| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is ygaY [H]
Identifier: 237812758
GI number: 237812758
Start: 2447432
End: 2448652
Strand: Direct
Name: ygaY [H]
Synonym: GBP346_A2511
Alternate gene names: 237812758
Gene position: 2447432-2448652 (Clockwise)
Preceding gene: 237812750
Following gene: 237812759
Centisome position: 59.71
GC content: 71.09
Gene sequence:
>1221_bases ATGACGCAAACCGCGCTGCCGCGCGGCACGGTTGCGCTGTTCGCCGGTGCGAGCGGCTTGAGCGTGGCGAACGTCTACTA TGCGCAGCCGCTTCTCGACGCGCTTGCCGCGGATTTCACGATCGGCCGCGCGGCGATCGGCGGCGTCGTGACCGCCACGC AAATCGGCTGCGCACTTGCGCTGCTGTTGCTCGTGCCGCTCGGCGACCTCGTCGACCGCCGCCGGCTGATGCTCGTGCAA TCGCTCGCGCTCGCGGCGACGTTGATCGCCGTCGGCTTCGCGTCGACCAGCGCCGTGCTGATCGCCGGCATGCTTGGCAC AGGGCTGCTCGGCACGGCGATGACCCAGGGGCTCGTATCGTACGCGGCGAGCGCCTCGGCCTCGCACGAGCGCGGGCGCG TGGTCGGCGCCGCGCAAGGCGGCGTCGTGATCGGGCTGTTGCTCGCGCGCGTGCTGGCGGGCTTCGTCGGCGACGTGGCG GGATGGCGCAGCGTCTATTTCCTGTCGGCGGCGACGATGCTCGCGCTCGCGGCGCTGCTCGCGCGCAAGCTGCCCGCGCT CGCGCCGGCATCGCCGCGCATCGGCTATCCGCGGCTGATCGCATCGCTGTTCGGCCTGCTGCGCGACGAGCACGTCTTGC AGATCCGCGGGATGCTCGCGATGCTGATGTTCGCCGCGTTCAACATTTTCTGGAGTGCGCTCGCGCTGCCGCTCAGCGCG CCGCCCTATACGCTTTCGCACACCGCGATCGGCGCATTCGGGCTCGTCGGCGCATTGGGCGCGTTCGCCGCCGCGCGCGC CGGGCATTGGGCCGATCGCGGCTTCGGACAACCGACGAGCGCCGCGGCGCTCGCGCTGCTGCTCGCATCGTGGCTGCCGC TCGCCTTCATGCCGATGTCGCTATGGGCGCTCGTGCTCGGCATCGTGCTGCTCGATGTCGGCGGACAGGCGATTCACGTG ACGAATCAGAGCATGATCTTCCGCGCGCGGCCGGATGCGCACAGCCGGCTCATCGCCGCCTACATGCTGTTCTATTCGGT CGGCAGCGGGCTCGGCGCGATCGCGTCGACGGCCGTCTACGCAACGCACGGATGGCGCGGCGTCTGCATGCTGGGCGCGG CCGTCAGCGCGGCGGCGCTCATATTCTGGGCGGCCACGGCGCGGCCGACGCCGAACGAAGCCGCGTCGGCGCATACGGCA AACGGGCGGCTCCGGCGGTGA
Upstream 100 bases:
>100_bases CTTCGCATGGTTTCAATTTGCAACCATCAAGAGAGATATCGCCATGCAAGCTCCGCCAGCGGCGCCTGCCGCCGCCCCGC TCCGAACGGCCGATTCGCCC
Downstream 100 bases:
>100_bases ATCTCGCGATGGCAGGATCGCCCCTATCCAGCGACGATTGCGCCAACCATGCCGTTTATCCGAATCTGGGCCGTCGAGCA TTGCCTCGCATCGGGCATCG
Product: major facilitator family transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 406; Mature: 405
Protein sequence:
>406_residues MTQTALPRGTVALFAGASGLSVANVYYAQPLLDALAADFTIGRAAIGGVVTATQIGCALALLLLVPLGDLVDRRRLMLVQ SLALAATLIAVGFASTSAVLIAGMLGTGLLGTAMTQGLVSYAASASASHERGRVVGAAQGGVVIGLLLARVLAGFVGDVA GWRSVYFLSAATMLALAALLARKLPALAPASPRIGYPRLIASLFGLLRDEHVLQIRGMLAMLMFAAFNIFWSALALPLSA PPYTLSHTAIGAFGLVGALGAFAAARAGHWADRGFGQPTSAAALALLLASWLPLAFMPMSLWALVLGIVLLDVGGQAIHV TNQSMIFRARPDAHSRLIAAYMLFYSVGSGLGAIASTAVYATHGWRGVCMLGAAVSAAALIFWAATARPTPNEAASAHTA NGRLRR
Sequences:
>Translated_406_residues MTQTALPRGTVALFAGASGLSVANVYYAQPLLDALAADFTIGRAAIGGVVTATQIGCALALLLLVPLGDLVDRRRLMLVQ SLALAATLIAVGFASTSAVLIAGMLGTGLLGTAMTQGLVSYAASASASHERGRVVGAAQGGVVIGLLLARVLAGFVGDVA GWRSVYFLSAATMLALAALLARKLPALAPASPRIGYPRLIASLFGLLRDEHVLQIRGMLAMLMFAAFNIFWSALALPLSA PPYTLSHTAIGAFGLVGALGAFAAARAGHWADRGFGQPTSAAALALLLASWLPLAFMPMSLWALVLGIVLLDVGGQAIHV TNQSMIFRARPDAHSRLIAAYMLFYSVGSGLGAIASTAVYATHGWRGVCMLGAAVSAAALIFWAATARPTPNEAASAHTA NGRLRR >Mature_405_residues TQTALPRGTVALFAGASGLSVANVYYAQPLLDALAADFTIGRAAIGGVVTATQIGCALALLLLVPLGDLVDRRRLMLVQS LALAATLIAVGFASTSAVLIAGMLGTGLLGTAMTQGLVSYAASASASHERGRVVGAAQGGVVIGLLLARVLAGFVGDVAG WRSVYFLSAATMLALAALLARKLPALAPASPRIGYPRLIASLFGLLRDEHVLQIRGMLAMLMFAAFNIFWSALALPLSAP PYTLSHTAIGAFGLVGALGAFAAARAGHWADRGFGQPTSAAALALLLASWLPLAFMPMSLWALVLGIVLLDVGGQAIHVT NQSMIFRARPDAHSRLIAAYMLFYSVGSGLGAIASTAVYATHGWRGVCMLGAAVSAAALIFWAATARPTPNEAASAHTAN GRLRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 41655; Mature: 41523
Theoretical pI: Translated: 11.15; Mature: 11.15
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQTALPRGTVALFAGASGLSVANVYYAQPLLDALAADFTIGRAAIGGVVTATQIGCALA CCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLLLVPLGDLVDRRRLMLVQSLALAATLIAVGFASTSAVLIAGMLGTGLLGTAMTQGLVS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YAASASASHERGRVVGAAQGGVVIGLLLARVLAGFVGDVAGWRSVYFLSAATMLALAALL HHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ARKLPALAPASPRIGYPRLIASLFGLLRDEHVLQIRGMLAMLMFAAFNIFWSALALPLSA HHHCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC PPYTLSHTAIGAFGLVGALGAFAAARAGHWADRGFGQPTSAAALALLLASWLPLAFMPMS CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH LWALVLGIVLLDVGGQAIHVTNQSMIFRARPDAHSRLIAAYMLFYSVGSGLGAIASTAVY HHHHHHHHHHHHCCCCEEEEECCCEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH ATHGWRGVCMLGAAVSAAALIFWAATARPTPNEAASAHTANGRLRR HCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCC >Mature Secondary Structure TQTALPRGTVALFAGASGLSVANVYYAQPLLDALAADFTIGRAAIGGVVTATQIGCALA CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLLLVPLGDLVDRRRLMLVQSLALAATLIAVGFASTSAVLIAGMLGTGLLGTAMTQGLVS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YAASASASHERGRVVGAAQGGVVIGLLLARVLAGFVGDVAGWRSVYFLSAATMLALAALL HHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ARKLPALAPASPRIGYPRLIASLFGLLRDEHVLQIRGMLAMLMFAAFNIFWSALALPLSA HHHCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC PPYTLSHTAIGAFGLVGALGAFAAARAGHWADRGFGQPTSAAALALLLASWLPLAFMPMS CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH LWALVLGIVLLDVGGQAIHVTNQSMIFRARPDAHSRLIAAYMLFYSVGSGLGAIASTAVY HHHHHHHHHHHHCCCCEEEEECCCEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH ATHGWRGVCMLGAAVSAAALIFWAATARPTPNEAASAHTANGRLRR HCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]