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The map label for this gene is ubiD [H]

Identifier: 237813437

GI number: 237813437

Start: 3106399

End: 3107958

Strand: Direct

Name: ubiD [H]

Synonym: GBP346_A3212

Alternate gene names: 237813437

Gene position: 3106399-3107958 (Clockwise)

Preceding gene: 237813435

Following gene: 237813438

Centisome position: 75.79

GC content: 68.27

Gene sequence:

>1560_bases
ATGAAATACAAAGATTTACGCGATTTCATCCATGGCCTCGAGCAGCGCGGCGAGTTGCGGCGCGTCACCCAGCCCGTATC
GCCCGTCCTCGAAATGACCGAACTCTGCGACCGCGTGCTGCGCGCGGGCGGCCCCGCGCTCCTGTTCGACGCGCCGGCCG
GCCACCGGTTTCCGGTGCTCGGCAATCTGTTCGGCACGCCGCGGCGCGTCGCGCTCGGCATGGGCGTCGACGCCGACGAC
GAAGCGGCGCTCGCGTCGCTGCGCGACATCGGCCGCCTGCTGTCCGCGCTCAAGGAGCCGGACCCGCCGAAGCGCCTGAA
AGACGCGGGCAAGTTGCTGTCGCTCGCGAAGGCCGTGTGGGACATGAGCCCGAAGACGGTCTCCGCGCCGCCGTGCCAGG
AGATCGTCTGGGAAGGCGACGACGTCGATCTGCACAAGCTGCCGATCCAGACCTGCTGGCCGGGCGACGCCGGGCCGCTG
CTCACGTGGGGCCTGACCGTCACGCGCGGGCCGAACAAGACGCGCCAGAATCTGGGCATCTACCGGCAGCAACTGATCGG
ACGCAACAAACTGATCATGCGCTGGCTCGCGCATCGCGGCGGCGCGCTCGATTTCCGCGAATTCGCGCTGAAGCATCCGG
GCCAGCCCTATCCCGTCGCCGTCGTGCTCGGCGCCGATCCGGCGACGATGCTCGGGGCCGTCACGCCCGTGCCCGATTCG
CTGTCCGAATACCAGTTCGCGGGCCTGCTGCGCGGCGCGCGCACCGAGCTCGCGAAATGCGTGACGCCCGGCGTCGACGC
GCTGCAGGTGCCGGCGCGCGCGGAAATCGTGCTCGAAGGCTTCATCCACCCGCAGCAAGGCGCGCCCGCGCCTGCGCCCG
AAGGCGCGCCGCCGCGGCCGGCCGCGGGCGCGGCGGCCGGCTACGAGCATGCGCTCGAGGGCCCGTACGGCGATCACACC
GGCTACTACAACGAGCAGGAATGGTTTCCGGTCTTCACGGTCGAGCGGATCACGATGCGCCGCGACGCGATCTACCACTC
GACGTACACCGGCAAGCCGCCCGACGAGCCGGCCGTGCTCGGCGTCGCGCTGAACGAAGTGTTCGTGCCGCTGCTGCAGA
AGCAGTTCGCCGAGATCACCGATTTCTATCTGCCGCCCGAGGGTTGCAGCTACCGGATGGCGATCGTCCAGATGAAGAAG
AGTTACGCGGGACACGCGAAGCGGGTGATGTTCGGCGTCTGGAGCTTCCTGCGGCAGTTCATGTATACGAAGTTCATCGT
GGTCGTCGACGAGGACGTGAACGTGCGCGACTGGAAGGAAGTGATCTGGGCGATCACGACGCGCGTCGATCCGGCGCGCG
ACACGGTGCTCGTCGAGAACACGCCGATCGACTATCTCGACTTCGCGTCGCCCGTCGCCGGCCTCGGCTCGAAGATGGGG
CTCGATGCGACCAACAAGTGGCCGGGCGAAACCCAGCGCGAATGGGGCCGGCCGATCGAGATGGACGCCGCCGTGAAGGC
GCGCGTCGATCGTCTGTGGACGGAGATCGGCCTGTCGTGA

Upstream 100 bases:

>100_bases
CGCCTGGCCGTGCGGCCGGGTAAAATCGGCGCTCGTTTTCGGGCGGGCTCGTGCCCGCCCTCATCGCCGCCGCCTGTCGC
GCGCGGCCCGGACATTCTTC

Downstream 100 bases:

>100_bases
ACGCCTGCCCATCGAGCCACCCCGACAACCGCCACACGTGATGAGCTTCGCCCCTACGTCGATGCTGTCCGACGGCTTTT
TCCTGTCGCTTTCGCTGTGC

Product: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

Products: 2-octaprenylphenol; CO2 [C]

Alternate protein names: Polyprenyl p-hydroxybenzoate decarboxylase [H]

Number of amino acids: Translated: 519; Mature: 519

Protein sequence:

>519_residues
MKYKDLRDFIHGLEQRGELRRVTQPVSPVLEMTELCDRVLRAGGPALLFDAPAGHRFPVLGNLFGTPRRVALGMGVDADD
EAALASLRDIGRLLSALKEPDPPKRLKDAGKLLSLAKAVWDMSPKTVSAPPCQEIVWEGDDVDLHKLPIQTCWPGDAGPL
LTWGLTVTRGPNKTRQNLGIYRQQLIGRNKLIMRWLAHRGGALDFREFALKHPGQPYPVAVVLGADPATMLGAVTPVPDS
LSEYQFAGLLRGARTELAKCVTPGVDALQVPARAEIVLEGFIHPQQGAPAPAPEGAPPRPAAGAAAGYEHALEGPYGDHT
GYYNEQEWFPVFTVERITMRRDAIYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQFAEITDFYLPPEGCSYRMAIVQMKK
SYAGHAKRVMFGVWSFLRQFMYTKFIVVVDEDVNVRDWKEVIWAITTRVDPARDTVLVENTPIDYLDFASPVAGLGSKMG
LDATNKWPGETQREWGRPIEMDAAVKARVDRLWTEIGLS

Sequences:

>Translated_519_residues
MKYKDLRDFIHGLEQRGELRRVTQPVSPVLEMTELCDRVLRAGGPALLFDAPAGHRFPVLGNLFGTPRRVALGMGVDADD
EAALASLRDIGRLLSALKEPDPPKRLKDAGKLLSLAKAVWDMSPKTVSAPPCQEIVWEGDDVDLHKLPIQTCWPGDAGPL
LTWGLTVTRGPNKTRQNLGIYRQQLIGRNKLIMRWLAHRGGALDFREFALKHPGQPYPVAVVLGADPATMLGAVTPVPDS
LSEYQFAGLLRGARTELAKCVTPGVDALQVPARAEIVLEGFIHPQQGAPAPAPEGAPPRPAAGAAAGYEHALEGPYGDHT
GYYNEQEWFPVFTVERITMRRDAIYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQFAEITDFYLPPEGCSYRMAIVQMKK
SYAGHAKRVMFGVWSFLRQFMYTKFIVVVDEDVNVRDWKEVIWAITTRVDPARDTVLVENTPIDYLDFASPVAGLGSKMG
LDATNKWPGETQREWGRPIEMDAAVKARVDRLWTEIGLS
>Mature_519_residues
MKYKDLRDFIHGLEQRGELRRVTQPVSPVLEMTELCDRVLRAGGPALLFDAPAGHRFPVLGNLFGTPRRVALGMGVDADD
EAALASLRDIGRLLSALKEPDPPKRLKDAGKLLSLAKAVWDMSPKTVSAPPCQEIVWEGDDVDLHKLPIQTCWPGDAGPL
LTWGLTVTRGPNKTRQNLGIYRQQLIGRNKLIMRWLAHRGGALDFREFALKHPGQPYPVAVVLGADPATMLGAVTPVPDS
LSEYQFAGLLRGARTELAKCVTPGVDALQVPARAEIVLEGFIHPQQGAPAPAPEGAPPRPAAGAAAGYEHALEGPYGDHT
GYYNEQEWFPVFTVERITMRRDAIYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQFAEITDFYLPPEGCSYRMAIVQMKK
SYAGHAKRVMFGVWSFLRQFMYTKFIVVVDEDVNVRDWKEVIWAITTRVDPARDTVLVENTPIDYLDFASPVAGLGSKMG
LDATNKWPGETQREWGRPIEMDAAVKARVDRLWTEIGLS

Specific function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol [H]

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=518, Percent_Identity=67.3745173745174, Blast_Score=719, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6320748, Length=472, Percent_Identity=23.3050847457627, Blast_Score=101, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: NA

Molecular weight: Translated: 57360; Mature: 57360

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS00024 HEMOPEXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYKDLRDFIHGLEQRGELRRVTQPVSPVLEMTELCDRVLRAGGPALLFDAPAGHRFPVL
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCH
GNLFGTPRRVALGMGVDADDEAALASLRDIGRLLSALKEPDPPKRLKDAGKLLSLAKAVW
HCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
DMSPKTVSAPPCQEIVWEGDDVDLHKLPIQTCWPGDAGPLLTWGLTVTRGPNKTRQNLGI
CCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCEEEECEEEECCCCHHHHHHHH
YRQQLIGRNKLIMRWLAHRGGALDFREFALKHPGQPYPVAVVLGADPATMLGAVTPVPDS
HHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEECCCCHHHHHCCCCCCCC
LSEYQFAGLLRGARTELAKCVTPGVDALQVPARAEIVLEGFIHPQQGAPAPAPEGAPPRP
HHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCHHHHHHEECCCCCCCCCCCCCCCCCCCC
AAGAAAGYEHALEGPYGDHTGYYNEQEWFPVFTVERITMRRDAIYHSTYTGKPPDEPAVL
CCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCCCEE
GVALNEVFVPLLQKQFAEITDFYLPPEGCSYRMAIVQMKKSYAGHAKRVMFGVWSFLRQF
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
MYTKFIVVVDEDVNVRDWKEVIWAITTRVDPARDTVLVENTPIDYLDFASPVAGLGSKMG
HHHEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCC
LDATNKWPGETQREWGRPIEMDAAVKARVDRLWTEIGLS
CCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKYKDLRDFIHGLEQRGELRRVTQPVSPVLEMTELCDRVLRAGGPALLFDAPAGHRFPVL
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCH
GNLFGTPRRVALGMGVDADDEAALASLRDIGRLLSALKEPDPPKRLKDAGKLLSLAKAVW
HCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
DMSPKTVSAPPCQEIVWEGDDVDLHKLPIQTCWPGDAGPLLTWGLTVTRGPNKTRQNLGI
CCCCCCCCCCCHHHHHCCCCCCCCEECCCCCCCCCCCCCEEEECEEEECCCCHHHHHHHH
YRQQLIGRNKLIMRWLAHRGGALDFREFALKHPGQPYPVAVVLGADPATMLGAVTPVPDS
HHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEECCCCHHHHHCCCCCCCC
LSEYQFAGLLRGARTELAKCVTPGVDALQVPARAEIVLEGFIHPQQGAPAPAPEGAPPRP
HHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCHHHHHHEECCCCCCCCCCCCCCCCCCCC
AAGAAAGYEHALEGPYGDHTGYYNEQEWFPVFTVERITMRRDAIYHSTYTGKPPDEPAVL
CCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCCCEE
GVALNEVFVPLLQKQFAEITDFYLPPEGCSYRMAIVQMKKSYAGHAKRVMFGVWSFLRQF
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
MYTKFIVVVDEDVNVRDWKEVIWAITTRVDPARDTVLVENTPIDYLDFASPVAGLGSKMG
HHHEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCC
LDATNKWPGETQREWGRPIEMDAAVKARVDRLWTEIGLS
CCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: 3-octaprenyl-4-hydroxybenzoate [C]

Specific reaction: 3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA