Click here to switch to the map view.

The map label for this gene is ydfF [H]

Identifier: 237813244

GI number: 237813244

Start: 2927667

End: 2928377

Strand: Direct

Name: ydfF [H]

Synonym: GBP346_A3011

Alternate gene names: 237813244

Gene position: 2927667-2928377 (Clockwise)

Preceding gene: 237813243

Following gene: 237813245

Centisome position: 71.43

GC content: 73.28

Gene sequence:

>711_bases
ATGCCCGCTTCCGATCGCCACGACCATTTCCCCGGCCTGAGCCACCTGGGCGCGCTGCTCGCCGATCCGGGGCGCGCCGC
GATGCTCTGGGCGCTGATGGACGGCAGCGCGCGTCCCGCCGGCGAGCTCACGATGATCGCCGGTCTGTCGCCGTCGGCGG
CGAGCGCGCATCTCGCACGGCTCACGGACGGCGGCTTGCTCGCGCTCGACGTACGCGGCCGTCATCGCTATTACCGCATC
GCGACGCCCGACATCGCCGCGGCAATCGAGGCGCTCGCGAATGTCGCGCAGGCAGCCGCGCCGCAGCGCCCGATCCCGCA
GCCGGCGCGCACGGTGCCGCCCGACATGCGCTATGCGCGCACCTGCTACGACCACATGGCGGGCGAGCTCGCGGTCCAGG
TGTACGAGCGGCTGATATCGCGCGGCTGGCTGACGGCTTCGGGCGGCACGCTCGATGCGACGGCGGCGGGCGCCGCGCAG
TTCGCGCAGTGGGGCATCGACATCGGCGGCCAGCGCGCGAAGCGCCGGCGCTTCGCGTGCACCTGCCCCGATTGGAGCGA
GCGCCGTCCGCATCTGGGCGGCTCGCTCGGCGCGGCGCTCCTCGATAGCTTTTGCCGACGCGGCTGGCTCGAGCACGCGG
CAAAGCCGCGCGTGCTGCGCGTGACGCCCGCCGGCCAACGCGAATTCGATGCGTTGCTTACCGGCGGATGA

Upstream 100 bases:

>100_bases
CGATCAACCTCGGCACGCATTCGATATTTCAGCGCACCGCGAAACATCGAACGCGATACGCGCCTACACTCGAATCCTCC
CCTTGCTCCGAGGTTCGACC

Downstream 100 bases:

>100_bases
CGCGCGCTTTCATTGCTCCGACAAATTCCGCGGTGCCGACAACTCTTGTTACACGCACGTCAAATCGCATAACAAAACCA
TCGTCACTGAAACATGCCGA

Product: transcriptional regulator, ArsR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MPASDRHDHFPGLSHLGALLADPGRAAMLWALMDGSARPAGELTMIAGLSPSAASAHLARLTDGGLLALDVRGRHRYYRI
ATPDIAAAIEALANVAQAAAPQRPIPQPARTVPPDMRYARTCYDHMAGELAVQVYERLISRGWLTASGGTLDATAAGAAQ
FAQWGIDIGGQRAKRRRFACTCPDWSERRPHLGGSLGAALLDSFCRRGWLEHAAKPRVLRVTPAGQREFDALLTGG

Sequences:

>Translated_236_residues
MPASDRHDHFPGLSHLGALLADPGRAAMLWALMDGSARPAGELTMIAGLSPSAASAHLARLTDGGLLALDVRGRHRYYRI
ATPDIAAAIEALANVAQAAAPQRPIPQPARTVPPDMRYARTCYDHMAGELAVQVYERLISRGWLTASGGTLDATAAGAAQ
FAQWGIDIGGQRAKRRRFACTCPDWSERRPHLGGSLGAALLDSFCRRGWLEHAAKPRVLRVTPAGQREFDALLTGG
>Mature_235_residues
PASDRHDHFPGLSHLGALLADPGRAAMLWALMDGSARPAGELTMIAGLSPSAASAHLARLTDGGLLALDVRGRHRYYRIA
TPDIAAAIEALANVAQAAAPQRPIPQPARTVPPDMRYARTCYDHMAGELAVQVYERLISRGWLTASGGTLDATAAGAAQF
AQWGIDIGGQRAKRRRFACTCPDWSERRPHLGGSLGAALLDSFCRRGWLEHAAKPRVLRVTPAGQREFDALLTGG

Specific function: Unknown

COG id: COG0640

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 25204; Mature: 25073

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPASDRHDHFPGLSHLGALLADPGRAAMLWALMDGSARPAGELTMIAGLSPSAASAHLAR
CCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHH
LTDGGLLALDVRGRHRYYRIATPDIAAAIEALANVAQAAAPQRPIPQPARTVPPDMRYAR
CCCCCEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
TCYDHMAGELAVQVYERLISRGWLTASGGTLDATAAGAAQFAQWGIDIGGQRAKRRRFAC
HHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHHCCEEE
TCPDWSERRPHLGGSLGAALLDSFCRRGWLEHAAKPRVLRVTPAGQREFDALLTGG
CCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHCCCC
>Mature Secondary Structure 
PASDRHDHFPGLSHLGALLADPGRAAMLWALMDGSARPAGELTMIAGLSPSAASAHLAR
CCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHH
LTDGGLLALDVRGRHRYYRIATPDIAAAIEALANVAQAAAPQRPIPQPARTVPPDMRYAR
CCCCCEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
TCYDHMAGELAVQVYERLISRGWLTASGGTLDATAAGAAQFAQWGIDIGGQRAKRRRFAC
HHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHHCCEEE
TCPDWSERRPHLGGSLGAALLDSFCRRGWLEHAAKPRVLRVTPAGQREFDALLTGG
CCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]