| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is yhjE [H]
Identifier: 237813391
GI number: 237813391
Start: 3061841
End: 3063154
Strand: Direct
Name: yhjE [H]
Synonym: GBP346_A3165
Alternate gene names: 237813391
Gene position: 3061841-3063154 (Clockwise)
Preceding gene: 237813389
Following gene: 237813392
Centisome position: 74.7
GC content: 69.56
Gene sequence:
>1314_bases ATGTCGGACACCCGTCTTTCCGCTTCCGCCGCCGCGCCGCGCGCCGCGAACACGACGAACCACCGTCGCATCGTGTTCGC GAGCTTCATCGGCACGGCGATCGAGTTCTACGATTTCTACGTGTACGCGACAGCCGCCGCGCTCGTGATCGGCCCCGTGT TCTTCCCGCACGGCTCGGCCACCGCGCAGGCGCTGTCCGCGTTCGTCACGTTCGGCATCGCGTTCATCGCGCGGCCGATC GGCTCGTTCCTGTTCGGCCACTTCGGCGACCGGATCGGCCGCAAGTCGACGCTCGTCGCGTCACTGCTCGTGATGGGCGT GTCGACGACCGCGATCGGCTTCGTGCCCGGCTACGACGCGATCGGCGCGCTCGCGCCCGTGCTGCTCTGCGTGCTGCGGT TCGGCCAGGGCATCGGCCTCGGCGGCGAATGGGGCGGCGCCGCGCTCCTCGCCACCGAGCACGCGCCCGCCGGCAAGCGC GGCTGGTTCGGGATGTTTCCGCAGCTCGGCCCGTCGATCGGCTTTCTCGCGTCGAACGGCCTGTTCTTCGCGCTTGCGCT CACGCTGTCCGACGAGCAGTTTCGTTCGTGGGGCTGGCGCATCCCGTTTCTCGTGAGCGCGGCGCTCGTCGCGGTCGGCC TCTACGTACGCCTGAAGATCGCCGAAACGCCCGCGTTCCAGGCCGCGCTCGACCGGCACGAGCGCGTGCGCGTACCGCTC GCGGCGCTCGTTGCGCACCACTGGCGGCCGACGCTGCTCGGCGCGCTCGCGATGGTCGTCTGCTATACGCTGTTCTATAT CTCGACGGTGTTCTCGCTGTCGTACGGCGTCTCGACGCTGCATTTCTCGCGCCAGAGCTTCCTCGGCCTGCTGTGTTTCG CGGTGCTGTTCATGGCGCTCGCGACGCCGCTCGCCGCCGCGGCCGCCGATCGCTTCGGTCGCAAGCCGGTGCTGATCGCG GGCGCGATCGCCGCGCTGCTGTCCGGCTTCACGATGGCGCCGCTGCTCGGCAGCGGCTCGATGCCGCTCGTCGCGCTGTT CCTGACGATCGAGCTGTTCCTGATGGGCATGACGTTCGCGCCGATGGGCGCGCTGCTGCCGGAACTGTTCCCGACCAACG TGCGCTACACGGGCGCGGGGGTCGCGTACAACCTGGGCGGCATCCTGGGCGCGTCGATCGCGCCTTACATCGCGCAGTTG CTTGCCGCGCGCGGCGGACTTGCGTGGGTCGGCGCATACGTGTCGGCCGCGGCGGCGATCAGCCTCGTCGGCGTGCTGCT GATGCGCGAAACGCGCGATGCGAAGCTGACATAA
Upstream 100 bases:
>100_bases CCCGACTCTCGATTCGAACAAAGGCGCAACGGCCGCCGAGCGCGCGCGACAAGCGACGCGCGCTCGAGCGGACGCCGTGC CGCCACAACCGGAGCCCCCC
Downstream 100 bases:
>100_bases GCCGCACCGGCGCCCCCGCCGCTCGAGCCAGCGGACGGCGGCTCGCCGGCGCGCGCGGAACGAGCGGCGACCGGCAACGT TTTCGGCACGCACCGCCCTG
Product: MFS transporter, metabolite:H+ symporter (MHS) family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 437; Mature: 436
Protein sequence:
>437_residues MSDTRLSASAAAPRAANTTNHRRIVFASFIGTAIEFYDFYVYATAAALVIGPVFFPHGSATAQALSAFVTFGIAFIARPI GSFLFGHFGDRIGRKSTLVASLLVMGVSTTAIGFVPGYDAIGALAPVLLCVLRFGQGIGLGGEWGGAALLATEHAPAGKR GWFGMFPQLGPSIGFLASNGLFFALALTLSDEQFRSWGWRIPFLVSAALVAVGLYVRLKIAETPAFQAALDRHERVRVPL AALVAHHWRPTLLGALAMVVCYTLFYISTVFSLSYGVSTLHFSRQSFLGLLCFAVLFMALATPLAAAAADRFGRKPVLIA GAIAALLSGFTMAPLLGSGSMPLVALFLTIELFLMGMTFAPMGALLPELFPTNVRYTGAGVAYNLGGILGASIAPYIAQL LAARGGLAWVGAYVSAAAAISLVGVLLMRETRDAKLT
Sequences:
>Translated_437_residues MSDTRLSASAAAPRAANTTNHRRIVFASFIGTAIEFYDFYVYATAAALVIGPVFFPHGSATAQALSAFVTFGIAFIARPI GSFLFGHFGDRIGRKSTLVASLLVMGVSTTAIGFVPGYDAIGALAPVLLCVLRFGQGIGLGGEWGGAALLATEHAPAGKR GWFGMFPQLGPSIGFLASNGLFFALALTLSDEQFRSWGWRIPFLVSAALVAVGLYVRLKIAETPAFQAALDRHERVRVPL AALVAHHWRPTLLGALAMVVCYTLFYISTVFSLSYGVSTLHFSRQSFLGLLCFAVLFMALATPLAAAAADRFGRKPVLIA GAIAALLSGFTMAPLLGSGSMPLVALFLTIELFLMGMTFAPMGALLPELFPTNVRYTGAGVAYNLGGILGASIAPYIAQL LAARGGLAWVGAYVSAAAAISLVGVLLMRETRDAKLT >Mature_436_residues SDTRLSASAAAPRAANTTNHRRIVFASFIGTAIEFYDFYVYATAAALVIGPVFFPHGSATAQALSAFVTFGIAFIARPIG SFLFGHFGDRIGRKSTLVASLLVMGVSTTAIGFVPGYDAIGALAPVLLCVLRFGQGIGLGGEWGGAALLATEHAPAGKRG WFGMFPQLGPSIGFLASNGLFFALALTLSDEQFRSWGWRIPFLVSAALVAVGLYVRLKIAETPAFQAALDRHERVRVPLA ALVAHHWRPTLLGALAMVVCYTLFYISTVFSLSYGVSTLHFSRQSFLGLLCFAVLFMALATPLAAAAADRFGRKPVLIAG AIAALLSGFTMAPLLGSGSMPLVALFLTIELFLMGMTFAPMGALLPELFPTNVRYTGAGVAYNLGGILGASIAPYIAQLL AARGGLAWVGAYVSAAAAISLVGVLLMRETRDAKLT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]
Homologues:
Organism=Escherichia coli, GI1789941, Length=423, Percent_Identity=53.4278959810875, Blast_Score=382, Evalue=1e-107, Organism=Escherichia coli, GI1788292, Length=438, Percent_Identity=35.8447488584475, Blast_Score=257, Evalue=1e-69, Organism=Escherichia coli, GI1790550, Length=427, Percent_Identity=30.6791569086651, Blast_Score=228, Evalue=5e-61, Organism=Escherichia coli, GI1788942, Length=442, Percent_Identity=30.7692307692308, Blast_Score=161, Evalue=9e-41, Organism=Escherichia coli, GI87082404, Length=406, Percent_Identity=23.3990147783251, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI87082231, Length=438, Percent_Identity=23.2876712328767, Blast_Score=71, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004736 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR005828 - InterPro: IPR005829 [H]
Pfam domain/function: PF07690 MFS_1; PF00083 Sugar_tr [H]
EC number: NA
Molecular weight: Translated: 45928; Mature: 45796
Theoretical pI: Translated: 10.12; Mature: 10.12
Prosite motif: PS50850 MFS ; PS00216 SUGAR_TRANSPORT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDTRLSASAAAPRAANTTNHRRIVFASFIGTAIEFYDFYVYATAAALVIGPVFFPHGSA CCCCCCCCHHCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH TAQALSAFVTFGIAFIARPIGSFLFGHFGDRIGRKSTLVASLLVMGVSTTAIGFVPGYDA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEECCCCHHH IGALAPVLLCVLRFGQGIGLGGEWGGAALLATEHAPAGKRGWFGMFPQLGPSIGFLASNG HHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHCCCCCCHHCCCC LFFALALTLSDEQFRSWGWRIPFLVSAALVAVGLYVRLKIAETPAFQAALDRHERVRVPL EEEEEEEEECHHHHHHCCCCHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHH AALVAHHWRPTLLGALAMVVCYTLFYISTVFSLSYGVSTLHFSRQSFLGLLCFAVLFMAL HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH ATPLAAAAADRFGRKPVLIAGAIAALLSGFTMAPLLGSGSMPLVALFLTIELFLMGMTFA HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH PMGALLPELFPTNVRYTGAGVAYNLGGILGASIAPYIAQLLAARGGLAWVGAYVSAAAAI HHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH SLVGVLLMRETRDAKLT HHHHHHHHHCCCCCCCC >Mature Secondary Structure SDTRLSASAAAPRAANTTNHRRIVFASFIGTAIEFYDFYVYATAAALVIGPVFFPHGSA CCCCCCCHHCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH TAQALSAFVTFGIAFIARPIGSFLFGHFGDRIGRKSTLVASLLVMGVSTTAIGFVPGYDA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEECCCCHHH IGALAPVLLCVLRFGQGIGLGGEWGGAALLATEHAPAGKRGWFGMFPQLGPSIGFLASNG HHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHCCCCCCHHCCCC LFFALALTLSDEQFRSWGWRIPFLVSAALVAVGLYVRLKIAETPAFQAALDRHERVRVPL EEEEEEEEECHHHHHHCCCCHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHH AALVAHHWRPTLLGALAMVVCYTLFYISTVFSLSYGVSTLHFSRQSFLGLLCFAVLFMAL HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH ATPLAAAAADRFGRKPVLIAGAIAALLSGFTMAPLLGSGSMPLVALFLTIELFLMGMTFA HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH PMGALLPELFPTNVRYTGAGVAYNLGGILGASIAPYIAQLLAARGGLAWVGAYVSAAAAI HHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH SLVGVLLMRETRDAKLT HHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]