| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is 237812026
Identifier: 237812026
GI number: 237812026
Start: 1716525
End: 1717727
Strand: Reverse
Name: 237812026
Synonym: GBP346_A1768
Alternate gene names: NA
Gene position: 1717727-1716525 (Counterclockwise)
Preceding gene: 237812027
Following gene: 237812025
Centisome position: 41.91
GC content: 66.33
Gene sequence:
>1203_bases ATGCCCCTCAAGATCGCGTGGTACACCGCGGCACTCGCCGCGACGCTTGCCGCATGCGGCGGCGGTGGCGGTGGCGGCGG CTCGACGACATCGAACCCGAACGGCACTGGCGTCACGCCGTCCAGCGCGGCGAACGTGCAACCCGTGACGGTGTCCGCGG GCATCACCGGCGCGGCGAACATGCTGATGACGAGCGTCACCGTTTGCGTGCCGAATACGAACCAATGCCAGACGATCGAC AACGTGCAGGTGGATACCGGCTCGGACGGCTTGCGCATCCTTGCGGCCGCGCTGCCGTCGAGCGTCGCGCTACCTGTCGT GCCGGCCGCGAATGCGCCGATCACGGGCGCGTGCGCGATATTCGGCACGGGCTTTACATGGGGCGCGGTGCGTCGCGCCG ATGTGAGGATCGCGGGCGAGATCGCGGCGAACATCCCGATTCAGGTGATCGCCGATTCGAGCACGCCGAACGCGCCCATC GACTGCACGCAGAGCGCCGGGCCCATGCAAACGCAAGGGGCGCTGCGTGCGAACGGCATCCTCGGCATCGGCCTCTTCGT CACCGACTGCGGCACTGCTTGCGCCAACAGCGCGCTGCCCGGCTGGTATTACGGGTGCACGACGAGCGGCACATGCGCAA GCACATCGCAACCGATCGCGCAGCAAATTGCGAATCCGATCGGCGCATTCGCGAGCGACAACAACGGCTCGATAATCGTG CTGCCCGCGATTTCACCGACCGGCGCGGCGACGGTCAACGGCTCGCTGATCTTCGGCATCGGCACCCAGGCGAACAACGG GCTCGGCACCGCTACGCCGCTCGTGACGACCGCATCGGACGCTTACGTGACGAGCGTGCTCAACGGCAACACCAACGCGC GCACGTTCTTCGATAGCGGCTCGAACGGGATCTTCTTCGCGGACGCGTCGCTGCCGCAGTGCGGTTCGTGGTTCTGCCCG GCGAGCACGCAGACGTTCGACATCACGCTGAGCAGCGGCAACGGCGCGTCGAAAGCGACGACGTTCCAGGTCGCGAGTTC GCAGGTGCTGTTCTCGACGTTCAACTTCGCCTTCAACGACCTTGCCGGGCCGATCGGTAATGTCGTCGATCTCGGACTGT CGTTCTTCTATGGGCGCAACGTCTATACGGCGCTCGAAGGCAGCGCGACGCCGGCAGGCCCGGGGCCGTACTACGCGTAC TGA
Upstream 100 bases:
>100_bases GAAGCCGGCGGCCGCATGCGCGCGTATGTGGGCCGCGCGTGGCTGCCCGGCGCGGTGCCGCCCGGCGTGTCGATCGACGA CTTGCGGTGAGGAGACGGCC
Downstream 100 bases:
>100_bases ACGCTGAGCGGAACGTGCGCCGCCCGGTTGGGGACGCCGCGCGAAGCTCGCCGGCGAGGCAGCGCGCCCCGTCGATCCGC ATTGACCGATACACATCGAT
Product: Gly/Ala/Ser-rich lipoprotein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 400; Mature: 399
Protein sequence:
>400_residues MPLKIAWYTAALAATLAACGGGGGGGGSTTSNPNGTGVTPSSAANVQPVTVSAGITGAANMLMTSVTVCVPNTNQCQTID NVQVDTGSDGLRILAAALPSSVALPVVPAANAPITGACAIFGTGFTWGAVRRADVRIAGEIAANIPIQVIADSSTPNAPI DCTQSAGPMQTQGALRANGILGIGLFVTDCGTACANSALPGWYYGCTTSGTCASTSQPIAQQIANPIGAFASDNNGSIIV LPAISPTGAATVNGSLIFGIGTQANNGLGTATPLVTTASDAYVTSVLNGNTNARTFFDSGSNGIFFADASLPQCGSWFCP ASTQTFDITLSSGNGASKATTFQVASSQVLFSTFNFAFNDLAGPIGNVVDLGLSFFYGRNVYTALEGSATPAGPGPYYAY
Sequences:
>Translated_400_residues MPLKIAWYTAALAATLAACGGGGGGGGSTTSNPNGTGVTPSSAANVQPVTVSAGITGAANMLMTSVTVCVPNTNQCQTID NVQVDTGSDGLRILAAALPSSVALPVVPAANAPITGACAIFGTGFTWGAVRRADVRIAGEIAANIPIQVIADSSTPNAPI DCTQSAGPMQTQGALRANGILGIGLFVTDCGTACANSALPGWYYGCTTSGTCASTSQPIAQQIANPIGAFASDNNGSIIV LPAISPTGAATVNGSLIFGIGTQANNGLGTATPLVTTASDAYVTSVLNGNTNARTFFDSGSNGIFFADASLPQCGSWFCP ASTQTFDITLSSGNGASKATTFQVASSQVLFSTFNFAFNDLAGPIGNVVDLGLSFFYGRNVYTALEGSATPAGPGPYYAY >Mature_399_residues PLKIAWYTAALAATLAACGGGGGGGGSTTSNPNGTGVTPSSAANVQPVTVSAGITGAANMLMTSVTVCVPNTNQCQTIDN VQVDTGSDGLRILAAALPSSVALPVVPAANAPITGACAIFGTGFTWGAVRRADVRIAGEIAANIPIQVIADSSTPNAPID CTQSAGPMQTQGALRANGILGIGLFVTDCGTACANSALPGWYYGCTTSGTCASTSQPIAQQIANPIGAFASDNNGSIIVL PAISPTGAATVNGSLIFGIGTQANNGLGTATPLVTTASDAYVTSVLNGNTNARTFFDSGSNGIFFADASLPQCGSWFCPA STQTFDITLSSGNGASKATTFQVASSQVLFSTFNFAFNDLAGPIGNVVDLGLSFFYGRNVYTALEGSATPAGPGPYYAY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39825; Mature: 39694
Theoretical pI: Translated: 4.06; Mature: 4.06
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLKIAWYTAALAATLAACGGGGGGGGSTTSNPNGTGVTPSSAANVQPVTVSAGITGAAN CCEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHH MLMTSVTVCVPNTNQCQTIDNVQVDTGSDGLRILAAALPSSVALPVVPAANAPITGACAI HHEEEEEEEECCCCCCEEECCEEEECCCCCHHHHEECCCCCCCEEEEECCCCCCCEEEEE FGTGFTWGAVRRADVRIAGEIAANIPIQVIADSSTPNAPIDCTQSAGPMQTQGALRANGI EECCCCCCCEEEECEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCE LGIGLFVTDCGTACANSALPGWYYGCTTSGTCASTSQPIAQQIANPIGAFASDNNGSIIV EEEEEEEECCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEE LPAISPTGAATVNGSLIFGIGTQANNGLGTATPLVTTASDAYVTSVLNGNTNARTFFDSG EECCCCCCCEEECCEEEEEECCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCEEEEECC SNGIFFADASLPQCGSWFCPASTQTFDITLSSGNGASKATTFQVASSQVLFSTFNFAFND CCEEEEEECCCCCCCCEECCCCCEEEEEEEECCCCCCCEEEEEEECCEEEEHHHHHHHHH LAGPIGNVVDLGLSFFYGRNVYTALEGSATPAGPGPYYAY HCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC >Mature Secondary Structure PLKIAWYTAALAATLAACGGGGGGGGSTTSNPNGTGVTPSSAANVQPVTVSAGITGAAN CEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHH MLMTSVTVCVPNTNQCQTIDNVQVDTGSDGLRILAAALPSSVALPVVPAANAPITGACAI HHEEEEEEEECCCCCCEEECCEEEECCCCCHHHHEECCCCCCCEEEEECCCCCCCEEEEE FGTGFTWGAVRRADVRIAGEIAANIPIQVIADSSTPNAPIDCTQSAGPMQTQGALRANGI EECCCCCCCEEEECEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCE LGIGLFVTDCGTACANSALPGWYYGCTTSGTCASTSQPIAQQIANPIGAFASDNNGSIIV EEEEEEEECCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEE LPAISPTGAATVNGSLIFGIGTQANNGLGTATPLVTTASDAYVTSVLNGNTNARTFFDSG EECCCCCCCEEECCEEEEEECCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCEEEEECC SNGIFFADASLPQCGSWFCPASTQTFDITLSSGNGASKATTFQVASSQVLFSTFNFAFND CCEEEEEECCCCCCCCEECCCCCEEEEEEEECCCCCCCEEEEEEECCEEEEHHHHHHHHH LAGPIGNVVDLGLSFFYGRNVYTALEGSATPAGPGPYYAY HCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA