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The map label for this gene is yecS [H]

Identifier: 237813419

GI number: 237813419

Start: 3091116

End: 3091775

Strand: Direct

Name: yecS [H]

Synonym: GBP346_A3194

Alternate gene names: 237813419

Gene position: 3091116-3091775 (Clockwise)

Preceding gene: 237813418

Following gene: 237813420

Centisome position: 75.42

GC content: 68.64

Gene sequence:

>660_bases
ATGCAAGCGTTCGATCTGGTCGTGCATACCCTCCCCGTCCTCGCGAAAGGCGCGGTCCTCACGATGAAGTTCGCGGTCGC
GTCGATGGTGCTCGGATTGATCGTCGGCCTGCTCGTCGCGCTCGTGCGGATCGGCAGCAACCGGCTGCTGTCCGCGATCG
CGCAGGGCTACGTGAGCCTGATGCGCGGCACGCCGCTGCTCGTGCAGATGTTCGTCGTCTACTACGGGTTGCCCGACATC
GGCATCTCGCTCGACCCGACGGCGGCCGGCATCTTCACGCTCACGCTCAACGCGGGCGCGTACCTGTCCGAGAGCATGCG
CGGCGCGATCCTCGGCATCGGCCGCGGCCAGTGGGCCGCGTCGCACAGCCTCGGCCTCACGCACGTGCAGACGCTGCGCC
ACGTGATCTGCCCGCAGGCGCTGCGCCTCGCGGTGCCGAGCCTCGGCAACACGCTGATCAGCCTCATCAAGGACACGTCG
CTCGTGTCCGTCATCACCGTCACGGAGCTGCTGCGCTCGACGCAGGAAGTGATCGCGTCGACGTTCCAGCCGCTGCCGCT
GTATCTGGCCGCCGCCGCGATCTACTGGGTGCTGAGCACGCTGCTCGCGCGGCTGCAGGGCCGCATCGAAACGCGCTGCG
CGCTGCCGTCCGCGCACTGA

Upstream 100 bases:

>100_bases
CCGAGCGCGCAGTAACCGGGCGAACCCCGCCGCCCGCTCCCGCGCGCGGCGGCGCGCATGCCGCCGCCGGCGCGCGCCCC
AACGATCTGGAGACAAGTTC

Downstream 100 bases:

>100_bases
GCGCGCGCGGCGACCGCCCCCGACAACCCTCACGAAAGCTCCCGACATGATCACGCTCGACAACGTATCGAAGTGGTATG
GCTCGCATCAGGTCCTCGCC

Product: amino acid ABC transporter, His/Glu/Gln/Arg/opine family, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MQAFDLVVHTLPVLAKGAVLTMKFAVASMVLGLIVGLLVALVRIGSNRLLSAIAQGYVSLMRGTPLLVQMFVVYYGLPDI
GISLDPTAAGIFTLTLNAGAYLSESMRGAILGIGRGQWAASHSLGLTHVQTLRHVICPQALRLAVPSLGNTLISLIKDTS
LVSVITVTELLRSTQEVIASTFQPLPLYLAAAAIYWVLSTLLARLQGRIETRCALPSAH

Sequences:

>Translated_219_residues
MQAFDLVVHTLPVLAKGAVLTMKFAVASMVLGLIVGLLVALVRIGSNRLLSAIAQGYVSLMRGTPLLVQMFVVYYGLPDI
GISLDPTAAGIFTLTLNAGAYLSESMRGAILGIGRGQWAASHSLGLTHVQTLRHVICPQALRLAVPSLGNTLISLIKDTS
LVSVITVTELLRSTQEVIASTFQPLPLYLAAAAIYWVLSTLLARLQGRIETRCALPSAH
>Mature_219_residues
MQAFDLVVHTLPVLAKGAVLTMKFAVASMVLGLIVGLLVALVRIGSNRLLSAIAQGYVSLMRGTPLLVQMFVVYYGLPDI
GISLDPTAAGIFTLTLNAGAYLSESMRGAILGIGRGQWAASHSLGLTHVQTLRHVICPQALRLAVPSLGNTLISLIKDTS
LVSVITVTELLRSTQEVIASTFQPLPLYLAAAAIYWVLSTLLARLQGRIETRCALPSAH

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=211, Percent_Identity=43.6018957345972, Blast_Score=197, Evalue=4e-52,
Organism=Escherichia coli, GI1787030, Length=207, Percent_Identity=38.1642512077295, Blast_Score=144, Evalue=4e-36,
Organism=Escherichia coli, GI1788646, Length=200, Percent_Identity=35, Blast_Score=130, Evalue=8e-32,
Organism=Escherichia coli, GI1787087, Length=223, Percent_Identity=30.4932735426009, Blast_Score=106, Evalue=9e-25,
Organism=Escherichia coli, GI1788645, Length=206, Percent_Identity=31.0679611650485, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1786873, Length=224, Percent_Identity=30.8035714285714, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1787086, Length=212, Percent_Identity=31.1320754716981, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI87082239, Length=205, Percent_Identity=33.1707317073171, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1786874, Length=167, Percent_Identity=30.5389221556886, Blast_Score=85, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23271; Mature: 23271

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAFDLVVHTLPVLAKGAVLTMKFAVASMVLGLIVGLLVALVRIGSNRLLSAIAQGYVSL
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
MRGTPLLVQMFVVYYGLPDIGISLDPTAAGIFTLTLNAGAYLSESMRGAILGIGRGQWAA
HCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHCHHEEECCCCCCHH
SHSLGLTHVQTLRHVICPQALRLAVPSLGNTLISLIKDTSLVSVITVTELLRSTQEVIAS
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFQPLPLYLAAAAIYWVLSTLLARLQGRIETRCALPSAH
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MQAFDLVVHTLPVLAKGAVLTMKFAVASMVLGLIVGLLVALVRIGSNRLLSAIAQGYVSL
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
MRGTPLLVQMFVVYYGLPDIGISLDPTAAGIFTLTLNAGAYLSESMRGAILGIGRGQWAA
HCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHCHHEEECCCCCCHH
SHSLGLTHVQTLRHVICPQALRLAVPSLGNTLISLIKDTSLVSVITVTELLRSTQEVIAS
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFQPLPLYLAAAAIYWVLSTLLARLQGRIETRCALPSAH
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]