| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is pncB_2 [H]
Identifier: 237813229
GI number: 237813229
Start: 2916886
End: 2918085
Strand: Reverse
Name: pncB_2 [H]
Synonym: GBP346_A2994
Alternate gene names: 237813229
Gene position: 2918085-2916886 (Counterclockwise)
Preceding gene: 237813235
Following gene: 237813228
Centisome position: 71.2
GC content: 62.75
Gene sequence:
>1200_bases ATGATCATCACTTCGCTGCTCGATACCGACCTGTACAAATTCACGATGATGCAGGTCGTCCTGCATCATTTCCCGGCCGC AAGCGTCGAATATCGCTTCAAGTGCCGCACGCCCGGCGTCGATCTCGTGCCGTACATCGACGAGATCCGCGCCGAGGTTC GCTCGCTCTGCGAGCTGCGCTTCACCGATTCCGAGCTCGACTATCTGCGCCGGCTGCGCTTCGTCAAGAGCGATTTCGTC GATTTTCTCGCGCTCTTTCACCTGAACGAGAAGTACATCTCGATCACGCCGTCGCAAAAGGGCGGCGGCGAGATCGACAT CGAGATCAAGGGGCCGTGGCTGCACACGATCCTTTTCGAGATTCCGGTGCTCGCGATCGTCAACGAGGTGTACTTCCGCA ACACGCAGCGCCGGCCGGATTACCGCGAAGGGCGCGGCCGGCTGCGCGAGAAGATCAAGCTGCTCGGCGCGAAGCCCGAA TTCGCCGATTGCAAGATCGCCGATTACGGCACGCGCCGCCGCTTCTCGAAGGTCTGGCACGAGGAGGTGCTGCGCACGCT GCAGGACGGGCTCGGGCCGCAGTTCGCCGGCACGAGCAACGTCTATTACGCGATGACGCACGAGATCACGCCGCTCGGCA CGATGGCGCACGAATATCTGCAGGCGTGCCAGGCGCTCGGCCCGCGGCTGCGCGATTCGCAGACCTACGGTCTCGAGATG TGGGCGAAGGAATATCGCGGCGATCTCGGCATCGCGCTGTCCGACGTCTACGGGATGGACGCGTTCCTGCGCGACTTCGA CATGTACTTCTGCAAGCTCTTCGACGGCGCGCGCCACGATTCGGGCGATCCGTTCGACTGGGGCGAGCGGCTCATCAAGC ACTACGAGGAGAACCGCTGCGACCCGCGCACGAAGGTGCTCGTGTTCTCCGACGCGCTCGATATCCCGAAGGTCATGCAG CTGTACGCACGCTTTCGCGGACGCTGCAAGCTCGCGTTCGGCGTCGGCACGAACCTCACCAACGATCTCGGCTATCAGCC GTTGCAGATCGTCATCAAGATGGTGCGATGCAACGGGCAGCCGGTCGCGAAGCTGTCGGATTCGCCGGGCAAGAGCATGT GCGACGACAAGGCCTACCTCGCGTATCTGCGCCAGGTGTTCGGGATCACGCAGCCGCCCAACGACGACGCGGGCAAGTAA
Upstream 100 bases:
>100_bases CGGCGCCGCGCCGCATTCGGGTAACATGCGTCAACCGGAGGGCGGGCGCGCGAGGCGCGCAAACGCTCGGGCTCCGTTTC GATTTTGGCAGTCTGGAATC
Downstream 100 bases:
>100_bases CGCCGCCCGCGCGGGTGCGGACGCGGCGCCGGGAACGCGCGCGGGCGGTCCGGCAGCGTGTTTTTCGTACCGGCGGCGGC GGGCGTGCGCCGTCTCGGCC
Product: nicotinate phosphoribosyltransferase
Products: NA
Alternate protein names: NAPRTase [H]
Number of amino acids: Translated: 399; Mature: 399
Protein sequence:
>399_residues MIITSLLDTDLYKFTMMQVVLHHFPAASVEYRFKCRTPGVDLVPYIDEIRAEVRSLCELRFTDSELDYLRRLRFVKSDFV DFLALFHLNEKYISITPSQKGGGEIDIEIKGPWLHTILFEIPVLAIVNEVYFRNTQRRPDYREGRGRLREKIKLLGAKPE FADCKIADYGTRRRFSKVWHEEVLRTLQDGLGPQFAGTSNVYYAMTHEITPLGTMAHEYLQACQALGPRLRDSQTYGLEM WAKEYRGDLGIALSDVYGMDAFLRDFDMYFCKLFDGARHDSGDPFDWGERLIKHYEENRCDPRTKVLVFSDALDIPKVMQ LYARFRGRCKLAFGVGTNLTNDLGYQPLQIVIKMVRCNGQPVAKLSDSPGKSMCDDKAYLAYLRQVFGITQPPNDDAGK
Sequences:
>Translated_399_residues MIITSLLDTDLYKFTMMQVVLHHFPAASVEYRFKCRTPGVDLVPYIDEIRAEVRSLCELRFTDSELDYLRRLRFVKSDFV DFLALFHLNEKYISITPSQKGGGEIDIEIKGPWLHTILFEIPVLAIVNEVYFRNTQRRPDYREGRGRLREKIKLLGAKPE FADCKIADYGTRRRFSKVWHEEVLRTLQDGLGPQFAGTSNVYYAMTHEITPLGTMAHEYLQACQALGPRLRDSQTYGLEM WAKEYRGDLGIALSDVYGMDAFLRDFDMYFCKLFDGARHDSGDPFDWGERLIKHYEENRCDPRTKVLVFSDALDIPKVMQ LYARFRGRCKLAFGVGTNLTNDLGYQPLQIVIKMVRCNGQPVAKLSDSPGKSMCDDKAYLAYLRQVFGITQPPNDDAGK >Mature_399_residues MIITSLLDTDLYKFTMMQVVLHHFPAASVEYRFKCRTPGVDLVPYIDEIRAEVRSLCELRFTDSELDYLRRLRFVKSDFV DFLALFHLNEKYISITPSQKGGGEIDIEIKGPWLHTILFEIPVLAIVNEVYFRNTQRRPDYREGRGRLREKIKLLGAKPE FADCKIADYGTRRRFSKVWHEEVLRTLQDGLGPQFAGTSNVYYAMTHEITPLGTMAHEYLQACQALGPRLRDSQTYGLEM WAKEYRGDLGIALSDVYGMDAFLRDFDMYFCKLFDGARHDSGDPFDWGERLIKHYEENRCDPRTKVLVFSDALDIPKVMQ LYARFRGRCKLAFGVGTNLTNDLGYQPLQIVIKMVRCNGQPVAKLSDSPGKSMCDDKAYLAYLRQVFGITQPPNDDAGK
Specific function: NAD biosynthesis; nicotinamide to NaMN; second step. [C]
COG id: COG1488
COG function: function code H; Nicotinic acid phosphoribosyltransferase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the NAPRTase family [H]
Homologues:
Organism=Escherichia coli, GI1787162, Length=393, Percent_Identity=43.765903307888, Blast_Score=328, Evalue=3e-91, Organism=Saccharomyces cerevisiae, GI6324783, Length=417, Percent_Identity=28.537170263789, Blast_Score=193, Evalue=4e-50,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006406 - InterPro: IPR015977 - InterPro: IPR007229 - InterPro: IPR002638 [H]
Pfam domain/function: PF04095 NAPRTase [H]
EC number: =2.4.2.11 [H]
Molecular weight: Translated: 45961; Mature: 45961
Theoretical pI: Translated: 7.47; Mature: 7.47
Prosite motif: PS00213 LIPOCALIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIITSLLDTDLYKFTMMQVVLHHFPAASVEYRFKCRTPGVDLVPYIDEIRAEVRSLCELR CEEHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHC FTDSELDYLRRLRFVKSDFVDFLALFHLNEKYISITPSQKGGGEIDIEIKGPWLHTILFE CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEEECCHHHHHHHH IPVLAIVNEVYFRNTQRRPDYREGRGRLREKIKLLGAKPEFADCKIADYGTRRRFSKVWH HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHH EEVLRTLQDGLGPQFAGTSNVYYAMTHEITPLGTMAHEYLQACQALGPRLRDSQTYGLEM HHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHH WAKEYRGDLGIALSDVYGMDAFLRDFDMYFCKLFDGARHDSGDPFDWGERLIKHYEENRC HHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC DPRTKVLVFSDALDIPKVMQLYARFRGRCKLAFGVGTNLTNDLGYQPLQIVIKMVRCNGQ CCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCC PVAKLSDSPGKSMCDDKAYLAYLRQVFGITQPPNDDAGK CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MIITSLLDTDLYKFTMMQVVLHHFPAASVEYRFKCRTPGVDLVPYIDEIRAEVRSLCELR CEEHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHC FTDSELDYLRRLRFVKSDFVDFLALFHLNEKYISITPSQKGGGEIDIEIKGPWLHTILFE CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEEECCHHHHHHHH IPVLAIVNEVYFRNTQRRPDYREGRGRLREKIKLLGAKPEFADCKIADYGTRRRFSKVWH HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHH EEVLRTLQDGLGPQFAGTSNVYYAMTHEITPLGTMAHEYLQACQALGPRLRDSQTYGLEM HHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHH WAKEYRGDLGIALSDVYGMDAFLRDFDMYFCKLFDGARHDSGDPFDWGERLIKHYEENRC HHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC DPRTKVLVFSDALDIPKVMQLYARFRGRCKLAFGVGTNLTNDLGYQPLQIVIKMVRCNGQ CCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCC PVAKLSDSPGKSMCDDKAYLAYLRQVFGITQPPNDDAGK CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA