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The map label for this gene is traC [H]

Identifier: 237812963

GI number: 237812963

Start: 2653029

End: 2655521

Strand: Reverse

Name: traC [H]

Synonym: GBP346_A2723

Alternate gene names: 237812963

Gene position: 2655521-2653029 (Counterclockwise)

Preceding gene: 237812964

Following gene: 237812962

Centisome position: 64.79

GC content: 65.62

Gene sequence:

>2493_bases
ATGTCGACGCTCGATCAAATCGTTCAGCAGCTCCGTAACGCCGATCATCCGGAACTGCCGTCCGGCCATCCGGTCGCGGA
TGGCAAGCATCATCGCTACGGCCCGCGCAAGAAGTACTGGTATCAGTTGCGCGAGGTCGTCAGCAAGGGGGCGGTGATCG
GCTATACGGGCACGTTCGGTCACTTCTCCGGCGACGATCCGGGCACGGAGCGATTCCAGTGGAACGGTGCGCCGCTGAGC
GAGGAAGCGCTCGCCGAGACGCGTCGCCGCCAAGAGGCCGCCGAGCGGGCGGAAGCGGAACGCGCGGCGCGTGCGGCACG
CATGGCCGCGAACCGCGCGTGCGACCAATGGGCGCGCGCGAGCGAACAAGGCGCATCGGCCTATCTGGAACGCAAGCAGG
TGACGGCCGAAGGCGTGCGGTTCGATTCGGACGGCACGATCTTCGTGCCCATGTATCAGTACGGCGACGAGGCGCGGCTC
GTGGGGCTTCAGAAGATCACGCCGGAAGGCGCGAAACGCTTCAACAAAGGCATGGAGAAGAAGGGCGCGGCCTGCCTGCT
CGGCGAAGTGAAGGCGGACGATCAACTCGTGATGATCGCCGAGGGCTATGCGACCGGCCGCTCGGTGCGCATGGCGACGG
CCGAAGCGTTCGCGCTTTGCGTCTGCTTCGATGCGGGGGGGATCCTGTCGACTGCCCGCTATCTGCGCGACGCACATCCG
AACACGCACGTGCTGATCTGCGCGGACGACGACTGGAAGATCGAGCAACGGATGCGCGACTGGCTCGCGGAGGAATTCGA
CTTCCGGGGCGAGCTGCCGTTCGATGTCGCGCCGACCCGGATCGAGGCGAAGAAGACGTGGTACATGGTCGCCGCGCATC
GCCGCGTCGACGACAACGGCGTGGCTTACGTCGAGGTGACGTACGGTAACGACGTCCTGCCGCAGCGGCGCAAGCGCTTC
GAGAATGCCGGCCTGAAACGGGCATACGAAGCGGCCGCCGAGGTCGACGGCGTCAGCGTCGTCTATCCGACGTTCGCCGA
TCGCGGCGAGCGCAAGCTTACCGACTTCAACGATCTGCACGTCGAGGAAGGGTTGGAGGCGGTCACGCGGCAGGTGCAGG
CGGCGATCCTGTCGGTCCTCGCGCCAGCAAGCGAAGACGTTCGCACGGCCGCCGTCGATGCCGAACGACCGACGCCGGCC
GCGGCGTCCGCTGCCGCAGGACAGGCGGAATGGGATGGACGCGAGGCTGAGAATGGCGCGCACACGTGGGAGCGGGATCT
CGCGCGGTCGGACAAGGGCACGCTGTTGCCGACGCTCGGCAACGTGCACCTGATCCTGTCGAATCACAAGGCGTGGCGGG
GCGTGATCGAGCAGGACGATTTCGGCGGTCGTGTGATGAAGCGCAAGGCCCCGCCGTTCCCGCAGGGCGCCGTGGGCGAA
TGGACGGACATGGACGATCAGCGCTGCGTGCTCTGGTTGTCGCAGCGGTACGGTATTTCGGTGCGCACCGATATCGTGAT
GAACGCGGTGCTGCTGGTCGCGGACGCGACGCACTTTCACGATGTTCGCGAATACCTCGGGCGGCTGGAATGGGATGGCG
TGCCGCGCGTGCGCTCGATGCCGTCGACGTATCTGCGCGTGGCCGACAGCGAGTATGTGCAACTGGCCTTCATGAAGTGG
ATGATCGCGGCCGTCGCGCGCGTGATGCAGCCCGGCTGCAAGGTCGATAACGTGCTGATCCTCGAAGGCAAGCAGGGCGC
TCGCAAGTCGACGGCGCTGAAGGTGCTGGCCGGCGGACAATGGTTCACCGACACGCCGATCCAGATCGGCAACAAGGACA
CCTATGCGGTGATGGCGGGCAAGTGGGTGATCGAGCTGGCCGAGCTGGACTCGTTGAACAAAGCGGACTCGTCGGCGGTC
AAGAGCTTCTTCGCGACGGCCGTCGACCGGTTCCGGAACTTCTACGGCAAGCGCGCGACGGACGTGCCGCGTCAGTGCGT
GTTCGCGGGTTCCGTCAACTTCGATACGTACCTCAAAGATGAGTCGGGCAACCGGCGTTACTGGCCGTTGCGCGTGGGCG
GCTTGGTCGATATCGACGGCATCGCGCGCGTGCGCGATCAGTTGTGGGCCGAAGCTGTCCACCTGTACCGCTCGGGCGTC
GTGTGGCACGTGACGGAGCAGGAGCGCCCGCTGTTCGAGATCGAGCAGGCCGAGCGGTACGAAGGCGACGTGTACGAGGA
CAAGATCGCGAAGGCGCTGGAATACGTGTCGCACACGACGATGGAGACGATCCTCGCGGACATCCTGAAGCTCGACACGT
CGAAATGGACGCTTGCGGAACAGCGCCGTATCGGCAAGGCGCTGAAATCCCTCGGGTGGGTGCGCAAGCGTGAGTCGACG
GGTTCGCGCGGCTGGTACTACGTGCGTGAGGAGCAGGAGCCGGAAGCGGCGCTCGAAGCGGTCGCGGCAGGCGATGACGA
CAGCCCGCTTTGA

Upstream 100 bases:

>100_bases
TTGCGTTCGCCGCATCGCATCTTTCCCCCATTTCTTTCCCCTCGCCGTGCGTTCGGATTCGCGCGCGCGAGGGACTGCTT
TCAAGAGGTGAATACTCCTT

Downstream 100 bases:

>100_bases
TCAGGATCGGCGCGCCGCGATGCTGTTCGCGGCGCGCCGCGTTGCCCGCTTTGGCGCGCCGTGGACGTCCCGTGTCCCAG
CGTCCCAAAGCACGGCTTCG

Product: virulence-associated E family protein

Products: NA

Alternate protein names: Replication primase [H]

Number of amino acids: Translated: 830; Mature: 829

Protein sequence:

>830_residues
MSTLDQIVQQLRNADHPELPSGHPVADGKHHRYGPRKKYWYQLREVVSKGAVIGYTGTFGHFSGDDPGTERFQWNGAPLS
EEALAETRRRQEAAERAEAERAARAARMAANRACDQWARASEQGASAYLERKQVTAEGVRFDSDGTIFVPMYQYGDEARL
VGLQKITPEGAKRFNKGMEKKGAACLLGEVKADDQLVMIAEGYATGRSVRMATAEAFALCVCFDAGGILSTARYLRDAHP
NTHVLICADDDWKIEQRMRDWLAEEFDFRGELPFDVAPTRIEAKKTWYMVAAHRRVDDNGVAYVEVTYGNDVLPQRRKRF
ENAGLKRAYEAAAEVDGVSVVYPTFADRGERKLTDFNDLHVEEGLEAVTRQVQAAILSVLAPASEDVRTAAVDAERPTPA
AASAAAGQAEWDGREAENGAHTWERDLARSDKGTLLPTLGNVHLILSNHKAWRGVIEQDDFGGRVMKRKAPPFPQGAVGE
WTDMDDQRCVLWLSQRYGISVRTDIVMNAVLLVADATHFHDVREYLGRLEWDGVPRVRSMPSTYLRVADSEYVQLAFMKW
MIAAVARVMQPGCKVDNVLILEGKQGARKSTALKVLAGGQWFTDTPIQIGNKDTYAVMAGKWVIELAELDSLNKADSSAV
KSFFATAVDRFRNFYGKRATDVPRQCVFAGSVNFDTYLKDESGNRRYWPLRVGGLVDIDGIARVRDQLWAEAVHLYRSGV
VWHVTEQERPLFEIEQAERYEGDVYEDKIAKALEYVSHTTMETILADILKLDTSKWTLAEQRRIGKALKSLGWVRKREST
GSRGWYYVREEQEPEAALEAVAAGDDDSPL

Sequences:

>Translated_830_residues
MSTLDQIVQQLRNADHPELPSGHPVADGKHHRYGPRKKYWYQLREVVSKGAVIGYTGTFGHFSGDDPGTERFQWNGAPLS
EEALAETRRRQEAAERAEAERAARAARMAANRACDQWARASEQGASAYLERKQVTAEGVRFDSDGTIFVPMYQYGDEARL
VGLQKITPEGAKRFNKGMEKKGAACLLGEVKADDQLVMIAEGYATGRSVRMATAEAFALCVCFDAGGILSTARYLRDAHP
NTHVLICADDDWKIEQRMRDWLAEEFDFRGELPFDVAPTRIEAKKTWYMVAAHRRVDDNGVAYVEVTYGNDVLPQRRKRF
ENAGLKRAYEAAAEVDGVSVVYPTFADRGERKLTDFNDLHVEEGLEAVTRQVQAAILSVLAPASEDVRTAAVDAERPTPA
AASAAAGQAEWDGREAENGAHTWERDLARSDKGTLLPTLGNVHLILSNHKAWRGVIEQDDFGGRVMKRKAPPFPQGAVGE
WTDMDDQRCVLWLSQRYGISVRTDIVMNAVLLVADATHFHDVREYLGRLEWDGVPRVRSMPSTYLRVADSEYVQLAFMKW
MIAAVARVMQPGCKVDNVLILEGKQGARKSTALKVLAGGQWFTDTPIQIGNKDTYAVMAGKWVIELAELDSLNKADSSAV
KSFFATAVDRFRNFYGKRATDVPRQCVFAGSVNFDTYLKDESGNRRYWPLRVGGLVDIDGIARVRDQLWAEAVHLYRSGV
VWHVTEQERPLFEIEQAERYEGDVYEDKIAKALEYVSHTTMETILADILKLDTSKWTLAEQRRIGKALKSLGWVRKREST
GSRGWYYVREEQEPEAALEAVAAGDDDSPL
>Mature_829_residues
STLDQIVQQLRNADHPELPSGHPVADGKHHRYGPRKKYWYQLREVVSKGAVIGYTGTFGHFSGDDPGTERFQWNGAPLSE
EALAETRRRQEAAERAEAERAARAARMAANRACDQWARASEQGASAYLERKQVTAEGVRFDSDGTIFVPMYQYGDEARLV
GLQKITPEGAKRFNKGMEKKGAACLLGEVKADDQLVMIAEGYATGRSVRMATAEAFALCVCFDAGGILSTARYLRDAHPN
THVLICADDDWKIEQRMRDWLAEEFDFRGELPFDVAPTRIEAKKTWYMVAAHRRVDDNGVAYVEVTYGNDVLPQRRKRFE
NAGLKRAYEAAAEVDGVSVVYPTFADRGERKLTDFNDLHVEEGLEAVTRQVQAAILSVLAPASEDVRTAAVDAERPTPAA
ASAAAGQAEWDGREAENGAHTWERDLARSDKGTLLPTLGNVHLILSNHKAWRGVIEQDDFGGRVMKRKAPPFPQGAVGEW
TDMDDQRCVLWLSQRYGISVRTDIVMNAVLLVADATHFHDVREYLGRLEWDGVPRVRSMPSTYLRVADSEYVQLAFMKWM
IAAVARVMQPGCKVDNVLILEGKQGARKSTALKVLAGGQWFTDTPIQIGNKDTYAVMAGKWVIELAELDSLNKADSSAVK
SFFATAVDRFRNFYGKRATDVPRQCVFAGSVNFDTYLKDESGNRRYWPLRVGGLVDIDGIARVRDQLWAEAVHLYRSGVV
WHVTEQERPLFEIEQAERYEGDVYEDKIAKALEYVSHTTMETILADILKLDTSKWTLAEQRRIGKALKSLGWVRKRESTG
SRGWYYVREEQEPEAALEAVAAGDDDSPL

Specific function: Required for autonomous replication in E.coli. Transferred into the recipient cell during bacterial conjugation. Catalyzes the synthesis of short oligoribonucleotide primers with CpA or pCpA at their 5'-termini on a single stranded template DNA [H]

COG id: COG5545

COG function: function code R; Predicted P-loop ATPase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013610
- InterPro:   IPR006171 [H]

Pfam domain/function: PF08401 DUF1738; PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 92917; Mature: 92786

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTLDQIVQQLRNADHPELPSGHPVADGKHHRYGPRKKYWYQLREVVSKGAVIGYTGTFG
CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCC
HFSGDDPGTERFQWNGAPLSEEALAETRRRQEAAERAEAERAARAARMAANRACDQWARA
CCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SEQGASAYLERKQVTAEGVRFDSDGTIFVPMYQYGDEARLVGLQKITPEGAKRFNKGMEK
HHHHHHHHHHHHHHHHCCEEECCCCEEEEEEHHCCCCEEEEEHHHCCHHHHHHHHHCHHH
KGAACLLGEVKADDQLVMIAEGYATGRSVRMATAEAFALCVCFDAGGILSTARYLRDAHP
CCCEEEEECCCCCCCEEEEECCCCCCCEEEEHHHHHEEEEEEECCCCHHHHHHHHHHCCC
NTHVLICADDDWKIEQRMRDWLAEEFDFRGELPFDVAPTRIEAKKTWYMVAAHRRVDDNG
CCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCEEEEEEEECCCCCCC
VAYVEVTYGNDVLPQRRKRFENAGLKRAYEAAAEVDGVSVVYPTFADRGERKLTDFNDLH
EEEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCEEEECCHHCCCCCCCCCCHHHH
VEEGLEAVTRQVQAAILSVLAPASEDVRTAAVDAERPTPAAASAAAGQAEWDGREAENGA
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEECCCCCCCCHHHHCCCCCCCCCCCCCCCC
HTWERDLARSDKGTLLPTLGNVHLILSNHKAWRGVIEQDDFGGRVMKRKAPPFPQGAVGE
HHHHHHHHCCCCCCEEECCCCEEEEEECCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCC
WTDMDDQRCVLWLSQRYGISVRTDIVMNAVLLVADATHFHDVREYLGRLEWDGVPRVRSM
CCCCCCCEEEEEEHHHCCCEEEHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHCC
PSTYLRVADSEYVQLAFMKWMIAAVARVMQPGCKVDNVLILEGKQGARKSTALKVLAGGQ
CCHHEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHEEEEEECCC
WFTDTPIQIGNKDTYAVMAGKWVIELAELDSLNKADSSAVKSFFATAVDRFRNFYGKRAT
EECCCCCEECCCCEEEEEECCCEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
DVPRQCVFAGSVNFDTYLKDESGNRRYWPLRVGGLVDIDGIARVRDQLWAEAVHLYRSGV
CCCCCEEEECCCCCCEEEECCCCCCEEEEEEECCEEECHHHHHHHHHHHHHHHHHHHCCC
VWHVTEQERPLFEIEQAERYEGDVYEDKIAKALEYVSHTTMETILADILKLDTSKWTLAE
EEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
QRRIGKALKSLGWVRKRESTGSRGWYYVREEQEPEAALEAVAAGDDDSPL
HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
STLDQIVQQLRNADHPELPSGHPVADGKHHRYGPRKKYWYQLREVVSKGAVIGYTGTFG
CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCC
HFSGDDPGTERFQWNGAPLSEEALAETRRRQEAAERAEAERAARAARMAANRACDQWARA
CCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SEQGASAYLERKQVTAEGVRFDSDGTIFVPMYQYGDEARLVGLQKITPEGAKRFNKGMEK
HHHHHHHHHHHHHHHHCCEEECCCCEEEEEEHHCCCCEEEEEHHHCCHHHHHHHHHCHHH
KGAACLLGEVKADDQLVMIAEGYATGRSVRMATAEAFALCVCFDAGGILSTARYLRDAHP
CCCEEEEECCCCCCCEEEEECCCCCCCEEEEHHHHHEEEEEEECCCCHHHHHHHHHHCCC
NTHVLICADDDWKIEQRMRDWLAEEFDFRGELPFDVAPTRIEAKKTWYMVAAHRRVDDNG
CCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCEEEEEEEECCCCCCC
VAYVEVTYGNDVLPQRRKRFENAGLKRAYEAAAEVDGVSVVYPTFADRGERKLTDFNDLH
EEEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCEEEECCHHCCCCCCCCCCHHHH
VEEGLEAVTRQVQAAILSVLAPASEDVRTAAVDAERPTPAAASAAAGQAEWDGREAENGA
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEECCCCCCCCHHHHCCCCCCCCCCCCCCCC
HTWERDLARSDKGTLLPTLGNVHLILSNHKAWRGVIEQDDFGGRVMKRKAPPFPQGAVGE
HHHHHHHHCCCCCCEEECCCCEEEEEECCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCC
WTDMDDQRCVLWLSQRYGISVRTDIVMNAVLLVADATHFHDVREYLGRLEWDGVPRVRSM
CCCCCCCEEEEEEHHHCCCEEEHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHCC
PSTYLRVADSEYVQLAFMKWMIAAVARVMQPGCKVDNVLILEGKQGARKSTALKVLAGGQ
CCHHEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHEEEEEECCC
WFTDTPIQIGNKDTYAVMAGKWVIELAELDSLNKADSSAVKSFFATAVDRFRNFYGKRAT
EECCCCCEECCCCEEEEEECCCEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
DVPRQCVFAGSVNFDTYLKDESGNRRYWPLRVGGLVDIDGIARVRDQLWAEAVHLYRSGV
CCCCCEEEECCCCCCEEEECCCCCCEEEEEEECCEEECHHHHHHHHHHHHHHHHHHHCCC
VWHVTEQERPLFEIEQAERYEGDVYEDKIAKALEYVSHTTMETILADILKLDTSKWTLAE
EEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
QRRIGKALKSLGWVRKRESTGSRGWYYVREEQEPEAALEAVAAGDDDSPL
HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1818755 [H]