| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is 237811988
Identifier: 237811988
GI number: 237811988
Start: 1676287
End: 1676736
Strand: Reverse
Name: 237811988
Synonym: GBP346_A1728
Alternate gene names: NA
Gene position: 1676736-1676287 (Counterclockwise)
Preceding gene: 237811989
Following gene: 237811987
Centisome position: 40.91
GC content: 73.33
Gene sequence:
>450_bases ATGAGCGCGCCCGTCGCCGCGAAGCCGCTCGCCGCGCACGCGGCCGCGCTTTGCCTCGTCGCGCTGATCGCGCTCGGCGT CGCGTGGGAAGCGTGGCTCGCGCCGCTGCGCCCGGGCGGCTCCGCGCTGATTCTGAAGGCCGTGCCGCTCGCGCTCGCGC TGCCCGGCGTGTGGCGGCGCAGCGTGTACACGCTGCAGTGGGCGTCGATGCTGATTTTGATTTATCTTGCGGAAGGCATC GTGCGCGGCATGACGGACGGCGGGCTGTCGGCCCGTCTCGGCTGGCTCGAGGCCGCGCTCGCGCTCGGCTTCTTCGGCGC CGCGCTCGCCTATGTCGCACCTTACAAGCGCGCCGCGAAACAGGCGGCGAAACAGGCGGCGAGGCGGGCGGAACAACCCG AGAAGCACGCGCCGGCGCGTGCGCGCGCGTCCGATCGCACCCGCCCCTGA
Upstream 100 bases:
>100_bases ACCCGGCCCACGAGCGCATTTCCGCCGACGAGAAGACGCTCGCGCACGCGCTCGGCGCGCGGCTCGCACGCACCGCGTCG CAGCTCGGCGCCGCGGCCGC
Downstream 100 bases:
>100_bases TTATTTCGTTTGCCGGACATCCCGAACTCACGCCATGACCTCCACCTCCGCTTTCGTCGACGCCTGCCGCCACGCAATCG GCGCCGACCACGTGCTGACC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 149; Mature: 148
Protein sequence:
>149_residues MSAPVAAKPLAAHAAALCLVALIALGVAWEAWLAPLRPGGSALILKAVPLALALPGVWRRSVYTLQWASMLILIYLAEGI VRGMTDGGLSARLGWLEAALALGFFGAALAYVAPYKRAAKQAAKQAARRAEQPEKHAPARARASDRTRP
Sequences:
>Translated_149_residues MSAPVAAKPLAAHAAALCLVALIALGVAWEAWLAPLRPGGSALILKAVPLALALPGVWRRSVYTLQWASMLILIYLAEGI VRGMTDGGLSARLGWLEAALALGFFGAALAYVAPYKRAAKQAAKQAARRAEQPEKHAPARARASDRTRP >Mature_148_residues SAPVAAKPLAAHAAALCLVALIALGVAWEAWLAPLRPGGSALILKAVPLALALPGVWRRSVYTLQWASMLILIYLAEGIV RGMTDGGLSARLGWLEAALALGFFGAALAYVAPYKRAAKQAAKQAARRAEQPEKHAPARARASDRTRP
Specific function: Unknown
COG id: COG3308
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15673; Mature: 15542
Theoretical pI: Translated: 11.29; Mature: 11.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAPVAAKPLAAHAAALCLVALIALGVAWEAWLAPLRPGGSALILKAVPLALALPGVWRR CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHH SVYTLQWASMLILIYLAEGIVRGMTDGGLSARLGWLEAALALGFFGAALAYVAPYKRAAK HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QAAKQAARRAEQPEKHAPARARASDRTRP HHHHHHHHHCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SAPVAAKPLAAHAAALCLVALIALGVAWEAWLAPLRPGGSALILKAVPLALALPGVWRR CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHH SVYTLQWASMLILIYLAEGIVRGMTDGGLSARLGWLEAALALGFFGAALAYVAPYKRAAK HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QAAKQAARRAEQPEKHAPARARASDRTRP HHHHHHHHHCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA