| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is 237813536
Identifier: 237813536
GI number: 237813536
Start: 3194943
End: 3196541
Strand: Reverse
Name: 237813536
Synonym: GBP346_A3312
Alternate gene names: NA
Gene position: 3196541-3194943 (Counterclockwise)
Preceding gene: 237813537
Following gene: 237813535
Centisome position: 77.99
GC content: 66.35
Gene sequence:
>1599_bases ATGCTTTGCATTCCTAATCTTCGCGCGACCGTGCTGTCATGCATGGTTGCCGTGATGCCGTTCGTCGCCGGCTGTGGCGG CGGGGACGATCCCGGCCCGATCCAGGTCGGGCAGTGCACGGGCGGCTCGTGCCCGCCGAGCGGGCCGAGCACGACGCCGC CGACGGTGACGAAGCTGTGCCCCGACGCGCTCGATTACTCGACGACGTACACGGGCGGCTCGGGCAGCGGCGAATACGTG AAGGTCAAGTTCGACACGGCGAAGAAGACTTACCAGATGCAGTTCATCGCATCGTCGGTGCCGACCTCGGCGGGGCAAAT CAACAACACGCGCGCGGGCCTCACGATCAGCGGCACGTTCCACAACGCGACCGGGCTGCCGACCGCCGAGCAGAATCGCT GCGCGTTCGTGCTCGACAACGGCGCGACGAGTGACGGCGCGTACTCGGTCACGATCAATCGCGCGGATCCGCCGATGCTG TTCGTCGGGATGGGTGTCGTGGGCGGCGGGATTCCGGGCGCGACGATCGCGTTTCCGGGGCTCGAACTGTTCCCGGGGTT CACGATCGGCACGGTGCCGTCGCGCTCGTTCGATTTCTATCCGTTCATCGGCTTTACGGATACCGAAACGGACTTCACGA AAGTGGCGGGCGTCTACAACGAAGTCGGCGTGCATCTGCAGCCGACGGGCACGTCGTTCCAGACGGCGGCGCCGCAGGGT TGGCAGCCGGATGTCGTGAACTGGACGCAGACGCTCAACGCGGACGGCTCATGCACGATCACGCCGGGCAGCGACTATTC GTGCCGCACGACGGGTACGCCGTGGACGCTGCGCAAGAATACCGACGGCACGTCCGACAACGTATTCGTGAGCCGGCCGC CGCCGAGCCAGCCGTATCCGTCCGCGGGGCAGGGCCAGCCGCTCGTGATCGTGACGCCGAGCCAGGCGCAGGGCGTGATG ATCGTCGGCAAGCTCAATGGCCAGCTCGTACCCGTCGTCATTCGCGTCGGCTACGCGAACGTCGATGCGGGCAATCCGCT CGCGTCGGTCGCGGACGCGGAAATCGGCATCTCGGTGCTCGCGCCCGCTGCGGCTGTCGCGGCAAACTCGCTGCAAGGCG GCTACATCGGCGCGACGAGCGCGGTCGCGTGCGGTGTCGTGAGCTTCGGCGGCTCCTCGAACGCACCCGCCAGCAGCGGC TCCGCCTTCGACAACACGGCGCCCCATCCCGAATTGCCGGGCACGTATCGCGGCGGTTTCTTCTATCCGTCCGCCGGCAA CTGCACGGACGGTTCGGCCGTGTCGACGCTCGCGGCGAACTACACGTCGACGCTGTTCCAGGGCGCGACCGCCGCGTTCC TGGATCCGATGACGTCGGCGGTGAGCGCGCAATTCTCGCTCGACTACACGCAGACGGCGCCCGGCAAGATCAAGGTGACG GCGACGCGCGACTTCAATGCGCAAGGCAGCGCGGGCACGGTCGCGGTCTTCAAGAAGGGCGATTACGGTTGGCTCATCAA GGTGGGCAACGTCTACGGCATGGTCGTCAACAACAGCCAGTACAACCCGTTCTTCACGGTCGGCGCTTTCGTTCAGTAA
Upstream 100 bases:
>100_bases CGAATTACCGCGTCGCCACCGGCGACACCGAAATACCAACCAGCCGGCGGGCGATCGCGCTGAGCCGGAAGAGACCGGAT TCGATCAAAAAGGAGGGGTG
Downstream 100 bases:
>100_bases CGCATGACTTCGCGGCGGCGCCGGACGCCGCCGCGGACTTCAAGATATCGAGGATTCCTATGTATTGGAGAAAATCGCTG GCTGCTGCCTTGTTGGCTCC
Product: hypothetical protein
Products: NA
Alternate protein names: Large Exoprotein Involved In Heme Utilization Or Adhesion
Number of amino acids: Translated: 532; Mature: 532
Protein sequence:
>532_residues MLCIPNLRATVLSCMVAVMPFVAGCGGGDDPGPIQVGQCTGGSCPPSGPSTTPPTVTKLCPDALDYSTTYTGGSGSGEYV KVKFDTAKKTYQMQFIASSVPTSAGQINNTRAGLTISGTFHNATGLPTAEQNRCAFVLDNGATSDGAYSVTINRADPPML FVGMGVVGGGIPGATIAFPGLELFPGFTIGTVPSRSFDFYPFIGFTDTETDFTKVAGVYNEVGVHLQPTGTSFQTAAPQG WQPDVVNWTQTLNADGSCTITPGSDYSCRTTGTPWTLRKNTDGTSDNVFVSRPPPSQPYPSAGQGQPLVIVTPSQAQGVM IVGKLNGQLVPVVIRVGYANVDAGNPLASVADAEIGISVLAPAAAVAANSLQGGYIGATSAVACGVVSFGGSSNAPASSG SAFDNTAPHPELPGTYRGGFFYPSAGNCTDGSAVSTLAANYTSTLFQGATAAFLDPMTSAVSAQFSLDYTQTAPGKIKVT ATRDFNAQGSAGTVAVFKKGDYGWLIKVGNVYGMVVNNSQYNPFFTVGAFVQ
Sequences:
>Translated_532_residues MLCIPNLRATVLSCMVAVMPFVAGCGGGDDPGPIQVGQCTGGSCPPSGPSTTPPTVTKLCPDALDYSTTYTGGSGSGEYV KVKFDTAKKTYQMQFIASSVPTSAGQINNTRAGLTISGTFHNATGLPTAEQNRCAFVLDNGATSDGAYSVTINRADPPML FVGMGVVGGGIPGATIAFPGLELFPGFTIGTVPSRSFDFYPFIGFTDTETDFTKVAGVYNEVGVHLQPTGTSFQTAAPQG WQPDVVNWTQTLNADGSCTITPGSDYSCRTTGTPWTLRKNTDGTSDNVFVSRPPPSQPYPSAGQGQPLVIVTPSQAQGVM IVGKLNGQLVPVVIRVGYANVDAGNPLASVADAEIGISVLAPAAAVAANSLQGGYIGATSAVACGVVSFGGSSNAPASSG SAFDNTAPHPELPGTYRGGFFYPSAGNCTDGSAVSTLAANYTSTLFQGATAAFLDPMTSAVSAQFSLDYTQTAPGKIKVT ATRDFNAQGSAGTVAVFKKGDYGWLIKVGNVYGMVVNNSQYNPFFTVGAFVQ >Mature_532_residues MLCIPNLRATVLSCMVAVMPFVAGCGGGDDPGPIQVGQCTGGSCPPSGPSTTPPTVTKLCPDALDYSTTYTGGSGSGEYV KVKFDTAKKTYQMQFIASSVPTSAGQINNTRAGLTISGTFHNATGLPTAEQNRCAFVLDNGATSDGAYSVTINRADPPML FVGMGVVGGGIPGATIAFPGLELFPGFTIGTVPSRSFDFYPFIGFTDTETDFTKVAGVYNEVGVHLQPTGTSFQTAAPQG WQPDVVNWTQTLNADGSCTITPGSDYSCRTTGTPWTLRKNTDGTSDNVFVSRPPPSQPYPSAGQGQPLVIVTPSQAQGVM IVGKLNGQLVPVVIRVGYANVDAGNPLASVADAEIGISVLAPAAAVAANSLQGGYIGATSAVACGVVSFGGSSNAPASSG SAFDNTAPHPELPGTYRGGFFYPSAGNCTDGSAVSTLAANYTSTLFQGATAAFLDPMTSAVSAQFSLDYTQTAPGKIKVT ATRDFNAQGSAGTVAVFKKGDYGWLIKVGNVYGMVVNNSQYNPFFTVGAFVQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54534; Mature: 54534
Theoretical pI: Translated: 4.78; Mature: 4.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLCIPNLRATVLSCMVAVMPFVAGCGGGDDPGPIQVGQCTGGSCPPSGPSTTPPTVTKLC CEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHC PDALDYSTTYTGGSGSGEYVKVKFDTAKKTYQMQFIASSVPTSAGQINNTRAGLTISGTF CHHHCCCEEECCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEE HNATGLPTAEQNRCAFVLDNGATSDGAYSVTINRADPPMLFVGMGVVGGGIPGATIAFPG ECCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCEEEEECCHHCCCCCCCEEECCC LELFPGFTIGTVPSRSFDFYPFIGFTDTETDFTKVAGVYNEVGVHLQPTGTSFQTAAPQG HHHCCCCEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCCCCC WQPDVVNWTQTLNADGSCTITPGSDYSCRTTGTPWTLRKNTDGTSDNVFVSRPPPSQPYP CCCCCCCHHHEECCCCCEEECCCCCCCEEECCCCEEEECCCCCCCCCEEEECCCCCCCCC SAGQGQPLVIVTPSQAQGVMIVGKLNGQLVPVVIRVGYANVDAGNPLASVADAEIGISVL CCCCCCEEEEECCCCCCCEEEEEECCCCEEEEEEEEEEEECCCCCCHHHHCCCCCCEEEC APAAAVAANSLQGGYIGATSAVACGVVSFGGSSNAPASSGSAFDNTAPHPELPGTYRGGF CCHHHHHHCCCCCCEEECHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE FYPSAGNCTDGSAVSTLAANYTSTLFQGATAAFLDPMTSAVSAQFSLDYTQTAPGKIKVT EECCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEEEEEEECCCCCCEEEEE ATRDFNAQGSAGTVAVFKKGDYGWLIKVGNVYGMVVNNSQYNPFFTVGAFVQ EEECCCCCCCCCEEEEEEECCCEEEEEECCEEEEEEECCCCCCEEEECEECC >Mature Secondary Structure MLCIPNLRATVLSCMVAVMPFVAGCGGGDDPGPIQVGQCTGGSCPPSGPSTTPPTVTKLC CEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHC PDALDYSTTYTGGSGSGEYVKVKFDTAKKTYQMQFIASSVPTSAGQINNTRAGLTISGTF CHHHCCCEEECCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEE HNATGLPTAEQNRCAFVLDNGATSDGAYSVTINRADPPMLFVGMGVVGGGIPGATIAFPG ECCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCEEEEECCHHCCCCCCCEEECCC LELFPGFTIGTVPSRSFDFYPFIGFTDTETDFTKVAGVYNEVGVHLQPTGTSFQTAAPQG HHHCCCCEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCCCCC WQPDVVNWTQTLNADGSCTITPGSDYSCRTTGTPWTLRKNTDGTSDNVFVSRPPPSQPYP CCCCCCCHHHEECCCCCEEECCCCCCCEEECCCCEEEECCCCCCCCCEEEECCCCCCCCC SAGQGQPLVIVTPSQAQGVMIVGKLNGQLVPVVIRVGYANVDAGNPLASVADAEIGISVL CCCCCCEEEEECCCCCCCEEEEEECCCCEEEEEEEEEEEECCCCCCHHHHCCCCCCEEEC APAAAVAANSLQGGYIGATSAVACGVVSFGGSSNAPASSGSAFDNTAPHPELPGTYRGGF CCHHHHHHCCCCCCEEECHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE FYPSAGNCTDGSAVSTLAANYTSTLFQGATAAFLDPMTSAVSAQFSLDYTQTAPGKIKVT EECCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEEEEEEECCCCCCEEEEE ATRDFNAQGSAGTVAVFKKGDYGWLIKVGNVYGMVVNNSQYNPFFTVGAFVQ EEECCCCCCCCCEEEEEEECCCEEEEEECCEEEEEEECCCCCCEEEECEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA