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The map label for this gene is yjjV [H]

Identifier: 237813002

GI number: 237813002

Start: 2690827

End: 2691615

Strand: Reverse

Name: yjjV [H]

Synonym: GBP346_A2762

Alternate gene names: 237813002

Gene position: 2691615-2690827 (Counterclockwise)

Preceding gene: 237813003

Following gene: 237813001

Centisome position: 65.67

GC content: 70.22

Gene sequence:

>789_bases
ATGTGGATCGACACGCATTGCCATCTCGATGCGTCGGAGTTCGACGCCGACCGCGAGGTCGTCGCCGGCGCGGCGCGGGC
GGCGGGCGTGTCGCGCATCGTGATTCCGAGCGTCGGGCGCACGAACTTCCCGACGGTGCGCGCGCTCGCGCATGCGACGC
GCGGCGCGGTGTATGCGCTCGGCATTCATCCGATGTACACGCCGCATGCGCGCGACGAAGACCTCGACCGGCTGCGCATG
GAAGTCGAGGCGAGCCTCGACGATCCGCGCTTCGTCGGCATCGGCGAGATCGGTCTCGACTACTTCGTGCCGGGGCTCGA
CGAGCGCCGCCAGCAATTCTTCTATGACGCGCAACTGCGGCTCGCGCGCGAGTTCGATCTGCCTGTCGTGTGCCACGTGC
GCAAATCGCAGGATCGCGTGCTGGCCGGGCTGCGGCGCGCGGGCGTGCGGCGCGGCATCGCGCATGCGTTCAACGGCAGC
TTCCAGCAGGCCGACGCGTATCTCGCGCAAGGGCTCAAGCTCGGCTTCGGCGGCAACGTGACGTTCGAGCGCGCGCGGCA
GATCAGGCGGCTCGCCGGGCAACTGCCGCTCGACGCGCTCGTCGTCGAGACCGACGCGCCCGACATTCCCCCCGAGTGGC
GCGACAGGCAGCGCAACACGCCCGACCAGGTGCCGCGCATCGGCGCCGTGATCGCCGAGCTGCGCGGCATCGGCGTCGAT
GCGCTTTCCCTATCCACTTCGGCCAACGCGCTCGCCGCGCTGCCGCGGCTCGCGCTTTCGTCCGCATAA

Upstream 100 bases:

>100_bases
ATCGTCACGCACGATCCCGATCTCGCCGCGCGCTGCGACCGCATCCTGCGGCTGCGCGACGGCGTGCTGCACGAGGAGCC
GGCCGTGCCGGTGTGACGCG

Downstream 100 bases:

>100_bases
TCGGTTCGTCATGGACATGCGCCGCTCGGGCGGCGCGCAAGGCGGAGGCGCGATGCGGGCGAAGTGCGGCGCGTTCGCGC
TCGGCGTGGTCGCGCTGCAG

Product: hydrolase, TatD family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MWIDTHCHLDASEFDADREVVAGAARAAGVSRIVIPSVGRTNFPTVRALAHATRGAVYALGIHPMYTPHARDEDLDRLRM
EVEASLDDPRFVGIGEIGLDYFVPGLDERRQQFFYDAQLRLAREFDLPVVCHVRKSQDRVLAGLRRAGVRRGIAHAFNGS
FQQADAYLAQGLKLGFGGNVTFERARQIRRLAGQLPLDALVVETDAPDIPPEWRDRQRNTPDQVPRIGAVIAELRGIGVD
ALSLSTSANALAALPRLALSSA

Sequences:

>Translated_262_residues
MWIDTHCHLDASEFDADREVVAGAARAAGVSRIVIPSVGRTNFPTVRALAHATRGAVYALGIHPMYTPHARDEDLDRLRM
EVEASLDDPRFVGIGEIGLDYFVPGLDERRQQFFYDAQLRLAREFDLPVVCHVRKSQDRVLAGLRRAGVRRGIAHAFNGS
FQQADAYLAQGLKLGFGGNVTFERARQIRRLAGQLPLDALVVETDAPDIPPEWRDRQRNTPDQVPRIGAVIAELRGIGVD
ALSLSTSANALAALPRLALSSA
>Mature_262_residues
MWIDTHCHLDASEFDADREVVAGAARAAGVSRIVIPSVGRTNFPTVRALAHATRGAVYALGIHPMYTPHARDEDLDRLRM
EVEASLDDPRFVGIGEIGLDYFVPGLDERRQQFFYDAQLRLAREFDLPVVCHVRKSQDRVLAGLRRAGVRRGIAHAFNGS
FQQADAYLAQGLKLGFGGNVTFERARQIRRLAGQLPLDALVVETDAPDIPPEWRDRQRNTPDQVPRIGAVIAELRGIGVD
ALSLSTSANALAALPRLALSSA

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=269, Percent_Identity=30.4832713754647, Blast_Score=101, Evalue=6e-22,
Organism=Homo sapiens, GI226061614, Length=258, Percent_Identity=29.8449612403101, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI110349734, Length=269, Percent_Identity=30.4832713754647, Blast_Score=98, Evalue=7e-21,
Organism=Homo sapiens, GI226061853, Length=276, Percent_Identity=29.7101449275362, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI226061595, Length=239, Percent_Identity=29.7071129707113, Blast_Score=77, Evalue=1e-14,
Organism=Escherichia coli, GI87082439, Length=250, Percent_Identity=38.8, Blast_Score=177, Evalue=6e-46,
Organism=Escherichia coli, GI1787342, Length=255, Percent_Identity=31.3725490196078, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI48994985, Length=259, Percent_Identity=28.957528957529, Blast_Score=97, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI71980746, Length=261, Percent_Identity=26.4367816091954, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17559024, Length=224, Percent_Identity=26.3392857142857, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24648690, Length=278, Percent_Identity=26.978417266187, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI221330018, Length=214, Percent_Identity=27.1028037383178, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24586117, Length=214, Percent_Identity=27.1028037383178, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.- [C]

Molecular weight: Translated: 28753; Mature: 28753

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWIDTHCHLDASEFDADREVVAGAARAAGVSRIVIPSVGRTNFPTVRALAHATRGAVYAL
CEECCEECCCHHHHCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCEEEEE
GIHPMYTPHARDEDLDRLRMEVEASLDDPRFVGIGEIGLDYFVPGLDERRQQFFYDAQLR
ECCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHH
LAREFDLPVVCHVRKSQDRVLAGLRRAGVRRGIAHAFNGSFQQADAYLAQGLKLGFGGNV
HHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEECCCCCC
TFERARQIRRLAGQLPLDALVVETDAPDIPPEWRDRQRNTPDQVPRIGAVIAELRGIGVD
CHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCE
ALSLSTSANALAALPRLALSSA
EEECCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MWIDTHCHLDASEFDADREVVAGAARAAGVSRIVIPSVGRTNFPTVRALAHATRGAVYAL
CEECCEECCCHHHHCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCEEEEE
GIHPMYTPHARDEDLDRLRMEVEASLDDPRFVGIGEIGLDYFVPGLDERRQQFFYDAQLR
ECCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECHHHHHHHCCCHHHHHHHHHHHHHHH
LAREFDLPVVCHVRKSQDRVLAGLRRAGVRRGIAHAFNGSFQQADAYLAQGLKLGFGGNV
HHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEECCCCCC
TFERARQIRRLAGQLPLDALVVETDAPDIPPEWRDRQRNTPDQVPRIGAVIAELRGIGVD
CHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCE
ALSLSTSANALAALPRLALSSA
EEECCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]