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The map label for this gene is ydhO [H]

Identifier: 237812604

GI number: 237812604

Start: 2317827

End: 2319035

Strand: Direct

Name: ydhO [H]

Synonym: GBP346_A2354

Alternate gene names: 237812604

Gene position: 2317827-2319035 (Clockwise)

Preceding gene: 237812603

Following gene: 237812605

Centisome position: 56.55

GC content: 74.11

Gene sequence:

>1209_bases
ATGTTGCGTCTTTCGCTGTCCGTTCTCGTGATTTCGCTGCTCGCGGCCTGCTCGAGCGTGCCGCCCAAGTCGGCGCGCTC
GTCGTCCGGCATGGCGATTACCACGCCGCGCGCGTACGCGCCGCCGCGCGGCTTTCCGAATTTCGTCGACCATAGCGTCG
GCCGCGAGGAAATCTCGATCCAGGCGATGAGCCTCGTCGGCGTGCCGTATCGTTGGGGCGGCAACACGCCCGACAGCGGC
TTCGACTGCAGTGGGCTCGTGCGCTATGTCGTCGATCGCGCGGCGAGCGTGAATCTGCCCCGCACGACCGCCGACATGAG
CTCGATCGGCGAATCGATCGAGCCCGACGGCATCGCGCCGGGCGATCTGATCTTCTTCAATACGTCGGGGCGGCCGCATT
CGCACGTCGGCATCTACGTCGGCAAGCTGCGCTTCGTGAACGCGCCGTCGACGGGCGGCACCGTGCGGCTCGACTATCTA
ACGAATCCGTATTGGGCGAAGCGCTTCGACGGCATCCGGCGCGTCGCGGCGCCGAAGGCGAAGCCGGCGCCGTTCGATGC
GCCGACCTATCAGGCGAGCCGGCCGCCGGAACCCGCGCCGCGCGTGAGCCCGGCAGCCGCGGCGCCGGCCTATGCGGCAG
TCAATGCGCCGGCGGCGTCCGCCGCACGCGCGGCAGCGCCCTCCGCGCCCGGCTATGCGGCGAACTCGGCGACGCCGGCC
GCGGCACGCGCCGCAGCACCGCCGCCATCGTCCGAATATGCCGCCCACTCCGCCGCTGCGATGGCCGCGGCGTCGGCCGC
GCCGCTACCCACCGCCGTGCCGGCTGCGGCAACCGCCGCAACCGCCGCCGATCCGTACGAGCCGCCGCCGTCCGCGATGT
CCGCCGCGCGCCGGCAAGCGCAGGCTGCCGGCGCGCGTTCGCCCGTGCTCGCGGCCGGCAACCCGGGCGGCGCGGTGCCG
CCGGCCGCGCCGCCCGCCGGCGGTCCGACGAGCATGGCCGGCGCATCGGCGGCCGATCCGATCGACGCCGCCGCGGACGC
GTTCGAGCCGCCGCCGCCCACCGCGCGCGCGGCCGCCCGTCAGGCGCAACTCGCCGCGCCCGGCAACGTGCAGGTCCTGC
GCGCGTCGACAGCCGGCAGCGCCGCAAGCGCCGCCGCAACCGGCTCGAACGACGACCCGATCGCCCGCTTCGCGAACGGC
GGTTATTGA

Upstream 100 bases:

>100_bases
CATTTCTCAGGAATTCTTGCGAAAGCCCCGCTGGACGCACTACTATCGCGATTAACCGTTGTCATACGATTGGCGAGCGC
AGCGCGTTCGCCCGCCTCTC

Downstream 100 bases:

>100_bases
GGCTATCGGAGAAGCGGCAAGCGCCGACACGCCGAAGACGCCGTCCGGACGCGATGGGCCGCGCGATGCACCGCCGCGCG
AGTGAAACGCGAAGGGCAAG

Product: lipoprotein, NLP/P60 family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 402

Protein sequence:

>402_residues
MLRLSLSVLVISLLAACSSVPPKSARSSSGMAITTPRAYAPPRGFPNFVDHSVGREEISIQAMSLVGVPYRWGGNTPDSG
FDCSGLVRYVVDRAASVNLPRTTADMSSIGESIEPDGIAPGDLIFFNTSGRPHSHVGIYVGKLRFVNAPSTGGTVRLDYL
TNPYWAKRFDGIRRVAAPKAKPAPFDAPTYQASRPPEPAPRVSPAAAAPAYAAVNAPAASAARAAAPSAPGYAANSATPA
AARAAAPPPSSEYAAHSAAAMAAASAAPLPTAVPAAATAATAADPYEPPPSAMSAARRQAQAAGARSPVLAAGNPGGAVP
PAAPPAGGPTSMAGASAADPIDAAADAFEPPPPTARAAARQAQLAAPGNVQVLRASTAGSAASAAATGSNDDPIARFANG
GY

Sequences:

>Translated_402_residues
MLRLSLSVLVISLLAACSSVPPKSARSSSGMAITTPRAYAPPRGFPNFVDHSVGREEISIQAMSLVGVPYRWGGNTPDSG
FDCSGLVRYVVDRAASVNLPRTTADMSSIGESIEPDGIAPGDLIFFNTSGRPHSHVGIYVGKLRFVNAPSTGGTVRLDYL
TNPYWAKRFDGIRRVAAPKAKPAPFDAPTYQASRPPEPAPRVSPAAAAPAYAAVNAPAASAARAAAPSAPGYAANSATPA
AARAAAPPPSSEYAAHSAAAMAAASAAPLPTAVPAAATAATAADPYEPPPSAMSAARRQAQAAGARSPVLAAGNPGGAVP
PAAPPAGGPTSMAGASAADPIDAAADAFEPPPPTARAAARQAQLAAPGNVQVLRASTAGSAASAAATGSNDDPIARFANG
GY
>Mature_402_residues
MLRLSLSVLVISLLAACSSVPPKSARSSSGMAITTPRAYAPPRGFPNFVDHSVGREEISIQAMSLVGVPYRWGGNTPDSG
FDCSGLVRYVVDRAASVNLPRTTADMSSIGESIEPDGIAPGDLIFFNTSGRPHSHVGIYVGKLRFVNAPSTGGTVRLDYL
TNPYWAKRFDGIRRVAAPKAKPAPFDAPTYQASRPPEPAPRVSPAAAAPAYAAVNAPAASAARAAAPSAPGYAANSATPA
AARAAAPPPSSEYAAHSAAAMAAASAAPLPTAVPAAATAATAADPYEPPPSAMSAARRQAQAAGARSPVLAAGNPGGAVP
PAAPPAGGPTSMAGASAADPIDAAADAFEPPPPTARAAARQAQLAAPGNVQVLRASTAGSAASAAATGSNDDPIARFANG
GY

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=122, Percent_Identity=41.8032786885246, Blast_Score=121, Evalue=8e-29,
Organism=Escherichia coli, GI1786421, Length=134, Percent_Identity=36.5671641791045, Blast_Score=105, Evalue=6e-24,
Organism=Escherichia coli, GI1788501, Length=135, Percent_Identity=35.5555555555556, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1788001, Length=119, Percent_Identity=42.0168067226891, Blast_Score=90, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 39983; Mature: 39983

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRLSLSVLVISLLAACSSVPPKSARSSSGMAITTPRAYAPPRGFPNFVDHSVGREEISI
CEEEHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHCCHHHHEE
QAMSLVGVPYRWGGNTPDSGFDCSGLVRYVVDRAASVNLPRTTADMSSIGESIEPDGIAP
EEEHEECCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCC
GDLIFFNTSGRPHSHVGIYVGKLRFVNAPSTGGTVRLDYLTNPYWAKRFDGIRRVAAPKA
CCEEEECCCCCCCCEEEEEEEEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCC
KPAPFDAPTYQASRPPEPAPRVSPAAAAPAYAAVNAPAASAARAAAPSAPGYAANSATPA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHHHCCCCCCCCCCCCCCCH
AARAAAPPPSSEYAAHSAAAMAAASAAPLPTAVPAAATAATAADPYEPPPSAMSAARRQA
HHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHH
QAAGARSPVLAAGNPGGAVPPAAPPAGGPTSMAGASAADPIDAAADAFEPPPPTARAAAR
HHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHH
QAQLAAPGNVQVLRASTAGSAASAAATGSNDDPIARFANGGY
HHHHCCCCCEEEEEECCCCCCHHHHCCCCCCCCHHHHCCCCC
>Mature Secondary Structure
MLRLSLSVLVISLLAACSSVPPKSARSSSGMAITTPRAYAPPRGFPNFVDHSVGREEISI
CEEEHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHCCHHHHEE
QAMSLVGVPYRWGGNTPDSGFDCSGLVRYVVDRAASVNLPRTTADMSSIGESIEPDGIAP
EEEHEECCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCC
GDLIFFNTSGRPHSHVGIYVGKLRFVNAPSTGGTVRLDYLTNPYWAKRFDGIRRVAAPKA
CCEEEECCCCCCCCEEEEEEEEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCC
KPAPFDAPTYQASRPPEPAPRVSPAAAAPAYAAVNAPAASAARAAAPSAPGYAANSATPA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHHHCCCCCCCCCCCCCCCH
AARAAAPPPSSEYAAHSAAAMAAASAAPLPTAVPAAATAATAADPYEPPPSAMSAARRQA
HHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHH
QAAGARSPVLAAGNPGGAVPPAAPPAGGPTSMAGASAADPIDAAADAFEPPPPTARAAAR
HHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHH
QAQLAAPGNVQVLRASTAGSAASAAATGSNDDPIARFANGGY
HHHHCCCCCEEEEEECCCCCCHHHHCCCCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]