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The map label for this gene is ompW [C]

Identifier: 237812505

GI number: 237812505

Start: 2216883

End: 2217467

Strand: Reverse

Name: ompW [C]

Synonym: GBP346_A2254

Alternate gene names: 237812505

Gene position: 2217467-2216883 (Counterclockwise)

Preceding gene: 237812506

Following gene: 237812501

Centisome position: 54.1

GC content: 62.91

Gene sequence:

>585_bases
ATGATTCCGTCGCTGTCGCATGCGGCTTCGCCCGGAGAGGGCATCAATCAAGGCGACATCATCGCGCGCGTTCGCGGGAT
CAGCATCATGCCGGACGAGCGCACGAGCAATACGTTGTCGGCGCTGAACGTGGGCGTGAACAATGCGATCGTCCCCGAGC
TCGATTTCACGTACATGATTCGCGACTACCTGGGCGTCGAGCTGATTCTCGGCACGTCGCGGCATCAGATCACGTCGTCG
CTCGGCGATCTCGGCGGCGTCGGCGTGCTGCCGCCGACGCTGCTGTTGCAGTACCACTTCAACCATGCCGGCAAGGTGCG
TCCGTATGTCGGCGCGGGCATCAACTACACGCTGTTCTACAACAACGGGCTGCACGCGGGCGGCGAGGGGATCGGGATCA
ACAACCACAGCTTCGGTCCCGCGCTGCAGTTCGGCGTCGACGTGCAAGTGACGAAGAAGGTGTTCGTCAACGTCGACGTG
AAGAAGATCTGGATGCACACCGATGCGACGCTCGGCGGCCAGCCGCTCGGCCGGCTGAACATCGATCCGCTCGTCGTGGG
CGTCGGCGTCGGGATGAAGTTCTAG

Upstream 100 bases:

>100_bases
ATCCCCCGAGAATGAAGCCTGTTCTTAGGGGGTCCTTAACATGCGTCGTCAAACAATTCGTACTTGCACCACCGCCATCG
CTTGCGCAGCCGGTCTTGCG

Downstream 100 bases:

>100_bases
GAATCGACAGAATCGAAAAGTGTTGGGGTTGGCGGCACGGCTTCATGCGTGCCGTCCTTTTTTTTAATGCGTTCGTTTCG
GTATGCTGATCGAATGCGTG

Product: outer membrane protein, OmpW family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MIPSLSHAASPGEGINQGDIIARVRGISIMPDERTSNTLSALNVGVNNAIVPELDFTYMIRDYLGVELILGTSRHQITSS
LGDLGGVGVLPPTLLLQYHFNHAGKVRPYVGAGINYTLFYNNGLHAGGEGIGINNHSFGPALQFGVDVQVTKKVFVNVDV
KKIWMHTDATLGGQPLGRLNIDPLVVGVGVGMKF

Sequences:

>Translated_194_residues
MIPSLSHAASPGEGINQGDIIARVRGISIMPDERTSNTLSALNVGVNNAIVPELDFTYMIRDYLGVELILGTSRHQITSS
LGDLGGVGVLPPTLLLQYHFNHAGKVRPYVGAGINYTLFYNNGLHAGGEGIGINNHSFGPALQFGVDVQVTKKVFVNVDV
KKIWMHTDATLGGQPLGRLNIDPLVVGVGVGMKF
>Mature_194_residues
MIPSLSHAASPGEGINQGDIIARVRGISIMPDERTSNTLSALNVGVNNAIVPELDFTYMIRDYLGVELILGTSRHQITSS
LGDLGGVGVLPPTLLLQYHFNHAGKVRPYVGAGINYTLFYNNGLHAGGEGIGINNHSFGPALQFGVDVQVTKKVFVNVDV
KKIWMHTDATLGGQPLGRLNIDPLVVGVGVGMKF

Specific function: Acts As A Receptor For Colicin S4. [C]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=188, Percent_Identity=37.7659574468085, Blast_Score=105, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 20673; Mature: 20673

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPSLSHAASPGEGINQGDIIARVRGISIMPDERTSNTLSALNVGVNNAIVPELDFTYMI
CCCCCCCCCCCCCCCCCCCEEEEEECCEECCCCCCCCCCEEEECCCCCEECCCCCHHHHH
RDYLGVELILGTSRHQITSSLGDLGGVGVLPPTLLLQYHFNHAGKVRPYVGAGINYTLFY
HHHCCEEEEECCCHHHHHHHHHCCCCCCCCCHHHEEEEECCCCCCCCEEECCCEEEEEEE
NNGLHAGGEGIGINNHSFGPALQFGVDVQVTKKVFVNVDVKKIWMHTDATLGGQPLGRLN
CCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEEEEECCEEEEEEECCCCCCCCCCCCCC
IDPLVVGVGVGMKF
CCEEEEEECCCCCC
>Mature Secondary Structure
MIPSLSHAASPGEGINQGDIIARVRGISIMPDERTSNTLSALNVGVNNAIVPELDFTYMI
CCCCCCCCCCCCCCCCCCCEEEEEECCEECCCCCCCCCCEEEECCCCCEECCCCCHHHHH
RDYLGVELILGTSRHQITSSLGDLGGVGVLPPTLLLQYHFNHAGKVRPYVGAGINYTLFY
HHHCCEEEEECCCHHHHHHHHHCCCCCCCCCHHHEEEEECCCCCCCCEEECCCEEEEEEE
NNGLHAGGEGIGINNHSFGPALQFGVDVQVTKKVFVNVDVKKIWMHTDATLGGQPLGRLN
CCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEEEEECCEEEEEEECCCCCCCCCCCCCC
IDPLVVGVGVGMKF
CCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]