| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is 237812777
Identifier: 237812777
GI number: 237812777
Start: 2464927
End: 2466147
Strand: Direct
Name: 237812777
Synonym: GBP346_A2531
Alternate gene names: NA
Gene position: 2464927-2466147 (Clockwise)
Preceding gene: 237812770
Following gene: 237812778
Centisome position: 60.14
GC content: 77.15
Gene sequence:
>1221_bases ATGGACTCGCTGATCACGGCCGCGGCGCGCGCGCTCGCCGCGGGTGATCCGCTCGGCGCGCTGAACCGCGTCGCGCTGCG CGACGATGCGCCCGCGCTCGCGCTGCGCGGCATCGCGATGGCGCAGCTCGGCGAGTTCGTCCGGGCAAAGGCGCTCGTGC GCCGCGCGGCTCGCGCGTTCAGCCCGAACGAAGCGCTCGCCCGCGCGCGATGCGTCGTCGCCGAAGCCGAGATCGCGCTC GCGTCGCGCGAGCTCGGCTGGCCCGAGAAGGCGCTCGACGCGGCGCGCGCGACGCTCGAGGCGCACGGCGACAGCGTCAA TGCCGCGCATGCGCGATACCTCGCGATCCGCCGCCTGCTGCTGATCGGCCGCGTCGACGAAGCCGCGCGCACGCTCGCCG CGCTCGATGCCGCCACGCACCCGCCCGCGTTGCGGGCCGCGCACGAGCTGATCGTCGCGGGTATCGCGCTGCGGCGCATC GAGACAAAGCCCGCACGCGCGGCCCTCGCCCGCGCCGAGCGCGCGGCGCGCGACGCGGGCATTCCCGCGCTCGCGGCCGA AGTCGAGCGCGCGTTTCGCGTTCTCGACACGCCCGCCGCGCGCCTCGTCGCACGCGGCCAAACGCGCGCGCTGCGGCTCG ACGAAGTCGAGGCCTGGCGCGCATCGGCGTCGCTCGTCGTCGACGCGTGCCGCCGCGTCGTGCACGACGCGCGCGCGACG GTTCCGCTCGCGCGCCGCCCCGTGCTGTTCGCGCTTGCGCGCGCGCTCGGCGAGGCCTGGCCCGGCGACGCGCCGCGCGA GGCGCTCGTCGCCCGCGCGTTTCGCGTGAAGCATGCCGACGAATCGCACCGCGCGCGGCTGCGCGTCGAGATCGGGCGGC TGCGCGCCCTGCTAGGCGAACTGGCCGACATTCGCGCGACGCAGCGGGGGTTCGTGCTGACCCCGCGCCGGGCGCCCGAC GTGGCGGTGCTCGCGCGCCCGCACGAGGACGCGCACGCGGCCGTGCTCGCCCTCCTCGCCGACGGCGAATCGTGGTCGAG TTCCGCGCTTGCGCTCGCGCTCGGCGCGAGCCAGCGCACCGTGCAGCGCTCGCTCGACGCGCTCGCGGCGGCCGGCAACG CGCAATCGTTCGGCCGCGGCCGCGCGCGCCGCTGGACGACCCCGCCCGTGCCCGGATTCGCGACGACCTTGTTACTCCCG GCGCCGCTGCCGGGCGATTAG
Upstream 100 bases:
>100_bases TCGATCGTTCCGCGATCCGGCGCGCGGGGAGTGTGATCGCGTGGTGGTAGATTAGTCGCGGGCTTCGAACGGTGGGAGTG ACAAGTGTGGCGGGATTCCG
Downstream 100 bases:
>100_bases GATGACCCCATCGAGCAACCGGGAGACGGACATGAAGCGATCGAGCGCCGAAATCATCCAGGAATACGGCCCGTTTCCGG GCGTCGACAGCGTGCACGGC
Product: TPR repeat protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 406; Mature: 406
Protein sequence:
>406_residues MDSLITAAARALAAGDPLGALNRVALRDDAPALALRGIAMAQLGEFVRAKALVRRAARAFSPNEALARARCVVAEAEIAL ASRELGWPEKALDAARATLEAHGDSVNAAHARYLAIRRLLLIGRVDEAARTLAALDAATHPPALRAAHELIVAGIALRRI ETKPARAALARAERAARDAGIPALAAEVERAFRVLDTPAARLVARGQTRALRLDEVEAWRASASLVVDACRRVVHDARAT VPLARRPVLFALARALGEAWPGDAPREALVARAFRVKHADESHRARLRVEIGRLRALLGELADIRATQRGFVLTPRRAPD VAVLARPHEDAHAAVLALLADGESWSSSALALALGASQRTVQRSLDALAAAGNAQSFGRGRARRWTTPPVPGFATTLLLP APLPGD
Sequences:
>Translated_406_residues MDSLITAAARALAAGDPLGALNRVALRDDAPALALRGIAMAQLGEFVRAKALVRRAARAFSPNEALARARCVVAEAEIAL ASRELGWPEKALDAARATLEAHGDSVNAAHARYLAIRRLLLIGRVDEAARTLAALDAATHPPALRAAHELIVAGIALRRI ETKPARAALARAERAARDAGIPALAAEVERAFRVLDTPAARLVARGQTRALRLDEVEAWRASASLVVDACRRVVHDARAT VPLARRPVLFALARALGEAWPGDAPREALVARAFRVKHADESHRARLRVEIGRLRALLGELADIRATQRGFVLTPRRAPD VAVLARPHEDAHAAVLALLADGESWSSSALALALGASQRTVQRSLDALAAAGNAQSFGRGRARRWTTPPVPGFATTLLLP APLPGD >Mature_406_residues MDSLITAAARALAAGDPLGALNRVALRDDAPALALRGIAMAQLGEFVRAKALVRRAARAFSPNEALARARCVVAEAEIAL ASRELGWPEKALDAARATLEAHGDSVNAAHARYLAIRRLLLIGRVDEAARTLAALDAATHPPALRAAHELIVAGIALRRI ETKPARAALARAERAARDAGIPALAAEVERAFRVLDTPAARLVARGQTRALRLDEVEAWRASASLVVDACRRVVHDARAT VPLARRPVLFALARALGEAWPGDAPREALVARAFRVKHADESHRARLRVEIGRLRALLGELADIRATQRGFVLTPRRAPD VAVLARPHEDAHAAVLALLADGESWSSSALALALGASQRTVQRSLDALAAAGNAQSFGRGRARRWTTPPVPGFATTLLLP APLPGD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43073; Mature: 43073
Theoretical pI: Translated: 11.80; Mature: 11.80
Prosite motif: PS00639 THIOL_PROTEASE_HIS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDSLITAAARALAAGDPLGALNRVALRDDAPALALRGIAMAQLGEFVRAKALVRRAARAF CCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC SPNEALARARCVVAEAEIALASRELGWPEKALDAARATLEAHGDSVNAAHARYLAIRRLL CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH LIGRVDEAARTLAALDAATHPPALRAAHELIVAGIALRRIETKPARAALARAERAARDAG HHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC IPALAAEVERAFRVLDTPAARLVARGQTRALRLDEVEAWRASASLVVDACRRVVHDARAT CHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCC VPLARRPVLFALARALGEAWPGDAPREALVARAFRVKHADESHRARLRVEIGRLRALLGE CCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH LADIRATQRGFVLTPRRAPDVAVLARPHEDAHAAVLALLADGESWSSSALALALGASQRT HHHHHHHCCCEEECCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCHHH VQRSLDALAAAGNAQSFGRGRARRWTTPPVPGFATTLLLPAPLPGD HHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCHHHHEEECCCCCCC >Mature Secondary Structure MDSLITAAARALAAGDPLGALNRVALRDDAPALALRGIAMAQLGEFVRAKALVRRAARAF CCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC SPNEALARARCVVAEAEIALASRELGWPEKALDAARATLEAHGDSVNAAHARYLAIRRLL CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH LIGRVDEAARTLAALDAATHPPALRAAHELIVAGIALRRIETKPARAALARAERAARDAG HHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC IPALAAEVERAFRVLDTPAARLVARGQTRALRLDEVEAWRASASLVVDACRRVVHDARAT CHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCC VPLARRPVLFALARALGEAWPGDAPREALVARAFRVKHADESHRARLRVEIGRLRALLGE CCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH LADIRATQRGFVLTPRRAPDVAVLARPHEDAHAAVLALLADGESWSSSALALALGASQRT HHHHHHHCCCEEECCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCHHH VQRSLDALAAAGNAQSFGRGRARRWTTPPVPGFATTLLLPAPLPGD HHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCHHHHEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA