCAGGCCGGGCGCATGGCGG
AGATCTTCAATCTCGCCAATCGCTTCCGACACGCGGGCGAGGATTCCGGCGGCTACGAAATGCTGCTGTTGTCGGCGACG
GGCGGCGCGGTGTATTCGTCGTCCGGCATTCCCGTCTGGACCCAGCCGCTGCACGAGCGTGCGATCGAGCGCGTGCATGC
GATCTTCGCGATCGGCGAACCGGACGCGGCCGATCGCGATGACGAGAAGGTGTCCGAATGGTTGCGCAGCGCCCGCGCGC
ATGTTCGCGCATCGGGTGGCGCGCGGCGCCTGATGGGGCTTGCCGCGCTCGAACGCGGCGATGCGGCGGCGGACGACCTG
TCGATCGACGCGATGCTCTCGGGCGCCGCATCCGCCGAGAAAGTGCGCCCGACAGCGGCGGAGCGCGCGGCGTTCTCGGC
CGCGCTCGCGATCATTCGGCACGATTGCGGCGATAGCGCCGCGCACGAGGTTGCCGAGCGCTTGTGCCCGGCGCTGAGCG
CACGGCCCGCCGAATCGGCTTTCGCCGCGCGCGAGGCGCGGGCGAGCAAGCTGATTCGCGCGTCGGTTCAGCAACTGCGC
GACAACAGCGCCAACCGCATTTCGATCGCCGATACCGCGCATGCGGCGGCGATGAGCGAGCGCAATTTCCTGCGCCGCTT
CAAGCAGGAAATCGGCGTGACGCCGTCCGAATTCGTGCAGAAAGTCCGGCTCGAGCATGCGTGCCACATGCTCGTGCATA
CCGATCTGCCGGTCGACAAGATCGCGCGGCGCACCGGCCTCGGCAGCGGCGACCGCCTCGCGAAGCTGTTCCGCCAGCAT
CTGTCGATGTCGCCGACCGAGTATCGCGCGATCGAGCGCAGCCGAGGCGCGGACGCGGATCTCGCGTGCGGCGATTTCGT
TTCGCGGCTGAGCGGATCGGTTTCATAA

Upstream 100 bases:

>100_bases
ATGTCCAGCTTCAATCCGCCAACATGGCGTCGTAATCGGACAGAAAGATTGTTGCAACGATTTGAAGGAATATGATGCGC
CGCAGAATAGACATTGCTGA

Downstream 100 bases:

>100_bases
CAGGCGGCGCGCCGCGTTCGTCGCTTCACTCCCCCACGTCCGTTTCGCCACGCTCGCGTGCGAAGCCGCGGGCGGCGTTC
GATCGTCGTTTCGGGAAGGC

Product: transcriptional regulator, AraC family

Products: NA

Alternate protein names: L-rhamnose operon regulatory protein rhaS [H]

Number of amino acids: Translated: 355; Mature: 354

Protein sequence:

>355_residues
MSERAGGMECAFNIGRMGAHVSRGAAFGGVCYRKGIAVVLFGGFSLMQAGRMAEIFNLANRFRHAGEDSGGYEMLLLSAT
GGAVYSSSGIPVWTQPLHERAIERVHAIFAIGEPDAADRDDEKVSEWLRSARAHVRASGGARRLMGLAALERGDAAADDL
SIDAMLSGAASAEKVRPTAAERAAFSAALAIIRHDCGDSAAHEVAERLCPALSARPAESAFAAREARASKLIRASVQQLR
DNSANRISIADTAHAAAMSERNFLRRFKQEIGVTPSEFVQKVRLEHACHMLVHTDLPVDKIARRTGLGSGDRLAKLFRQH
LSMSPTEYRAIERSRGADADLACGDFVSRLSGSVS

Sequences:

>Translated_355_residues
MSERAGGMECAFNIGRMGAHVSRGAAFGGVCYRKGIAVVLFGGFSLMQAGRMAEIFNLANRFRHAGEDSGGYEMLLLSAT
GGAVYSSSGIPVWTQPLHERAIERVHAIFAIGEPDAADRDDEKVSEWLRSARAHVRASGGARRLMGLAALERGDAAADDL
SIDAMLSGAASAEKVRPTAAERAAFSAALAIIRHDCGDSAAHEVAERLCPALSARPAESAFAAREARASKLIRASVQQLR
DNSANRISIADTAHAAAMSERNFLRRFKQEIGVTPSEFVQKVRLEHACHMLVHTDLPVDKIARRTGLGSGDRLAKLFRQH
LSMSPTEYRAIERSRGADADLACGDFVSRLSGSVS
>Mature_354_residues
SERAGGMECAFNIGRMGAHVSRGAAFGGVCYRKGIAVVLFGGFSLMQAGRMAEIFNLANRFRHAGEDSGGYEMLLLSATG
GAVYSSSGIPVWTQPLHERAIERVHAIFAIGEPDAADRDDEKVSEWLRSARAHVRASGGARRLMGLAALERGDAAADDLS
IDAMLSGAASAEKVRPTAAERAAFSAALAIIRHDCGDSAAHEVAERLCPALSARPAESAFAAREARASKLIRASVQQLRD
NSANRISIADTAHAAAMSERNFLRRFKQEIGVTPSEFVQKVRLEHACHMLVHTDLPVDKIARRTGLGSGDRLAKLFRQHL
SMSPTEYRAIERSRGADADLACGDFVSRLSGSVS

Specific function: Activates expression of the rhaBAD and rhaT operons [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 38017; Mature: 37886

Theoretical pI: Translated: 8.62; Mature: 8.62

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSERAGGMECAFNIGRMGAHVSRGAAFGGVCYRKGIAVVLFGGFSLMQAGRMAEIFNLAN
CCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEECCHHHHHHCHHHHHHHHHH
RFRHAGEDSGGYEMLLLSATGGAVYSSSGIPVWTQPLHERAIERVHAIFAIGEPDAADRD
HHHHCCCCCCCEEEEEEEECCCCEECCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCC
DEKVSEWLRSARAHVRASGGARRLMGLAALERGDAAADDLSIDAMLSGAASAEKVRPTAA
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHCCCHHH
ERAAFSAALAIIRHDCGDSAAHEVAERLCPALSARPAESAFAAREARASKLIRASVQQLR
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
DNSANRISIADTAHAAAMSERNFLRRFKQEIGVTPSEFVQKVRLEHACHMLVHTDLPVDK
CCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
IARRTGLGSGDRLAKLFRQHLSMSPTEYRAIERSRGADADLACGDFVSRLSGSVS
HHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
SERAGGMECAFNIGRMGAHVSRGAAFGGVCYRKGIAVVLFGGFSLMQAGRMAEIFNLAN
CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEECCHHHHHHCHHHHHHHHHH
RFRHAGEDSGGYEMLLLSATGGAVYSSSGIPVWTQPLHERAIERVHAIFAIGEPDAADRD
HHHHCCCCCCCEEEEEEEECCCCEECCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCC
DEKVSEWLRSARAHVRASGGARRLMGLAALERGDAAADDLSIDAMLSGAASAEKVRPTAA
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHCCCHHH
ERAAFSAALAIIRHDCGDSAAHEVAERLCPALSARPAESAFAAREARASKLIRASVQQLR
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
DNSANRISIADTAHAAAMSERNFLRRFKQEIGVTPSEFVQKVRLEHACHMLVHTDLPVDK
CCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
IARRTGLGSGDRLAKLFRQHLSMSPTEYRAIERSRGADADLACGDFVSRLSGSVS
HHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA