| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is 237813594
Identifier: 237813594
GI number: 237813594
Start: 3253936
End: 3254721
Strand: Reverse
Name: 237813594
Synonym: GBP346_A3370
Alternate gene names: NA
Gene position: 3254721-3253936 (Counterclockwise)
Preceding gene: 237813595
Following gene: 237813593
Centisome position: 79.41
GC content: 69.21
Gene sequence:
>786_bases ATGATGCGCACGACCCGTTGGCGCGCGCATACGCTGGTCGAGGTGATGATCGCGATGGCGCTCGGCTTGCTGATTTTGCT TGCCGCCATGTCGCTCTATCGCGTGCAGCGGGCTGCTTATTCAGCGGCGGTGGATGCCGCGCGCTTGCGCGACGCGGCGC AGGCGGCGCTCGCGCTGATCTCGCAGCAGATCCAGATGGCGGGCTTCGTGCCGCTCGATGCATACGATGCCCGCGCGGTG CCGGGGCTGTTCGGCTGTGCGGCGGGACGTCCGGTCGGCGCGGACGGTCAGACCGCATGCGATCCGCTCGCGAGCCGCTC CGACGGCCTCGTCGTCCGCTATGTCGGAGACGGCGTCTCCACATGGCCGACGGCGAGCGGGCAGCCGACGGACTGCCTCG GCCAGGGCGTCGGCGCGGCCGATACGCAGCCGCTGATCGTCAACCGCTTTTACGCGCGCGTCAGCGCGTCGACGGGCGAA CCGGAACTGTACTGCGAAGGCAGCGGCAGACCCGGCATCGCGCAGCCGCTTGTCGAAGGCGTCGAACGCTTGAGTTTGCG CTATCGACTATATGGTGCTGCACGATGGGCCGACGCGTCGGCCTTGTCTGTCGACGACTGGGCCAATGTGGCGGCCGTTT CCGTCTGCGTGCAAGTGCGAGGCAGGCGCACGGGGCGCCCGGCGCGGTATGTCGACTGCGAAGGGCGAGTGGCGAGCGCA CCCGACACCCGCGCGAGACTGGCGTGGCGGCGCTATGTGGCGGTCCGTAACCGAGCCGGCACATGA
Upstream 100 bases:
>100_bases GGTTGGCTGCAAGCCCTTTGCGTTGCGACGGCGATGCCGCTGCTGCGCGCGATGCCGCCAAGTCGTGCGTGACGCTCGCG TATGCATCGACGCAGCGCCG
Downstream 100 bases:
>100_bases TGCGCGTCATGGTCGGGGTGGATGTGGAGCGACTGCCGATGTTCCGGGCGCGCCCGACGCCGTGCGACGCGCCGCGACGG CGCGAGCCGCGGATGCGCGG
Product: prepilin-type N- cleavage/methylation domain protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 261; Mature: 261
Protein sequence:
>261_residues MMRTTRWRAHTLVEVMIAMALGLLILLAAMSLYRVQRAAYSAAVDAARLRDAAQAALALISQQIQMAGFVPLDAYDARAV PGLFGCAAGRPVGADGQTACDPLASRSDGLVVRYVGDGVSTWPTASGQPTDCLGQGVGAADTQPLIVNRFYARVSASTGE PELYCEGSGRPGIAQPLVEGVERLSLRYRLYGAARWADASALSVDDWANVAAVSVCVQVRGRRTGRPARYVDCEGRVASA PDTRARLAWRRYVAVRNRAGT
Sequences:
>Translated_261_residues MMRTTRWRAHTLVEVMIAMALGLLILLAAMSLYRVQRAAYSAAVDAARLRDAAQAALALISQQIQMAGFVPLDAYDARAV PGLFGCAAGRPVGADGQTACDPLASRSDGLVVRYVGDGVSTWPTASGQPTDCLGQGVGAADTQPLIVNRFYARVSASTGE PELYCEGSGRPGIAQPLVEGVERLSLRYRLYGAARWADASALSVDDWANVAAVSVCVQVRGRRTGRPARYVDCEGRVASA PDTRARLAWRRYVAVRNRAGT >Mature_261_residues MMRTTRWRAHTLVEVMIAMALGLLILLAAMSLYRVQRAAYSAAVDAARLRDAAQAALALISQQIQMAGFVPLDAYDARAV PGLFGCAAGRPVGADGQTACDPLASRSDGLVVRYVGDGVSTWPTASGQPTDCLGQGVGAADTQPLIVNRFYARVSASTGE PELYCEGSGRPGIAQPLVEGVERLSLRYRLYGAARWADASALSVDDWANVAAVSVCVQVRGRRTGRPARYVDCEGRVASA PDTRARLAWRRYVAVRNRAGT
Specific function: Unknown
COG id: COG4966
COG function: function code NU; Tfp pilus assembly protein PilW
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27816; Mature: 27816
Theoretical pI: Translated: 9.42; Mature: 9.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRTTRWRAHTLVEVMIAMALGLLILLAAMSLYRVQRAAYSAAVDAARLRDAAQAALALI CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SQQIQMAGFVPLDAYDARAVPGLFGCAAGRPVGADGQTACDPLASRSDGLVVRYVGDGVS HHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCCCC TWPTASGQPTDCLGQGVGAADTQPLIVNRFYARVSASTGEPELYCEGSGRPGIAQPLVEG CCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHH VERLSLRYRLYGAARWADASALSVDDWANVAAVSVCVQVRGRRTGRPARYVDCEGRVASA HHHHHHHHHEEEHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCC PDTRARLAWRRYVAVRNRAGT CCHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MMRTTRWRAHTLVEVMIAMALGLLILLAAMSLYRVQRAAYSAAVDAARLRDAAQAALALI CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SQQIQMAGFVPLDAYDARAVPGLFGCAAGRPVGADGQTACDPLASRSDGLVVRYVGDGVS HHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCCCC TWPTASGQPTDCLGQGVGAADTQPLIVNRFYARVSASTGEPELYCEGSGRPGIAQPLVEG CCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHH VERLSLRYRLYGAARWADASALSVDDWANVAAVSVCVQVRGRRTGRPARYVDCEGRVASA HHHHHHHHHEEEHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCC PDTRARLAWRRYVAVRNRAGT CCHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA