| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is 237813227
Identifier: 237813227
GI number: 237813227
Start: 2914581
End: 2916089
Strand: Reverse
Name: 237813227
Synonym: GBP346_A2992
Alternate gene names: NA
Gene position: 2916089-2914581 (Counterclockwise)
Preceding gene: 237813228
Following gene: 237813226
Centisome position: 71.15
GC content: 66.6
Gene sequence:
>1509_bases GTGACGCGTGATGCGGCCGCCGCCGCGTCACGCGCCGTATCCATTCGCATTTCAAGAGGAATTCACATGAAACGACATGC CGCCTGGGCGGGCATGGCGCTGGGAGGCGCATTAGGCGCCGCGCCCGCGCTCGCATCGGCCGCAACGCTCGACGGTGCCG CGCTTTCCGCGTTCTGGGCGGTTCCGTTCGCCGGCATCCTGCTGTCGATCGCGCTCTTTCCGCTGATCGCGCCGGTGTTC TGGCATCACCATTTCGGCAAGATCGCGGCGGCGTGGGCGGTTGCGTTCCTGGTGCCGTTCGCCGCGACGTTCGGCTTCGG CACCGCGTTCGGCACGCTGATGCACGCGCTGTTCGAGGAATACATCCCGTTCATCGTGCTGCTGAGCGCGCTGTATACGG TCGCGGGCGGTATCTGCGTGCGCGGCAACCTGCACGGCACGCCCAGGCTCAATACGGGCATCCTCGCGCTCGGCACCGTG CTCGCGAGCGTGATGGGCACCACGGGCGCCGCGATGCTGCTGATCCGTCCGCTCCTGCGCGCGAACGACAATCGCAAGCA CGTCGTGCACGTCGTCGTGTTCTTCATCTTTCTCGTGGCGAACGCGGGCGGCTCGCTGTCGCCGCTCGGCGATCCGCCGC TCTTCCTCGGCTTTCTGAACGGCGTCGATTTCTTCTGGACGACGATCCATCTCGCGCTGCCGATGCTGTTCATCTGCGCG ATCCTGCTCACGCTCTTCTTCGTGCTCGATACCTACTTCTATCGAAAGGGCGGCGAGGAAGGCAAGCCGTTCCTCGATCC GACGCCCGATTCGCACGGCGTGTCGATCGAGGGCAAGGTCAATTTCGTGCTGCTCGGCGCGGTGATCGCGCTCGTGCTGA TGAGCGGCCTCTGGAAGCCGGGCATCGCGTTCGATCTGTTCGGCACGCACGTCGCGCTGCAGAATGCGGTGCGCGACGTC GCGCTCGTCGCGGTCGCGCTCGTGTCGCTCGCGGTCACGCCGCGCTCGGCGCGCGAGGGCAACGCGTTCAACTGGGCGCC GATCGAGGAGGTCGCGAAGCTGTTCGCGGGCATCTTCGTGACGATCGCGCCCGTGATCGTGATTCTGCGCGCGGGCGGCG ACGGCGTGTTCGCGCCGATCGTCCATCTCGTCACGGGCGCCGACGGCAAGCCGGTCGACGCGATGTACTTCTGGGCGACG GGCGTGCTCTCGTCGTTCCTCGACAACGCGCCGACCTATCTCGTGTTCTTCAATCTCGCGGGCGGCGATGCGCAGACGCT GATGACGACGGGGGCGACGACGCTCGCGGCGATCTCGGCGGGCGCCGTGTTCATGGGCGCGAACAGCTACATCGGCAACG CGCCGAATTTCATGGTGAAGGCGATCGCCGAGTCGCGCGGCGTGCGGATGCCGAGCTTCTTCGCGTACCTCGGCTGGGCG CTCGCGATTCTCGTGCCGGTGTTCCTGCTGACGACGTGGGTGTTCTTCAGCGCTCAGGCGGCGCAATGA
Upstream 100 bases:
>100_bases GCGGTGAACTTCGTGTCGGGGCCGTCGCGCACCGGTGACATCGAGCAGACGATCGTGCTCGGCGCGCACGGGCCGTCGCG GGTTCACGCGATCGTCGTGC
Downstream 100 bases:
>100_bases CGGCCGCACGGGCGATGCGCGGCGCGATGCGCGCGCGCCGCCCGCGCGGCGCAACGGAGACGGCAATGCAGAAAATCCTG GTCGCGCGCCCGATCTTTCC
Product: putative transporter
Products: NA
Alternate protein names: Transmembrane Protein; Arsenite-Anitmonite Efflux Pump ArsB Family; Na+ Antiporter; Na+/H+ Antiporter; Transporter Uit6 Family; Signal Peptide; ArsB Family Arsenate Permease; Na+/H+ Antiporter NhaD And Related Arsenite Permeases; Na+/H+ Antiporter NhaD; Arsenite Transport Protein ArsB; NA+/H+ Antiporter Permease; Na+/H+ Antiporter NhaD-Like Permease; Na+/H+ Antiporter NhaD And Related Arsenite Permeases-Like; Na+/H+ Antiporter NhaD Or Related Arsenite Permease
Number of amino acids: Translated: 502; Mature: 501
Protein sequence:
>502_residues MTRDAAAAASRAVSIRISRGIHMKRHAAWAGMALGGALGAAPALASAATLDGAALSAFWAVPFAGILLSIALFPLIAPVF WHHHFGKIAAAWAVAFLVPFAATFGFGTAFGTLMHALFEEYIPFIVLLSALYTVAGGICVRGNLHGTPRLNTGILALGTV LASVMGTTGAAMLLIRPLLRANDNRKHVVHVVVFFIFLVANAGGSLSPLGDPPLFLGFLNGVDFFWTTIHLALPMLFICA ILLTLFFVLDTYFYRKGGEEGKPFLDPTPDSHGVSIEGKVNFVLLGAVIALVLMSGLWKPGIAFDLFGTHVALQNAVRDV ALVAVALVSLAVTPRSAREGNAFNWAPIEEVAKLFAGIFVTIAPVIVILRAGGDGVFAPIVHLVTGADGKPVDAMYFWAT GVLSSFLDNAPTYLVFFNLAGGDAQTLMTTGATTLAAISAGAVFMGANSYIGNAPNFMVKAIAESRGVRMPSFFAYLGWA LAILVPVFLLTTWVFFSAQAAQ
Sequences:
>Translated_502_residues MTRDAAAAASRAVSIRISRGIHMKRHAAWAGMALGGALGAAPALASAATLDGAALSAFWAVPFAGILLSIALFPLIAPVF WHHHFGKIAAAWAVAFLVPFAATFGFGTAFGTLMHALFEEYIPFIVLLSALYTVAGGICVRGNLHGTPRLNTGILALGTV LASVMGTTGAAMLLIRPLLRANDNRKHVVHVVVFFIFLVANAGGSLSPLGDPPLFLGFLNGVDFFWTTIHLALPMLFICA ILLTLFFVLDTYFYRKGGEEGKPFLDPTPDSHGVSIEGKVNFVLLGAVIALVLMSGLWKPGIAFDLFGTHVALQNAVRDV ALVAVALVSLAVTPRSAREGNAFNWAPIEEVAKLFAGIFVTIAPVIVILRAGGDGVFAPIVHLVTGADGKPVDAMYFWAT GVLSSFLDNAPTYLVFFNLAGGDAQTLMTTGATTLAAISAGAVFMGANSYIGNAPNFMVKAIAESRGVRMPSFFAYLGWA LAILVPVFLLTTWVFFSAQAAQ >Mature_501_residues TRDAAAAASRAVSIRISRGIHMKRHAAWAGMALGGALGAAPALASAATLDGAALSAFWAVPFAGILLSIALFPLIAPVFW HHHFGKIAAAWAVAFLVPFAATFGFGTAFGTLMHALFEEYIPFIVLLSALYTVAGGICVRGNLHGTPRLNTGILALGTVL ASVMGTTGAAMLLIRPLLRANDNRKHVVHVVVFFIFLVANAGGSLSPLGDPPLFLGFLNGVDFFWTTIHLALPMLFICAI LLTLFFVLDTYFYRKGGEEGKPFLDPTPDSHGVSIEGKVNFVLLGAVIALVLMSGLWKPGIAFDLFGTHVALQNAVRDVA LVAVALVSLAVTPRSAREGNAFNWAPIEEVAKLFAGIFVTIAPVIVILRAGGDGVFAPIVHLVTGADGKPVDAMYFWATG VLSSFLDNAPTYLVFFNLAGGDAQTLMTTGATTLAAISAGAVFMGANSYIGNAPNFMVKAIAESRGVRMPSFFAYLGWAL AILVPVFLLTTWVFFSAQAAQ
Specific function: Unknown
COG id: COG1055
COG function: function code P; Na+/H+ antiporter NhaD and related arsenite permeases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52869; Mature: 52738
Theoretical pI: Translated: 9.02; Mature: 9.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRDAAAAASRAVSIRISRGIHMKRHAAWAGMALGGALGAAPALASAATLDGAALSAFWA CCCHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH VPFAGILLSIALFPLIAPVFWHHHFGKIAAAWAVAFLVPFAATFGFGTAFGTLMHALFEE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YIPFIVLLSALYTVAGGICVRGNLHGTPRLNTGILALGTVLASVMGTTGAAMLLIRPLLR HHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH ANDNRKHVVHVVVFFIFLVANAGGSLSPLGDPPLFLGFLNGVDFFWTTIHLALPMLFICA CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH ILLTLFFVLDTYFYRKGGEEGKPFLDPTPDSHGVSIEGKVNFVLLGAVIALVLMSGLWKP HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCC GIAFDLFGTHVALQNAVRDVALVAVALVSLAVTPRSAREGNAFNWAPIEEVAKLFAGIFV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH TIAPVIVILRAGGDGVFAPIVHLVTGADGKPVDAMYFWATGVLSSFLDNAPTYLVFFNLA HHHHHHHEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEC GGDAQTLMTTGATTLAAISAGAVFMGANSYIGNAPNFMVKAIAESRGVRMPSFFAYLGWA CCCHHHHHHCCHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHH LAILVPVFLLTTWVFFSAQAAQ HHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure TRDAAAAASRAVSIRISRGIHMKRHAAWAGMALGGALGAAPALASAATLDGAALSAFWA CCHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH VPFAGILLSIALFPLIAPVFWHHHFGKIAAAWAVAFLVPFAATFGFGTAFGTLMHALFEE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YIPFIVLLSALYTVAGGICVRGNLHGTPRLNTGILALGTVLASVMGTTGAAMLLIRPLLR HHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH ANDNRKHVVHVVVFFIFLVANAGGSLSPLGDPPLFLGFLNGVDFFWTTIHLALPMLFICA CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH ILLTLFFVLDTYFYRKGGEEGKPFLDPTPDSHGVSIEGKVNFVLLGAVIALVLMSGLWKP HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCC GIAFDLFGTHVALQNAVRDVALVAVALVSLAVTPRSAREGNAFNWAPIEEVAKLFAGIFV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH TIAPVIVILRAGGDGVFAPIVHLVTGADGKPVDAMYFWATGVLSSFLDNAPTYLVFFNLA HHHHHHHEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEC GGDAQTLMTTGATTLAAISAGAVFMGANSYIGNAPNFMVKAIAESRGVRMPSFFAYLGWA CCCHHHHHHCCHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHH LAILVPVFLLTTWVFFSAQAAQ HHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA