| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is fimD [H]
Identifier: 237812410
GI number: 237812410
Start: 2130449
End: 2133001
Strand: Reverse
Name: fimD [H]
Synonym: GBP346_A2158
Alternate gene names: 237812410
Gene position: 2133001-2130449 (Counterclockwise)
Preceding gene: 237812411
Following gene: 237812409
Centisome position: 52.04
GC content: 67.1
Gene sequence:
>2553_bases ATGATTCGGCATCGTGTCGCCGATGTCGGCTTCTCGCGCATACGAGTGACCATGCTGGCCGCCGCGCTCACGGCGCTTTC GGCGACCGCTCGCGGCCAACAGGCGCTGGAGTTCGATCCTGCCTTTCTCGAGCTGGGCGGCGGCCAGGGCGGAGCCGATC TTTCCGTGTACGCGACATCGAACCGCGTGCTGCCCGGCGTCTATCCGGTATCGGTCTTCGTCAACGGCGAGGCGATCGAG CGGCGCGACATCACGTTCGTGTCCGAAAGCGCGCGCGACGGGCGGGAAGACGCGATCCCCTGCCTGAGCGCCCGGATGTT CGACGAATGGGGCGTCGACATCGCCGCGTTTGCGAAGCTCGCGCAAGCCGGCGAAGACGCATGCGTCGACATCGCCGACA GCGTGCCCCACGCGCGAACCGAGTTCGACAGCCATCAACTGCGGTTGAACGTAACGGTGCCCCAGGCCGCGTTGAAGCGG CGCGCGCGCGGCGCGGTGGACCCGGCGCGCTGGGATCAGGGTATCGACGCCGCGCTGCTCGACTATCAACTGAGCGCCGC CCAGTACGCCGGCGGCAATTTCGCGTCCGCCCGTTCGCGCACGACGTTGTATGCGGGGTTGCGCGGCGCCGTCAATCTGG GCGCATGGCGGCTGTCGCACACGTCGTCGTTTCTGCGCGGGCTCGACGGCCGGAATCGCTTTCAGATCGTCAATACGTTC GTCCAGCGCGACATCGCCGGCTGGAACAGCCGCCTCACCGCCGGGGAAGGCACCACGCCCGCGAACATTTTCGACGGATT TCAGTTTCTCGGCGTGCAACTCAATACCGACGAGACCATGCTGCCCGACAGTCTGCAGGGCTACGCGCCCACCGTGCACG GCGTCGCGCAGACCAATGCGCAGGTGACGATCAGGCAGAATGGTTTCGTCATCTACAGCACCTACGTGCCGCCGGGGCCG TTTACGATCGACGATCTTTATCCGACGTCGTCGTCGGGCAATCTGGAAGTGACGATTACCGAGGCCGACGGGCACGTCAC GACATTCACGCAACCGTACTCCGCGGTGCCGATGTTGCTGCGCGACGGTTCGTGGCGGTATAACGTCACGGCGGGCCAAT ACCGTGACGGCATTTCAGGCTCGCATCCGAGCTTTGCGATGGCGACGCTCGCGCGAGGGCTGGCGGGCGAATTCTCGTTG TACGGCGGGTTCATCGGGGCCGGCATGTATCAATCGGTGCTCGTCGGAATCGGCAAGAACCTGGGCAGCATCGGCGCGGT ATCGCTCGACGTGACGCACGCGCGCAGCGCGGTCGACCTGGCCGACAGCAGCACGGTGTCGGGGCATGCCTTTCGCGTGC TTTACGCGAAGGCCGTGGGCAGTTGGGGCACCGATTTCCGGTTGCTCGCATACCGCTACTCCACCGCCGGCTATCGAAGC TTCGCCGATGCGGTGCAACTGCGCGACGGCAGCGAGCCCGCGGCGCTGGGCGCAAAGCGCCAGCGCCTCGAGGGCACGGT GAACCAGCGTCTCGGCCGCCTCGGCTCGATGTACGCGACCGTGGCCGTGCAGACCTACTGGGGCAGCGCGGCGCGCAGCA CCGTGTATCAGCTCGGGCACAGCGGGAATTGGGGGCGCGCCAGCTACGGACTCTATGCGGCCTATAGCAAAGGAAGCGGC GTGCCGTCGAGCTGGAACGTCTCGTTGTCGCTATCGATGCCGCTGGAAGTGTTTTTCGGCGGCGCGCGCGTGCGTGCGCC GGCGGGCGGCAGCGCGAATGTCTCGTACTTCGCCAGCCGGAACAACGAGAACCACGTCAATCAGCAGATGACGGCCAGCG GCAGCAGCAGCGAGCAGCGCCTGAACTACAGCGTGGGCGTCGCGCATTCCAGCGAGTCGGACGTGAGCGGCTCGGTGTCG ACCAGCTATCTCGCGCCGTTCGGCCGCTACGACGCGTCGATCGGCAGCGGCCGCGGGTACACGCAGGCCGCGTTCACCGC TGCCGGCGGCATGCTGTGGCATGGCACCGGAGTGTTGTTCACGCAACCGCTCGGCGAGACCGTGGCGGTCGTGGACGTGC CGAACGTGCGGGGCGTGCGTTTCGAAATGCACCCGGGCGTGAGCACGGATCGGGCGGGCGAAGCGGTGATTCCGCGGCTG AACCCCTATCGGGTCAACCGCATCGCCGTCGACCAGCGCCGGATGCCGCAGGACGTGGAGATCCGCAACCCGGTGAGCGA AGTCGTGCCCACCCGGGCGGCGGTCGTTCAAACGCACTTCGATTCCGTCGTCGGGCTTCGCGCGCTGTTCACGTTGACGC GCGCGGACGGCTCGTTTCCGCCGCAGGGCGCGACGGCCGAGAACGACGAAGGACAGGTGCTCGGCGTCGTCGGGATGGAC GGCGAGACGTTCGTGGCGGGCTTGCCCGCCGCCGAAGGGCATTTCGTCGTTCGCTGGGGGGCGGCGCGACAGAATCGCTG CCGCGTGAATTACGTGCTGCCCGGAAAGGCGGCGAACGGCGCGTACACGGCCGTGGAGGCGACATGCGATTGA
Upstream 100 bases:
>100_bases CAGCTATACCACCATCAACGATTACGGCGCCGTCACGCCGGCGACGGAAGTGACGGCCCAACCGGCCGGTACGCCCGAGG CCGCGCCGCAGTAGGGCGCG
Downstream 100 bases:
>100_bases AACGCGAACGGCGTGCGCGGCGCCCCCGCCTGCATGCGGCGGCAGGCGGCCTGTGGCTTGTCGTTGCCGCGCTGCCGCCC GGCGCACGGGCAGCGACTTG
Product: fimbrial usher protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 850; Mature: 850
Protein sequence:
>850_residues MIRHRVADVGFSRIRVTMLAAALTALSATARGQQALEFDPAFLELGGGQGGADLSVYATSNRVLPGVYPVSVFVNGEAIE RRDITFVSESARDGREDAIPCLSARMFDEWGVDIAAFAKLAQAGEDACVDIADSVPHARTEFDSHQLRLNVTVPQAALKR RARGAVDPARWDQGIDAALLDYQLSAAQYAGGNFASARSRTTLYAGLRGAVNLGAWRLSHTSSFLRGLDGRNRFQIVNTF VQRDIAGWNSRLTAGEGTTPANIFDGFQFLGVQLNTDETMLPDSLQGYAPTVHGVAQTNAQVTIRQNGFVIYSTYVPPGP FTIDDLYPTSSSGNLEVTITEADGHVTTFTQPYSAVPMLLRDGSWRYNVTAGQYRDGISGSHPSFAMATLARGLAGEFSL YGGFIGAGMYQSVLVGIGKNLGSIGAVSLDVTHARSAVDLADSSTVSGHAFRVLYAKAVGSWGTDFRLLAYRYSTAGYRS FADAVQLRDGSEPAALGAKRQRLEGTVNQRLGRLGSMYATVAVQTYWGSAARSTVYQLGHSGNWGRASYGLYAAYSKGSG VPSSWNVSLSLSMPLEVFFGGARVRAPAGGSANVSYFASRNNENHVNQQMTASGSSSEQRLNYSVGVAHSSESDVSGSVS TSYLAPFGRYDASIGSGRGYTQAAFTAAGGMLWHGTGVLFTQPLGETVAVVDVPNVRGVRFEMHPGVSTDRAGEAVIPRL NPYRVNRIAVDQRRMPQDVEIRNPVSEVVPTRAAVVQTHFDSVVGLRALFTLTRADGSFPPQGATAENDEGQVLGVVGMD GETFVAGLPAAEGHFVVRWGAARQNRCRVNYVLPGKAANGAYTAVEATCD
Sequences:
>Translated_850_residues MIRHRVADVGFSRIRVTMLAAALTALSATARGQQALEFDPAFLELGGGQGGADLSVYATSNRVLPGVYPVSVFVNGEAIE RRDITFVSESARDGREDAIPCLSARMFDEWGVDIAAFAKLAQAGEDACVDIADSVPHARTEFDSHQLRLNVTVPQAALKR RARGAVDPARWDQGIDAALLDYQLSAAQYAGGNFASARSRTTLYAGLRGAVNLGAWRLSHTSSFLRGLDGRNRFQIVNTF VQRDIAGWNSRLTAGEGTTPANIFDGFQFLGVQLNTDETMLPDSLQGYAPTVHGVAQTNAQVTIRQNGFVIYSTYVPPGP FTIDDLYPTSSSGNLEVTITEADGHVTTFTQPYSAVPMLLRDGSWRYNVTAGQYRDGISGSHPSFAMATLARGLAGEFSL YGGFIGAGMYQSVLVGIGKNLGSIGAVSLDVTHARSAVDLADSSTVSGHAFRVLYAKAVGSWGTDFRLLAYRYSTAGYRS FADAVQLRDGSEPAALGAKRQRLEGTVNQRLGRLGSMYATVAVQTYWGSAARSTVYQLGHSGNWGRASYGLYAAYSKGSG VPSSWNVSLSLSMPLEVFFGGARVRAPAGGSANVSYFASRNNENHVNQQMTASGSSSEQRLNYSVGVAHSSESDVSGSVS TSYLAPFGRYDASIGSGRGYTQAAFTAAGGMLWHGTGVLFTQPLGETVAVVDVPNVRGVRFEMHPGVSTDRAGEAVIPRL NPYRVNRIAVDQRRMPQDVEIRNPVSEVVPTRAAVVQTHFDSVVGLRALFTLTRADGSFPPQGATAENDEGQVLGVVGMD GETFVAGLPAAEGHFVVRWGAARQNRCRVNYVLPGKAANGAYTAVEATCD >Mature_850_residues MIRHRVADVGFSRIRVTMLAAALTALSATARGQQALEFDPAFLELGGGQGGADLSVYATSNRVLPGVYPVSVFVNGEAIE RRDITFVSESARDGREDAIPCLSARMFDEWGVDIAAFAKLAQAGEDACVDIADSVPHARTEFDSHQLRLNVTVPQAALKR RARGAVDPARWDQGIDAALLDYQLSAAQYAGGNFASARSRTTLYAGLRGAVNLGAWRLSHTSSFLRGLDGRNRFQIVNTF VQRDIAGWNSRLTAGEGTTPANIFDGFQFLGVQLNTDETMLPDSLQGYAPTVHGVAQTNAQVTIRQNGFVIYSTYVPPGP FTIDDLYPTSSSGNLEVTITEADGHVTTFTQPYSAVPMLLRDGSWRYNVTAGQYRDGISGSHPSFAMATLARGLAGEFSL YGGFIGAGMYQSVLVGIGKNLGSIGAVSLDVTHARSAVDLADSSTVSGHAFRVLYAKAVGSWGTDFRLLAYRYSTAGYRS FADAVQLRDGSEPAALGAKRQRLEGTVNQRLGRLGSMYATVAVQTYWGSAARSTVYQLGHSGNWGRASYGLYAAYSKGSG VPSSWNVSLSLSMPLEVFFGGARVRAPAGGSANVSYFASRNNENHVNQQMTASGSSSEQRLNYSVGVAHSSESDVSGSVS TSYLAPFGRYDASIGSGRGYTQAAFTAAGGMLWHGTGVLFTQPLGETVAVVDVPNVRGVRFEMHPGVSTDRAGEAVIPRL NPYRVNRIAVDQRRMPQDVEIRNPVSEVVPTRAAVVQTHFDSVVGLRALFTLTRADGSFPPQGATAENDEGQVLGVVGMD GETFVAGLPAAEGHFVVRWGAARQNRCRVNYVLPGKAANGAYTAVEATCD
Specific function: Involved in the export and assembly of lpfA fimbrial subunits across the outer membrane [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI1786744, Length=838, Percent_Identity=37.5894988066826, Blast_Score=524, Evalue=1e-149, Organism=Escherichia coli, GI1790772, Length=885, Percent_Identity=36.045197740113, Blast_Score=501, Evalue=1e-143, Organism=Escherichia coli, GI1787172, Length=853, Percent_Identity=35.9906213364596, Blast_Score=485, Evalue=1e-138, Organism=Escherichia coli, GI1789533, Length=832, Percent_Identity=33.2932692307692, Blast_Score=446, Evalue=1e-126, Organism=Escherichia coli, GI1786332, Length=836, Percent_Identity=32.8947368421053, Blast_Score=405, Evalue=1e-114, Organism=Escherichia coli, GI1788427, Length=813, Percent_Identity=29.7662976629766, Blast_Score=312, Evalue=7e-86, Organism=Escherichia coli, GI87081778, Length=831, Percent_Identity=28.8808664259928, Blast_Score=267, Evalue=2e-72, Organism=Escherichia coli, GI1789610, Length=809, Percent_Identity=25.9579728059332, Blast_Score=146, Evalue=4e-36,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 - InterPro: IPR018030 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 90599; Mature: 90599
Theoretical pI: Translated: 7.49; Mature: 7.49
Prosite motif: PS00399 SUCCINYL_COA_LIG_2 ; PS01151 FIMBRIAL_USHER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRHRVADVGFSRIRVTMLAAALTALSATARGQQALEFDPAFLELGGGQGGADLSVYATS CCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCEEEECCCCCCCEEEEEEEC NRVLPGVYPVSVFVNGEAIERRDITFVSESARDGREDAIPCLSARMFDEWGVDIAAFAKL CCCCCCEEEEEEEECCCEECCCCEEEEECCCCCCCHHCCHHHHHHHHHHHCCCHHHHHHH AQAGEDACVDIADSVPHARTEFDSHQLRLNVTVPQAALKRRARGAVDPARWDQGIDAALL HHCCCCCEEEHHHCCCCCCCCCCCCEEEEEEECCHHHHHHHHCCCCCHHHHCCCCCEEHH DYQLSAAQYAGGNFASARSRTTLYAGLRGAVNLGAWRLSHTSSFLRGLDGRNRFQIVNTF HEEHHHHHHCCCCCCCCCCCEEEEECCCCCEECCEEEEHHHHHHHHCCCCCCHHHHHHHH VQRDIAGWNSRLTAGEGTTPANIFDGFQFLGVQLNTDETMLPDSLQGYAPTVHGVAQTNA HHHHHCCCCCEEECCCCCCCHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCC QVTIRQNGFVIYSTYVPPGPFTIDDLYPTSSSGNLEVTITEADGHVTTFTQPYSAVPMLL EEEEEECCEEEEEECCCCCCEEECCCCCCCCCCCEEEEEEECCCCEEEECCCCHHCCCEE RDGSWRYNVTAGQYRDGISGSHPSFAMATLARGLAGEFSLYGGFIGAGMYQSVLVGIGKN ECCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHHHHCCC LGSIGAVSLDVTHARSAVDLADSSTVSGHAFRVLYAKAVGSWGTDFRLLAYRYSTAGYRS CCCCEEEEEEEHHCCCHHCCCCCCCCCCCEEEEEEEEHHCCCCCCEEEEEEEECCCCHHH FADAVQLRDGSEPAALGAKRQRLEGTVNQRLGRLGSMYATVAVQTYWGSAARSTVYQLGH HHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHCEEEEEEEEECCCCHHHHHHHHHCC SGNWGRASYGLYAAYSKGSGVPSSWNVSLSLSMPLEVFFGGARVRAPAGGSANVSYFASR CCCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCEEEEECCEEEECCCCCCCCEEEEEEC NNENHVNQQMTASGSSSEQRLNYSVGVAHSSESDVSGSVSTSYLAPFGRYDASIGSGRGY CCCCCCCHHHCCCCCCCCCEEEEEEEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCCCC TQAAFTAAGGMLWHGTGVLFTQPLGETVAVVDVPNVRGVRFEMHPGVSTDRAGEAVIPRL CHHHHHHCCCEEEECCCEEEECCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCEECCCC NPYRVNRIAVDQRRMPQDVEIRNPVSEVVPTRAAVVQTHFDSVVGLRALFTLTRADGSFP CCEEEEEEEEHHHCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCC PQGATAENDEGQVLGVVGMDGETFVAGLPAAEGHFVVRWGAARQNRCRVNYVLPGKAANG CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEEECCCCCCC AYTAVEATCD CEEEEEEECC >Mature Secondary Structure MIRHRVADVGFSRIRVTMLAAALTALSATARGQQALEFDPAFLELGGGQGGADLSVYATS CCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCEEEECCCCCCCEEEEEEEC NRVLPGVYPVSVFVNGEAIERRDITFVSESARDGREDAIPCLSARMFDEWGVDIAAFAKL CCCCCCEEEEEEEECCCEECCCCEEEEECCCCCCCHHCCHHHHHHHHHHHCCCHHHHHHH AQAGEDACVDIADSVPHARTEFDSHQLRLNVTVPQAALKRRARGAVDPARWDQGIDAALL HHCCCCCEEEHHHCCCCCCCCCCCCEEEEEEECCHHHHHHHHCCCCCHHHHCCCCCEEHH DYQLSAAQYAGGNFASARSRTTLYAGLRGAVNLGAWRLSHTSSFLRGLDGRNRFQIVNTF HEEHHHHHHCCCCCCCCCCCEEEEECCCCCEECCEEEEHHHHHHHHCCCCCCHHHHHHHH VQRDIAGWNSRLTAGEGTTPANIFDGFQFLGVQLNTDETMLPDSLQGYAPTVHGVAQTNA HHHHHCCCCCEEECCCCCCCHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCC QVTIRQNGFVIYSTYVPPGPFTIDDLYPTSSSGNLEVTITEADGHVTTFTQPYSAVPMLL EEEEEECCEEEEEECCCCCCEEECCCCCCCCCCCEEEEEEECCCCEEEECCCCHHCCCEE RDGSWRYNVTAGQYRDGISGSHPSFAMATLARGLAGEFSLYGGFIGAGMYQSVLVGIGKN ECCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHHHHCCC LGSIGAVSLDVTHARSAVDLADSSTVSGHAFRVLYAKAVGSWGTDFRLLAYRYSTAGYRS CCCCEEEEEEEHHCCCHHCCCCCCCCCCCEEEEEEEEHHCCCCCCEEEEEEEECCCCHHH FADAVQLRDGSEPAALGAKRQRLEGTVNQRLGRLGSMYATVAVQTYWGSAARSTVYQLGH HHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHCEEEEEEEEECCCCHHHHHHHHHCC SGNWGRASYGLYAAYSKGSGVPSSWNVSLSLSMPLEVFFGGARVRAPAGGSANVSYFASR CCCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCEEEEECCEEEECCCCCCCCEEEEEEC NNENHVNQQMTASGSSSEQRLNYSVGVAHSSESDVSGSVSTSYLAPFGRYDASIGSGRGY CCCCCCCHHHCCCCCCCCCEEEEEEEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCCCC TQAAFTAAGGMLWHGTGVLFTQPLGETVAVVDVPNVRGVRFEMHPGVSTDRAGEAVIPRL CHHHHHHCCCEEEECCCEEEECCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCEECCCC NPYRVNRIAVDQRRMPQDVEIRNPVSEVVPTRAAVVQTHFDSVVGLRALFTLTRADGSFP CCEEEEEEEEHHHCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCC PQGATAENDEGQVLGVVGMDGETFVAGLPAAEGHFVVRWGAARQNRCRVNYVLPGKAANG CCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCCEEEEEEECCCCCCC AYTAVEATCD CEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7721701; 11677609 [H]