| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is ybcJ [C]
Identifier: 237813237
GI number: 237813237
Start: 2921995
End: 2922216
Strand: Direct
Name: ybcJ [C]
Synonym: GBP346_A3004
Alternate gene names: 237813237
Gene position: 2921995-2922216 (Clockwise)
Preceding gene: 237813234
Following gene: 237813238
Centisome position: 71.29
GC content: 67.12
Gene sequence:
>222_bases ATGCCCAATCTCGATTTCACGCTGACCGGCGAATTCGTCGAACTGCATAACCTGCTGAAGCTCACGGGGCTCGCGGACAG CGGCGGCTCGGCGAAGATGATCGTCGCGTCGGGCGCCGTGAAGGTCGACGGCGCGGTCGAGCTGCGCAAGACCTGCAAGG TCCGCGCGGGGCAGGTCGTGCTGCTCGGCGACACGCGCATCGCCGTGCACGGCGCGTCATAG
Upstream 100 bases:
>100_bases GCGTGCGCCGCGCATCGCTTATGATGCGATGCCGTCGCCACGCGACGCGCTTTAGTGTTTCGCGCGCCTTTTCCGCGCGC GCGCTTTCGTTTCCAACGCC
Downstream 100 bases:
>100_bases CGAGCCCCTGTCGGCCGTAAGGCCATCGGCGAGTCTCGTCGACAGCGCTCCGGGAAACTCGTAAGCTGATCGTTTCCAAA AAACAAGCAAAGCGCGGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 73; Mature: 72
Protein sequence:
>73_residues MPNLDFTLTGEFVELHNLLKLTGLADSGGSAKMIVASGAVKVDGAVELRKTCKVRAGQVVLLGDTRIAVHGAS
Sequences:
>Translated_73_residues MPNLDFTLTGEFVELHNLLKLTGLADSGGSAKMIVASGAVKVDGAVELRKTCKVRAGQVVLLGDTRIAVHGAS >Mature_72_residues PNLDFTLTGEFVELHNLLKLTGLADSGGSAKMIVASGAVKVDGAVELRKTCKVRAGQVVLLGDTRIAVHGAS
Specific function: Unknown
COG id: COG2501
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI87081752, Length=57, Percent_Identity=54.3859649122807, Blast_Score=60, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 7549; Mature: 7418
Theoretical pI: Translated: 8.54; Mature: 8.54
Prosite motif: PS50889 S4
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPNLDFTLTGEFVELHNLLKLTGLADSGGSAKMIVASGAVKVDGAVELRKTCKVRAGQVV CCCCCEEEECCHHHHHHHEEEECCCCCCCCEEEEEECCCEEECCCEEEHHCCCCCCCCEE LLGDTRIAVHGAS EECCCEEEEEECC >Mature Secondary Structure PNLDFTLTGEFVELHNLLKLTGLADSGGSAKMIVASGAVKVDGAVELRKTCKVRAGQVV CCCCEEEECCHHHHHHHEEEECCCCCCCCEEEEEECCCEEECCCEEEHHCCCCCCCCEE LLGDTRIAVHGAS EECCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA