| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is 237811970
Identifier: 237811970
GI number: 237811970
Start: 1651583
End: 1652929
Strand: Direct
Name: 237811970
Synonym: GBP346_A1710
Alternate gene names: NA
Gene position: 1651583-1652929 (Clockwise)
Preceding gene: 237811969
Following gene: 237811971
Centisome position: 40.3
GC content: 70.75
Gene sequence:
>1347_bases GTGACGAAGTACGTGCTGACGGCATGCTGTGCCGCAGCGACGGCGCTCGCGGCGCAGCACGCCGCCGCGCAGTCGGCTAA GAACCGGTCGGTGGCGACCGTCGACTACACGACGCGCAGCGGCGACACGCTGTACGACGTCTCGGCCCGCTATCTGCAAG GCACGGACGACTGGCCGCTCGTCGCGCAACTGAACGACGTGCCGGTGCCGAAGCATCTGCAGCCGGGCGTCGTGCTGAAG CTGCCCGCCGCGCGGCTGCGCAAGGAGCGGCTGTCGGCGCGGGTGATCGCCGCGCACGGCACGGTCGAGAGCGCGGGGCG CGGCTCCGCGCAGTTCGCGCCCGTCGCCGTCGACGCGACGCTCACGGAAGGCGACCGCCTGCGCACGGGCTCGAACGCGT TCGTCACGCTCGAGCTCTCGGACGGCACGCACCTGAGCCTGCCGCCCGACAGCCAGATCGACCTCGCGACACTGCGTCGC ACGGTGCTCACGGGCACGCTCGAGCGCGTGATCGATCTGCGCCGCGGCTCGGTCGACAGCGAAGTCACCCATCTGAAGAA GAAGGACGATCGCTTCCAGATCCGCTCGCCGTCGGTCGTCGCCGGCGTGCGCGGCACGCGCTTTCGCGTGAATTACGACA AGGATGGCCGCGCGTCGACGACGGTCGAAGTGCTCGACGGCACGGTGGGCGTCGCGCCGAGCGCGAAGCGCTCGGCCGAC ACGCTCGTGCACGCGAACTTCGGCAACGTGACGAGCGCGAGCGGCGTCGTCGGCAGCCCGATCGCGCTGCTCGACGCGCC GCAGCTCGCCAACCCGGCGAAGATCCAGGACGATCCGCAGGTCGCGTTCGACCTCGTGCCGCTCGGCGGCGCGCAAAGCT ATCACGTGCAGATCGCGCGCGACGCGGGCCTGTACGATCTCTTCAAGGAAGTGCAGGTGTCGGCGCCGCGCGCGACGTTC GCCGACGTGCCGGACGGCACCTATTTCGTCCGGATCGCGGCGATCGATTCGCACGGTCTCGAGGGCCAGCCGCGCATCTA CGCGTTCGAGCGGCGCCGCTTCGGGGTCGACGCGTCGGCCGCGCCCGCCGACGGCGGCTACGCGTTCCGCTGGTCGACGA CGCAAGACGGCGCGGCGGCCGGCGTGACGCGCTTTCGCTTCGTGCTGTCGCGCTCGAAGGACCTGAGCAACCCGATCGTC GACCAGGTCGACGCGCAGGGCGGGCGCATCGCCGTGTCGAACCTGACGCCGGGCGACTACTACTGGAGCGTGATCGCGGA GCGCTACGAAGGCGGCCGTTTCCACGAAAAGGCCAGCGCGGTCAACGCGTTCACGATCGCGCGCTGA
Upstream 100 bases:
>100_bases TGCGCCCGGAGAACGGCTACCGCCTCGCGCCGATCTACGGCTACGGCTATCGCCTCGAGCGCGTGATGCAGGGGGACGCC GAGTGAACGCGCGCGGGTTC
Downstream 100 bases:
>100_bases TGGGCGGCGGATGAGATTCGACCGCACGCAACGGCGGCGGCTGCTCGGCCGCCGTTTTCTCGTCGAGTGGATCGCGATCG GCTGCCTCGGGGTCGCGGTG
Product: LysM domain protein
Products: NA
Alternate protein names: LysM Domain-Containing Protein; LysM Cell Wall-Like Protein; LysM Domain-Containing; LysM Motif-Containing Protein; LysM Domain Protein
Number of amino acids: Translated: 448; Mature: 447
Protein sequence:
>448_residues MTKYVLTACCAAATALAAQHAAAQSAKNRSVATVDYTTRSGDTLYDVSARYLQGTDDWPLVAQLNDVPVPKHLQPGVVLK LPAARLRKERLSARVIAAHGTVESAGRGSAQFAPVAVDATLTEGDRLRTGSNAFVTLELSDGTHLSLPPDSQIDLATLRR TVLTGTLERVIDLRRGSVDSEVTHLKKKDDRFQIRSPSVVAGVRGTRFRVNYDKDGRASTTVEVLDGTVGVAPSAKRSAD TLVHANFGNVTSASGVVGSPIALLDAPQLANPAKIQDDPQVAFDLVPLGGAQSYHVQIARDAGLYDLFKEVQVSAPRATF ADVPDGTYFVRIAAIDSHGLEGQPRIYAFERRRFGVDASAAPADGGYAFRWSTTQDGAAAGVTRFRFVLSRSKDLSNPIV DQVDAQGGRIAVSNLTPGDYYWSVIAERYEGGRFHEKASAVNAFTIAR
Sequences:
>Translated_448_residues MTKYVLTACCAAATALAAQHAAAQSAKNRSVATVDYTTRSGDTLYDVSARYLQGTDDWPLVAQLNDVPVPKHLQPGVVLK LPAARLRKERLSARVIAAHGTVESAGRGSAQFAPVAVDATLTEGDRLRTGSNAFVTLELSDGTHLSLPPDSQIDLATLRR TVLTGTLERVIDLRRGSVDSEVTHLKKKDDRFQIRSPSVVAGVRGTRFRVNYDKDGRASTTVEVLDGTVGVAPSAKRSAD TLVHANFGNVTSASGVVGSPIALLDAPQLANPAKIQDDPQVAFDLVPLGGAQSYHVQIARDAGLYDLFKEVQVSAPRATF ADVPDGTYFVRIAAIDSHGLEGQPRIYAFERRRFGVDASAAPADGGYAFRWSTTQDGAAAGVTRFRFVLSRSKDLSNPIV DQVDAQGGRIAVSNLTPGDYYWSVIAERYEGGRFHEKASAVNAFTIAR >Mature_447_residues TKYVLTACCAAATALAAQHAAAQSAKNRSVATVDYTTRSGDTLYDVSARYLQGTDDWPLVAQLNDVPVPKHLQPGVVLKL PAARLRKERLSARVIAAHGTVESAGRGSAQFAPVAVDATLTEGDRLRTGSNAFVTLELSDGTHLSLPPDSQIDLATLRRT VLTGTLERVIDLRRGSVDSEVTHLKKKDDRFQIRSPSVVAGVRGTRFRVNYDKDGRASTTVEVLDGTVGVAPSAKRSADT LVHANFGNVTSASGVVGSPIALLDAPQLANPAKIQDDPQVAFDLVPLGGAQSYHVQIARDAGLYDLFKEVQVSAPRATFA DVPDGTYFVRIAAIDSHGLEGQPRIYAFERRRFGVDASAAPADGGYAFRWSTTQDGAAAGVTRFRFVLSRSKDLSNPIVD QVDAQGGRIAVSNLTPGDYYWSVIAERYEGGRFHEKASAVNAFTIAR
Specific function: Unknown
COG id: COG4254
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47936; Mature: 47805
Theoretical pI: Translated: 8.90; Mature: 8.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.2 %Met (Translated Protein) 0.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKYVLTACCAAATALAAQHAAAQSAKNRSVATVDYTTRSGDTLYDVSARYLQGTDDWPL CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEECCHHEECCCCCCCE VAQLNDVPVPKHLQPGVVLKLPAARLRKERLSARVIAAHGTVESAGRGSAQFAPVAVDAT EEECCCCCCCCCCCCCEEEECCHHHHHHHHHCEEEEEECCCCCCCCCCCCEEEEEEEEEE LTEGDRLRTGSNAFVTLELSDGTHLSLPPDSQIDLATLRRTVLTGTLERVIDLRRGSVDS ECCCCCEECCCCEEEEEEECCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCH EVTHLKKKDDRFQIRSPSVVAGVRGTRFRVNYDKDGRASTTVEVLDGTVGVAPSAKRSAD HHHHHHCCCCCEEECCCCEEECCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCC TLVHANFGNVTSASGVVGSPIALLDAPQLANPAKIQDDPQVAFDLVPLGGAQSYHVQIAR EEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEC DAGLYDLFKEVQVSAPRATFADVPDGTYFVRIAAIDSHGLEGQPRIYAFERRRFGVDASA CCCHHHHHHHHHCCCCCCEECCCCCCEEEEEEEEEECCCCCCCCCEEEEECHHCCCCCCC APADGGYAFRWSTTQDGAAAGVTRFRFVLSRSKDLSNPIVDQVDAQGGRIAVSNLTPGDY CCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCEEEEECCCCCHH YWSVIAERYEGGRFHEKASAVNAFTIAR HHHHHHHHHCCCCHHHHHHHCCEEEECC >Mature Secondary Structure TKYVLTACCAAATALAAQHAAAQSAKNRSVATVDYTTRSGDTLYDVSARYLQGTDDWPL CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEECCHHEECCCCCCCE VAQLNDVPVPKHLQPGVVLKLPAARLRKERLSARVIAAHGTVESAGRGSAQFAPVAVDAT EEECCCCCCCCCCCCCEEEECCHHHHHHHHHCEEEEEECCCCCCCCCCCCEEEEEEEEEE LTEGDRLRTGSNAFVTLELSDGTHLSLPPDSQIDLATLRRTVLTGTLERVIDLRRGSVDS ECCCCCEECCCCEEEEEEECCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCH EVTHLKKKDDRFQIRSPSVVAGVRGTRFRVNYDKDGRASTTVEVLDGTVGVAPSAKRSAD HHHHHHCCCCCEEECCCCEEECCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCC TLVHANFGNVTSASGVVGSPIALLDAPQLANPAKIQDDPQVAFDLVPLGGAQSYHVQIAR EEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEC DAGLYDLFKEVQVSAPRATFADVPDGTYFVRIAAIDSHGLEGQPRIYAFERRRFGVDASA CCCHHHHHHHHHCCCCCCEECCCCCCEEEEEEEEEECCCCCCCCCEEEEECHHCCCCCCC APADGGYAFRWSTTQDGAAAGVTRFRFVLSRSKDLSNPIVDQVDAQGGRIAVSNLTPGDY CCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCEEEEECCCCCHH YWSVIAERYEGGRFHEKASAVNAFTIAR HHHHHHHHHCCCCHHHHHHHCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA