BacMap

Definition	Burkholderia pseudomallei MSHR346 chromosome I, complete genome.
Accession	NC_012695
Length	4,098,576

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The map label for this gene is ybbL [H]

Identifier: 237812511

GI number: 237812511

Start: 2226065

End: 2226895

Strand: Direct

Name: ybbL [H]

Synonym: GBP346_A2260

Alternate gene names: 237812511

Gene position: 2226065-2226895 (Clockwise)

Preceding gene: 237812508

Following gene: 237812512

Centisome position: 54.31

GC content: 71.72

Gene sequence:

>831_bases
ATGCCAGATTCCGTCGTTGTTCTTCCTGAATCGGCCGTGCCGCGCAGCGTGCGCGACGCTGCCGCTGGCAGTTATTATGG
CGCACGATGCTGCGCCACCCGCCCCCATTTACCGTTTTTTGCGTTTTTTGCATTTATGACAGCCGATGTCCTGATCGAAG
CCCGGCAACTCGCCCGCCGCGACGCCGCCAGCGGTAAAACGCTCCTGGCCCCGAGCGATTTCGCGCTCGCGGCGGGCGAG
CGGATCGCGCTCACCGGCCCGTCGGGCTCGGGCAAGAGCGTGTTTCTGCGGGCCCTCGCGCTTCTCGATCCGATCGACGG
CGGCGAGCTGCTCTGGCGCGGCACACGGGTGCCGCGCCCGGCCATTCCGCGCTATCGGCGCAGCGTCGCCTATGTTCGCC
AGCGCCCCGCCACCGCCGAGGGCACCGTGGAGGACCTGCTGCGCTACCCCTATTCGCTCGCCGTCTATCGCGACGCGCGC
TTCGACGCCGCGCGCGTCGCGCGCCTCGCCGCGCAGGCGGGCCGCGGCGACGACTTCCTGCGCAAGGCGGCGAGCGAGCT
GTCCGGCGGCGAGGCGCAGATCGCCGCGCTGCTGCGCGTGCTGCAACTCGACCCCGACGTGCTGCTGCTCGACGAGCCGA
CGTCCGCCCTCGATCCCGATTCGACCCGCGCGATCGAAGCGCTCGTGGCCGCCTGGTTCGACGCGGCGCCCGCCGCGCGC
GCGTATCTGTGGATTTCGCACGATCCGGCGCAGGCGGCACGCGTCGGCCGCCGGCGCCTGACGATGCGCGCCGGCGTGCT
CGGCGACGCCGCGACGCAGGACGCGCGATGA

Upstream 100 bases:

>100_bases
CCAGTCGAACGTGAAGATGAACACGCCGACCGCCGCGGTCAAGACCGCGAAGATGCCGACGATCCACGCCGCCGTTTTGC
CAAGAGTACGGGTGAGCGCC

Downstream 100 bases:

>100_bases
ACACGCCGCTGCAAGACCTGAGTCTCGTCGACGTCGGGATCGCGGCGGCGCTCGTCGCGATCAACGGCGCGATTTCGGTC
GCGCTATCGCTCGGCCTCGG

Product: ABC transporter, ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 275

Protein sequence:

>276_residues
MPDSVVVLPESAVPRSVRDAAAGSYYGARCCATRPHLPFFAFFAFMTADVLIEARQLARRDAASGKTLLAPSDFALAAGE
RIALTGPSGSGKSVFLRALALLDPIDGGELLWRGTRVPRPAIPRYRRSVAYVRQRPATAEGTVEDLLRYPYSLAVYRDAR
FDAARVARLAAQAGRGDDFLRKAASELSGGEAQIAALLRVLQLDPDVLLLDEPTSALDPDSTRAIEALVAAWFDAAPAAR
AYLWISHDPAQAARVGRRRLTMRAGVLGDAATQDAR

Sequences:

>Translated_276_residues
MPDSVVVLPESAVPRSVRDAAAGSYYGARCCATRPHLPFFAFFAFMTADVLIEARQLARRDAASGKTLLAPSDFALAAGE
RIALTGPSGSGKSVFLRALALLDPIDGGELLWRGTRVPRPAIPRYRRSVAYVRQRPATAEGTVEDLLRYPYSLAVYRDAR
FDAARVARLAAQAGRGDDFLRKAASELSGGEAQIAALLRVLQLDPDVLLLDEPTSALDPDSTRAIEALVAAWFDAAPAAR
AYLWISHDPAQAARVGRRRLTMRAGVLGDAATQDAR
>Mature_275_residues
PDSVVVLPESAVPRSVRDAAAGSYYGARCCATRPHLPFFAFFAFMTADVLIEARQLARRDAASGKTLLAPSDFALAAGER
IALTGPSGSGKSVFLRALALLDPIDGGELLWRGTRVPRPAIPRYRRSVAYVRQRPATAEGTVEDLLRYPYSLAVYRDARF
DAARVARLAAQAGRGDDFLRKAASELSGGEAQIAALLRVLQLDPDVLLLDEPTSALDPDSTRAIEALVAAWFDAAPAARA
YLWISHDPAQAARVGRRRLTMRAGVLGDAATQDAR

Specific function: Unknown

COG id: COG4619

COG function: function code R; ABC-type uncharacterized transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI9955968, Length=164, Percent_Identity=32.9268292682927, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI9955966, Length=164, Percent_Identity=32.9268292682927, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI45243524, Length=164, Percent_Identity=32.9268292682927, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI9665248, Length=161, Percent_Identity=36.0248447204969, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI255708477, Length=211, Percent_Identity=26.5402843601896, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI9955963, Length=180, Percent_Identity=32.7777777777778, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI148612844, Length=175, Percent_Identity=32, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI42490749, Length=193, Percent_Identity=29.0155440414508, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI9961250, Length=183, Percent_Identity=28.4153005464481, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI4505771, Length=183, Percent_Identity=28.4153005464481, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI9961252, Length=183, Percent_Identity=28.4153005464481, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI1786698, Length=183, Percent_Identity=37.7049180327869, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1787029, Length=222, Percent_Identity=29.7297297297297, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1788225, Length=228, Percent_Identity=29.3859649122807, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787143, Length=179, Percent_Identity=34.0782122905028, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI145693107, Length=199, Percent_Identity=33.1658291457286, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786345, Length=205, Percent_Identity=32.6829268292683, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1789962, Length=207, Percent_Identity=28.9855072463768, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1789672, Length=213, Percent_Identity=27.6995305164319, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1789891, Length=206, Percent_Identity=29.6116504854369, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1790162, Length=228, Percent_Identity=27.6315789473684, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87081709, Length=228, Percent_Identity=28.5087719298246, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787370, Length=216, Percent_Identity=26.8518518518519, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786872, Length=199, Percent_Identity=28.643216080402, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787089, Length=205, Percent_Identity=33.1707317073171, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1789032, Length=212, Percent_Identity=32.0754716981132, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788761, Length=227, Percent_Identity=27.3127753303965, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87082267, Length=204, Percent_Identity=30.3921568627451, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786253, Length=203, Percent_Identity=31.5270935960591, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1787792, Length=212, Percent_Identity=29.2452830188679, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1788506, Length=202, Percent_Identity=29.7029702970297, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788450, Length=195, Percent_Identity=28.2051282051282, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787500, Length=208, Percent_Identity=27.4038461538462, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1786398, Length=186, Percent_Identity=31.1827956989247, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787113, Length=189, Percent_Identity=36.5079365079365, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17567265, Length=179, Percent_Identity=34.0782122905028, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17565938, Length=208, Percent_Identity=29.3269230769231, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17543740, Length=179, Percent_Identity=28.4916201117318, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI115535101, Length=178, Percent_Identity=34.8314606741573, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17567269, Length=180, Percent_Identity=33.8888888888889, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI193202349, Length=177, Percent_Identity=33.3333333333333, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI193211015, Length=206, Percent_Identity=30.5825242718447, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI71996809, Length=206, Percent_Identity=30.5825242718447, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI193211017, Length=206, Percent_Identity=30.5825242718447, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI212646699, Length=167, Percent_Identity=31.7365269461078, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17533971, Length=177, Percent_Identity=30.5084745762712, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI25146777, Length=178, Percent_Identity=31.4606741573034, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17541710, Length=181, Percent_Identity=31.4917127071823, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17569143, Length=211, Percent_Identity=29.3838862559242, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17558664, Length=207, Percent_Identity=28.5024154589372, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71992290, Length=166, Percent_Identity=28.9156626506024, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI193209708, Length=180, Percent_Identity=35, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17569145, Length=184, Percent_Identity=30.9782608695652, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6323217, Length=160, Percent_Identity=33.125, Blast_Score=72, Evalue=9e-14,
Organism=Saccharomyces cerevisiae, GI6322640, Length=178, Percent_Identity=29.2134831460674, Blast_Score=67, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6324985, Length=162, Percent_Identity=29.6296296296296, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24659289, Length=175, Percent_Identity=36.5714285714286, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI21357907, Length=169, Percent_Identity=31.9526627218935, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI85726357, Length=211, Percent_Identity=28.436018957346, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI281363262, Length=218, Percent_Identity=29.3577981651376, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24653245, Length=218, Percent_Identity=29.3577981651376, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI17136662, Length=181, Percent_Identity=32.0441988950276, Blast_Score=68, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 29688; Mature: 29557

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDSVVVLPESAVPRSVRDAAAGSYYGARCCATRPHLPFFAFFAFMTADVLIEARQLARR
CCCCEEEECCCCCCHHHHHHHCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
DAASGKTLLAPSDFALAAGERIALTGPSGSGKSVFLRALALLDPIDGGELLWRGTRVPRP
HHCCCCEEECCCCCCEECCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCC
AIPRYRRSVAYVRQRPATAEGTVEDLLRYPYSLAVYRDARFDAARVARLAAQAGRGDDFL
CCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCHHHH
RKAASELSGGEAQIAALLRVLQLDPDVLLLDEPTSALDPDSTRAIEALVAAWFDAAPAAR
HHHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCE
AYLWISHDPAQAARVGRRRLTMRAGVLGDAATQDAR
EEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
PDSVVVLPESAVPRSVRDAAAGSYYGARCCATRPHLPFFAFFAFMTADVLIEARQLARR
CCCEEEECCCCCCHHHHHHHCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
DAASGKTLLAPSDFALAAGERIALTGPSGSGKSVFLRALALLDPIDGGELLWRGTRVPRP
HHCCCCEEECCCCCCEECCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCC
AIPRYRRSVAYVRQRPATAEGTVEDLLRYPYSLAVYRDARFDAARVARLAAQAGRGDDFL
CCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCHHHH
RKAASELSGGEAQIAALLRVLQLDPDVLLLDEPTSALDPDSTRAIEALVAAWFDAAPAAR
HHHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCE
AYLWISHDPAQAARVGRRRLTMRAGVLGDAATQDAR
EEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]