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The map label for this gene is hofQ [C]

Identifier: 237812067

GI number: 237812067

Start: 1759340

End: 1760665

Strand: Direct

Name: hofQ [C]

Synonym: GBP346_A1809

Alternate gene names: 237812067

Gene position: 1759340-1760665 (Clockwise)

Preceding gene: 237812066

Following gene: 237812068

Centisome position: 42.93

GC content: 69.91

Gene sequence:

>1326_bases
ATGAAAAATAAACTGATTGCATGGGCGGTGGCGTTCGGCGTGCTGCTGTCGTTCGCCGCGCGGGCGGCCGAGACGGGGAC
GATCGAGCTCGCCGCGGGGACGCAGCGGCAGATTGCCGTCGGGCACGGCGTGCAGCGGGTCGCCATCGCAGACCCGAACG
TCGCCGACGTGCTCGTCATCAAGGGCGGCCGCGGCGGCGTGCTGCTCGTCGCGAAGGCGGCCGGCACGACGAGCCTGATG
GTGTGGGAGCGCGGCCGCGACGAGCCGGCGGCCTACACGGTCAACGTCGTGAGCGGCGCGGCGCGCGCGCTGCTCGACGG
CGGCTCGCCGAGCGTGAAGGCGTACAACGGCACGGCGGTCGTGGCGGGCTCGGCCGCGACGCTCGACGCGCATGCGCGCG
CGCTCGCCGTCGGCAAGGGGATGGCGGGCAAGGACGGCGGCGTCCTCGACGTATCGACGGTCGGCGGCAAGAACGTCGTG
CAGGTCGACGTGCGCGTCGTCGAATTCAGCCGCTCGGTGCTCAAGCAGGCGGGCCTGAATTTCTTCAAGCAGAACAACGG
CTTCACGTTCGGCTCGTTCGCGCCCGCCGGCCTCGCGTCGGTGACGGGCGGCGGCACGTCGTCGATGTCGGTGTCGGCGA
ACATTCCGATCGCGTCCGCGTTCAACCTCGTCGTCGGCTCGGCGACGCGCGGCCTGTTCGCCGATCTGTCGATCCTCGAG
GCGAACAACCTCGCGCGCGTGCTCGCGCAGCCGACGCTCGTCGCGCTGTCCGGGCAGAGCGCGAGCTTCCTCGCGGGCGG
CGAGATCCCGGTGCCGGTGCCGCAGTCGCTCGGCACGATCTCGATCGACTGGAAGCCGTACGGCGTCGGCCTCACGCTGA
CGCCGACCGTGCTGAGCCCGCGCCGGATCGCGCTGAAGGTCGCGCCCGAATCGAGCCAGCTCGACTTCGTCCATTCGATC
ACGATCAACGGCGTGACGGTGCCCGCGCTCACGACGCGCCGCGCGGACACGACCGTCGAGCTGGGCGATGGCGAGAGCTT
CGCGATCGGCGGGCTGATCGACCGCGAGACGACGTCGAACGTCGACAAGGTGCCGTTCCTCGGCGATCTGCCGATCATCG
GCACGTTTTTCAAGCATCTCAGCTATCAGCAGAACGACAAGGAGCTCGTGATCATCGTGACGCCGCATCTCGTCGCGCCG
ATCGCGAAGAACGCGTCGCTGCCCGCGACGCCCGGCGAGCTGTCCGAACAGCGCGACGGGCCGGTGTGGCGGTCGTATCT
CGGCGGCGTGCTGTCGCCGGATGCGGGGCCGGGGTTCTCGAAATGA

Upstream 100 bases:

>100_bases
GATCCGGGGAGGGCGAGCCGAGACGCTCGCCTATTGATCGACAAGCGGTTTCGAACAGTGACGGCAGGGAGAGGGCCGGC
TCGCGCCGGTCTCCGACACG

Downstream 100 bases:

>100_bases
GCGCGCGACGCCACGGCCGCGCGCGCGCGAGCGCCGCGACGCGGCGCGCAACCGGAATGCATCACGATGAACGCGAGAAC
ACTCTCCTTGGCTGAACCCG

Product: type II/III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 441

Protein sequence:

>441_residues
MKNKLIAWAVAFGVLLSFAARAAETGTIELAAGTQRQIAVGHGVQRVAIADPNVADVLVIKGGRGGVLLVAKAAGTTSLM
VWERGRDEPAAYTVNVVSGAARALLDGGSPSVKAYNGTAVVAGSAATLDAHARALAVGKGMAGKDGGVLDVSTVGGKNVV
QVDVRVVEFSRSVLKQAGLNFFKQNNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGLFADLSILE
ANNLARVLAQPTLVALSGQSASFLAGGEIPVPVPQSLGTISIDWKPYGVGLTLTPTVLSPRRIALKVAPESSQLDFVHSI
TINGVTVPALTTRRADTTVELGDGESFAIGGLIDRETTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAP
IAKNASLPATPGELSEQRDGPVWRSYLGGVLSPDAGPGFSK

Sequences:

>Translated_441_residues
MKNKLIAWAVAFGVLLSFAARAAETGTIELAAGTQRQIAVGHGVQRVAIADPNVADVLVIKGGRGGVLLVAKAAGTTSLM
VWERGRDEPAAYTVNVVSGAARALLDGGSPSVKAYNGTAVVAGSAATLDAHARALAVGKGMAGKDGGVLDVSTVGGKNVV
QVDVRVVEFSRSVLKQAGLNFFKQNNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGLFADLSILE
ANNLARVLAQPTLVALSGQSASFLAGGEIPVPVPQSLGTISIDWKPYGVGLTLTPTVLSPRRIALKVAPESSQLDFVHSI
TINGVTVPALTTRRADTTVELGDGESFAIGGLIDRETTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAP
IAKNASLPATPGELSEQRDGPVWRSYLGGVLSPDAGPGFSK
>Mature_441_residues
MKNKLIAWAVAFGVLLSFAARAAETGTIELAAGTQRQIAVGHGVQRVAIADPNVADVLVIKGGRGGVLLVAKAAGTTSLM
VWERGRDEPAAYTVNVVSGAARALLDGGSPSVKAYNGTAVVAGSAATLDAHARALAVGKGMAGKDGGVLDVSTVGGKNVV
QVDVRVVEFSRSVLKQAGLNFFKQNNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGLFADLSILE
ANNLARVLAQPTLVALSGQSASFLAGGEIPVPVPQSLGTISIDWKPYGVGLTLTPTVLSPRRIALKVAPESSQLDFVHSI
TINGVTVPALTTRRADTTVELGDGESFAIGGLIDRETTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAP
IAKNASLPATPGELSEQRDGPVWRSYLGGVLSPDAGPGFSK

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=171, Percent_Identity=36.2573099415205, Blast_Score=96, Evalue=6e-21,
Organism=Escherichia coli, GI87082242, Length=168, Percent_Identity=29.1666666666667, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 45226; Mature: 45226

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKLIAWAVAFGVLLSFAARAAETGTIELAAGTQRQIAVGHGVQRVAIADPNVADVLVI
CCCCEEHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCCEEEEEECCCCCEEEEEE
KGGRGGVLLVAKAAGTTSLMVWERGRDEPAAYTVNVVSGAARALLDGGSPSVKAYNGTAV
ECCCCCEEEEEECCCCEEEEEEECCCCCCCEEEEEECCCHHHHHCCCCCCCEEEECCEEE
VAGSAATLDAHARALAVGKGMAGKDGGVLDVSTVGGKNVVQVDVRVVEFSRSVLKQAGLN
EECCCEEEHHHHEEEEECCCCCCCCCCEEEEEECCCCEEEEEEEEEEHHHHHHHHHHCCC
FFKQNNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGLFADLSILE
EEECCCCEEECCCCCCCHHEECCCCCCCEEEEECCCHHHHHHEEEECCCCCCEEEEEEEE
ANNLARVLAQPTLVALSGQSASFLAGGEIPVPVPQSLGTISIDWKPYGVGLTLTPTVLSP
CCCHHHHHCCCEEEEEECCCCEEEECCCCCCCCCCCCCEEEEEEEEEEECEEECCCCCCC
RRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFAIGGLIDRETTSN
CEEEEEECCCCCCEEEEEEEEECCEEECEEEECCCCCEEEECCCCEEEECCEECCCCCCC
VDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIAKNASLPATPGELSEQRDG
CCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHCCCCCCCCCCCCCCCCCC
PVWRSYLGGVLSPDAGPGFSK
CHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MKNKLIAWAVAFGVLLSFAARAAETGTIELAAGTQRQIAVGHGVQRVAIADPNVADVLVI
CCCCEEHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCCEEEEEECCCCCEEEEEE
KGGRGGVLLVAKAAGTTSLMVWERGRDEPAAYTVNVVSGAARALLDGGSPSVKAYNGTAV
ECCCCCEEEEEECCCCEEEEEEECCCCCCCEEEEEECCCHHHHHCCCCCCCEEEECCEEE
VAGSAATLDAHARALAVGKGMAGKDGGVLDVSTVGGKNVVQVDVRVVEFSRSVLKQAGLN
EECCCEEEHHHHEEEEECCCCCCCCCCEEEEEECCCCEEEEEEEEEEHHHHHHHHHHCCC
FFKQNNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGLFADLSILE
EEECCCCEEECCCCCCCHHEECCCCCCCEEEEECCCHHHHHHEEEECCCCCCEEEEEEEE
ANNLARVLAQPTLVALSGQSASFLAGGEIPVPVPQSLGTISIDWKPYGVGLTLTPTVLSP
CCCHHHHHCCCEEEEEECCCCEEEECCCCCCCCCCCCCEEEEEEEEEEECEEECCCCCCC
RRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFAIGGLIDRETTSN
CEEEEEECCCCCCEEEEEEEEECCEEECEEEECCCCCEEEECCCCEEEECCEECCCCCCC
VDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIAKNASLPATPGELSEQRDG
CCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHCCCCCCCCCCCCCCCCCC
PVWRSYLGGVLSPDAGPGFSK
CHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]