| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is 237811891
Identifier: 237811891
GI number: 237811891
Start: 1570357
End: 1573191
Strand: Direct
Name: 237811891
Synonym: GBP346_A1631
Alternate gene names: NA
Gene position: 1570357-1573191 (Clockwise)
Preceding gene: 237811890
Following gene: 237811892
Centisome position: 38.31
GC content: 70.97
Gene sequence:
>2835_bases ATGTCGATCCCCACTGACGTTCTGCAAGCACTCTTCGGCGGCTGGTCGCAACACGACCGCTTTCTCTGGATCACGACGCC GCTCGGCGCGAACGCGCTCGTCGCGGAAAGCCTGCACGGCTGGGAGGCGCTCGACGATGGCGGCTTCCGTTTGCAGCTCA CCGCGCTCGCCGAGCATCCGTCGCTGCCGCTCGCGCAACTGATCGGCGCGCCGATCCTGATCGAATGGCAGGCGCAGGAA GGGCGCGACGCGCGCCGGCCGTTCCACGGCCACGTGATCGCCGCCGAGCTCGTCGGCTACAACGGCGGCCTCGCACGCGT GCGGCTCGTCGTCGAGCCGTGGCTCACGCTGCTGCGGCAGCGCGTCGACAGCTACAACTATCTGGACGCGAGCGTCGTCG AGATCAGCGAACAGGTGTTCCGCCGTTACGCGCGCGGCGCGATCGCGCCCGCATGGCGATGGGCGCTCGCCGATGCGGCG AAGTACCCGAAGCGCAGCTTGACCGCGCAAGCCGGCGAGTCCGATTTCGACTTCCTCGAGCGGCTCTGGGCGGAGGAGGG CATCTTCTACTGGTTCGAGCACGAAGGCGACGCGCGCGCATCGAGCCTCGGCAAGCACACGCTCGTGCTCGCCGATTCGA ATCAGCGCTTCGCGCCGGACGAACCGGAGATCGTCGGCTTTCATCAGACGAGCGACGACGACCCGCAAGGCTGCATCCAG CACTTCATGCACGCGCGGCGTTGGCGCATCGGCAGCGTCGCGCGCGCGAGCTGGGATCACCGCAGCCTGTCGACGCGTCC GACGGGCGCGCGCGCGAACGGCGCGGTCGCGCCGGGCGAGGATCGCGACGTCGCGGGCCCGTACGCATACCAGACGGGCG CGATCGGAGACCGGCGCGCGCAGCAGCAACTCGACGCCCAGCGCGTGGCCGCGCTGCGGAGCGAAGGCCGCAGCACGCGC CGCGATCTGCGGCCCGGGCTGCGTTTTGCGATCGCGCATCATCCGACGCTCGGCGTATCGGATGCGTTCATCTGCCTACG CGTCGAGCATTCGGCGCGCGCGAACGTCGATGCGACCGTGCGCAGCGCGATCGAACAGCGCCTCGGCGCGATTGCGTCGA TCGCCGGCGCCGCGCCGGTGCCGCATGGCCCCGCGAGCGCGCTGAATGCGGCGCTCGGCGCCGATACGCATCACGGCGGA TCGCTGATGCGGGACGACGCCGTCTATCGCAATCGCTTCGTCGCGTTGCCCGCCGAGCAGACGTATCGGCCGCTCGCCGC ATCCGGCCATGGCGCGCGCATGCACCCGGTCGCCGTGATGCCGGGGGCGCAGACGGCGATCGTCGTGGGCGCGGGCGATC CCGTTCACACCGACCGGGATCACCGGATTCGAATCCAGCACCACGCGCAGCGCGGCGAGAATGCGGCGAGCCGCGACGAT CACCCGCATGCGGCGAACGCGCCGGCGAACCGTGGCGCGGGCACGTGGACGCGGATGATGACGCCCGTGGGCGGCGATAA CTGGGGTGGGGTGAGCGTGCCGCGCGTCGGGCAGGAAGTGTGGACCGAATGGCTCGAAGGCCAGCCCGACCGGCCGGTTG CGGTGGCCGCGCTCTACAACGGCCGCGGCAACGCGCACGCGCAGCACAACGCGCAGGCGGGAGGGCCGAGCGGCAGCACC GGCAATGCGGCCGCATGGTTCGCCGGCAATGCGCATGCGGCGGTGCTGACGGGTTTCAAGACGCAGGACATGAGCATGAG CCAGCAAGGCACGGGCGGCTATCGGCAATTCATGCTCGACGATACGGCGGGCCAGTCGAGCGCGCGCCTGTACACGACGG ACCGCAACAGCGGGCTCACGCTCGGGCACGTGAAGCAGACGCAGGACAACCGGCGCCAGGCCGATCGCGGCTATGGCGCG GAACTGGCGACGGATGCCGCCGGCGCGCTGCGCGGCGGCGCGGGGCTCTTGATCAGCACGGCGCCCGGCGTGAGCCAGAT GGATGCGAGCGCGCCGAGCCAGGTGCTCGCTCAGCATCGACAGACGTTGCAAAGCCTCGCGGCGCTCGCGCACAAGCAGG GCGCGGAGCCGGGCGGTGCGGTGCCCGAGGCGGCGGGCGGAGCGGGCGCGGCGTCGGCGTCGACGGGGGCGGCGGCGGAC AAGCCTTTGCCGGCCGTCGATGGCATCGAGCAGAGCCGTGAAGCGATCGGCGCGACGCGTGAAGGAAGCGGCGGCGATAC GGCAGGCGGCGGGGGCGGCGGCGCGATTGCGTGGAGCAAGCCGCATCTCGTCGCACACGGCGAGGCGGGGCTGGCCGCGA TGTCGGCGAAGAGCCACGTGTGGGTGTCGGGTACCGAGACGGTGTTGAGCGCCGGACAGGACGTGCAATTGACGGCGAAG GGCAAGACGAGCGTCGTCGCGAATCACGGCATCTCGCTGTATACGCAGGGCGCGGCGGGCGACGGGCGGCCGGTTGCCGG CCGGGGCATCGCGTTGCACGCGGCGTCCGGCGCGGTGAGCATGCAAGCGCAGAACGCCGGCAAGCTGAGCGCGAGCGCGC AGAAGGCGGTGACGCTCGCGAGCGCGCAAGGCAGCGCGTCCGTGCAGGCGCAGCAGCGCGTCCTGCTGAGCGCGGCGAAG GCCTATCTGAAGATGGAAGGCAACGACATCGTCGTCGGCGCGCCGGGGCGCGCGGATTTCAAGGCGGCGGCGCATCAGTT GACGGGGCCGAAGAGCGCGGGGGCGCAGAGCACGTTGGGCAAGGGCGCTTCGAGGGATTGTCCGCAGACGATGGGTGACA TGATTTCGTCCAGCGCCGCATTCGCCGATCTATAA
Upstream 100 bases:
>100_bases ACCCGCGCTTCGCGCCGCAAGCGCTCGCCGCGCCGCGCCCCAACACCTGGACCCGCGCCGCGAAAACGTCGCGCGCGGGG CCTATTGAACGGAACGAGCC
Downstream 100 bases:
>100_bases GCCATGGCCGATACATACTCGCTTTGGGAAGCGCAGCCGGGCAACGCGATTGCGAATGCCGAATCGGTTTCCCCTGTCGA GGTGCTGCTGGCCGAACTGC
Product: Rhs element Vgr protein
Products: NA
Alternate protein names: Type VI Secretion System Vgr Family Protein; VGR-Related Protein; Vgr-Related Protein; VgrG Protein; Rhs Element Vgr Family Protein; Rhs-Family Protein; Rhs Element Vgr Family; VGR-Related Type VI Secretion System Protein; Vgr Related Protein; Rhs Family Protein; Rhs Element Vgr Related Protein; Rhs Element Vgr-Related Protein; Conserved Hypothethical Protein; Rhs Element VGR-Related Protein; Rhs Element Vgr ProteinGp5-Like; Type VI Secretion System VgrG Family Protein; VGR-Like Protein; Fimbrial Operon Related Protein; Vgr Protein; VgrG Family T6SS G; Vgr Family Type VI Secretion System
Number of amino acids: Translated: 944; Mature: 943
Protein sequence:
>944_residues MSIPTDVLQALFGGWSQHDRFLWITTPLGANALVAESLHGWEALDDGGFRLQLTALAEHPSLPLAQLIGAPILIEWQAQE GRDARRPFHGHVIAAELVGYNGGLARVRLVVEPWLTLLRQRVDSYNYLDASVVEISEQVFRRYARGAIAPAWRWALADAA KYPKRSLTAQAGESDFDFLERLWAEEGIFYWFEHEGDARASSLGKHTLVLADSNQRFAPDEPEIVGFHQTSDDDPQGCIQ HFMHARRWRIGSVARASWDHRSLSTRPTGARANGAVAPGEDRDVAGPYAYQTGAIGDRRAQQQLDAQRVAALRSEGRSTR RDLRPGLRFAIAHHPTLGVSDAFICLRVEHSARANVDATVRSAIEQRLGAIASIAGAAPVPHGPASALNAALGADTHHGG SLMRDDAVYRNRFVALPAEQTYRPLAASGHGARMHPVAVMPGAQTAIVVGAGDPVHTDRDHRIRIQHHAQRGENAASRDD HPHAANAPANRGAGTWTRMMTPVGGDNWGGVSVPRVGQEVWTEWLEGQPDRPVAVAALYNGRGNAHAQHNAQAGGPSGST GNAAAWFAGNAHAAVLTGFKTQDMSMSQQGTGGYRQFMLDDTAGQSSARLYTTDRNSGLTLGHVKQTQDNRRQADRGYGA ELATDAAGALRGGAGLLISTAPGVSQMDASAPSQVLAQHRQTLQSLAALAHKQGAEPGGAVPEAAGGAGAASASTGAAAD KPLPAVDGIEQSREAIGATREGSGGDTAGGGGGGAIAWSKPHLVAHGEAGLAAMSAKSHVWVSGTETVLSAGQDVQLTAK GKTSVVANHGISLYTQGAAGDGRPVAGRGIALHAASGAVSMQAQNAGKLSASAQKAVTLASAQGSASVQAQQRVLLSAAK AYLKMEGNDIVVGAPGRADFKAAAHQLTGPKSAGAQSTLGKGASRDCPQTMGDMISSSAAFADL
Sequences:
>Translated_944_residues MSIPTDVLQALFGGWSQHDRFLWITTPLGANALVAESLHGWEALDDGGFRLQLTALAEHPSLPLAQLIGAPILIEWQAQE GRDARRPFHGHVIAAELVGYNGGLARVRLVVEPWLTLLRQRVDSYNYLDASVVEISEQVFRRYARGAIAPAWRWALADAA KYPKRSLTAQAGESDFDFLERLWAEEGIFYWFEHEGDARASSLGKHTLVLADSNQRFAPDEPEIVGFHQTSDDDPQGCIQ HFMHARRWRIGSVARASWDHRSLSTRPTGARANGAVAPGEDRDVAGPYAYQTGAIGDRRAQQQLDAQRVAALRSEGRSTR RDLRPGLRFAIAHHPTLGVSDAFICLRVEHSARANVDATVRSAIEQRLGAIASIAGAAPVPHGPASALNAALGADTHHGG SLMRDDAVYRNRFVALPAEQTYRPLAASGHGARMHPVAVMPGAQTAIVVGAGDPVHTDRDHRIRIQHHAQRGENAASRDD HPHAANAPANRGAGTWTRMMTPVGGDNWGGVSVPRVGQEVWTEWLEGQPDRPVAVAALYNGRGNAHAQHNAQAGGPSGST GNAAAWFAGNAHAAVLTGFKTQDMSMSQQGTGGYRQFMLDDTAGQSSARLYTTDRNSGLTLGHVKQTQDNRRQADRGYGA ELATDAAGALRGGAGLLISTAPGVSQMDASAPSQVLAQHRQTLQSLAALAHKQGAEPGGAVPEAAGGAGAASASTGAAAD KPLPAVDGIEQSREAIGATREGSGGDTAGGGGGGAIAWSKPHLVAHGEAGLAAMSAKSHVWVSGTETVLSAGQDVQLTAK GKTSVVANHGISLYTQGAAGDGRPVAGRGIALHAASGAVSMQAQNAGKLSASAQKAVTLASAQGSASVQAQQRVLLSAAK AYLKMEGNDIVVGAPGRADFKAAAHQLTGPKSAGAQSTLGKGASRDCPQTMGDMISSSAAFADL >Mature_943_residues SIPTDVLQALFGGWSQHDRFLWITTPLGANALVAESLHGWEALDDGGFRLQLTALAEHPSLPLAQLIGAPILIEWQAQEG RDARRPFHGHVIAAELVGYNGGLARVRLVVEPWLTLLRQRVDSYNYLDASVVEISEQVFRRYARGAIAPAWRWALADAAK YPKRSLTAQAGESDFDFLERLWAEEGIFYWFEHEGDARASSLGKHTLVLADSNQRFAPDEPEIVGFHQTSDDDPQGCIQH FMHARRWRIGSVARASWDHRSLSTRPTGARANGAVAPGEDRDVAGPYAYQTGAIGDRRAQQQLDAQRVAALRSEGRSTRR DLRPGLRFAIAHHPTLGVSDAFICLRVEHSARANVDATVRSAIEQRLGAIASIAGAAPVPHGPASALNAALGADTHHGGS LMRDDAVYRNRFVALPAEQTYRPLAASGHGARMHPVAVMPGAQTAIVVGAGDPVHTDRDHRIRIQHHAQRGENAASRDDH PHAANAPANRGAGTWTRMMTPVGGDNWGGVSVPRVGQEVWTEWLEGQPDRPVAVAALYNGRGNAHAQHNAQAGGPSGSTG NAAAWFAGNAHAAVLTGFKTQDMSMSQQGTGGYRQFMLDDTAGQSSARLYTTDRNSGLTLGHVKQTQDNRRQADRGYGAE LATDAAGALRGGAGLLISTAPGVSQMDASAPSQVLAQHRQTLQSLAALAHKQGAEPGGAVPEAAGGAGAASASTGAAADK PLPAVDGIEQSREAIGATREGSGGDTAGGGGGGAIAWSKPHLVAHGEAGLAAMSAKSHVWVSGTETVLSAGQDVQLTAKG KTSVVANHGISLYTQGAAGDGRPVAGRGIALHAASGAVSMQAQNAGKLSASAQKAVTLASAQGSASVQAQQRVLLSAAKA YLKMEGNDIVVGAPGRADFKAAAHQLTGPKSAGAQSTLGKGASRDCPQTMGDMISSSAAFADL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 98684; Mature: 98552
Theoretical pI: Translated: 7.81; Mature: 7.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIPTDVLQALFGGWSQHDRFLWITTPLGANALVAESLHGWEALDDGGFRLQLTALAEHP CCCCHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHCCCCCEECCCCCEEEEEEECCCC SLPLAQLIGAPILIEWQAQEGRDARRPFHGHVIAAELVGYNGGLARVRLVVEPWLTLLRQ CCCHHHHCCCCEEEEEECCCCCHHCCCCCCCEEEEEEECCCCCHHEEEEHHHHHHHHHHH RVDSYNYLDASVVEISEQVFRRYARGAIAPAWRWALADAAKYPKRSLTAQAGESDFDFLE HHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHH RLWAEEGIFYWFEHEGDARASSLGKHTLVLADSNQRFAPDEPEIVGFHQTSDDDPQGCIQ HHHHCCCEEEEEECCCCCHHHCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCHHHHHH HFMHARRWRIGSVARASWDHRSLSTRPTGARANGAVAPGEDRDVAGPYAYQTGAIGDRRA HHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH QQQLDAQRVAALRSEGRSTRRDLRPGLRFAIAHHPTLGVSDAFICLRVEHSARANVDATV HHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCHHHH RSAIEQRLGAIASIAGAAPVPHGPASALNAALGADTHHGGSLMRDDAVYRNRFVALPAEQ HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHCEEEECCCHH TYRPLAASGHGARMHPVAVMPGAQTAIVVGAGDPVHTDRDHRIRIQHHAQRGENAASRDD HCCCCCCCCCCCEECCEEEECCCCEEEEEECCCCCCCCCCCEEEEEEHHHCCCCCCCCCC HPHAANAPANRGAGTWTRMMTPVGGDNWGGVSVPRVGQEVWTEWLEGQPDRPVAVAALYN CCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEC GRGNAHAQHNAQAGGPSGSTGNAAAWFAGNAHAAVLTGFKTQDMSMSQQGTGGYRQFMLD CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEE DTAGQSSARLYTTDRNSGLTLGHVKQTQDNRRQADRGYGAELATDAAGALRGGAGLLIST CCCCCCCCEEEEECCCCCCEEEECHHCHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEC APGVSQMDASAPSQVLAQHRQTLQSLAALAHKQGAEPGGAVPEAAGGAGAASASTGAAAD CCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC KPLPAVDGIEQSREAIGATREGSGGDTAGGGGGGAIAWSKPHLVAHGEAGLAAMSAKSHV CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCEEEECCCCEEEECCCCEE WVSGTETVLSAGQDVQLTAKGKTSVVANHGISLYTQGAAGDGRPVAGRGIALHAASGAVS EECCCHHHHHCCCCEEEEECCCEEEEEECCEEEEECCCCCCCCCCCCCCEEEEECCCEEE MQAQNAGKLSASAQKAVTLASAQGSASVQAQQRVLLSAAKAYLKMEGNDIVVGAPGRADF EECCCCCCCCCCHHHHEEEECCCCCCHHHHHHHHHHHHHHHHEEECCCEEEEECCCCCHH KAAAHQLTGPKSAGAQSTLGKGASRDCPQTMGDMISSSAAFADL HHHHHHCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHCCCHHCCC >Mature Secondary Structure SIPTDVLQALFGGWSQHDRFLWITTPLGANALVAESLHGWEALDDGGFRLQLTALAEHP CCCHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHCCCCCEECCCCCEEEEEEECCCC SLPLAQLIGAPILIEWQAQEGRDARRPFHGHVIAAELVGYNGGLARVRLVVEPWLTLLRQ CCCHHHHCCCCEEEEEECCCCCHHCCCCCCCEEEEEEECCCCCHHEEEEHHHHHHHHHHH RVDSYNYLDASVVEISEQVFRRYARGAIAPAWRWALADAAKYPKRSLTAQAGESDFDFLE HHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHH RLWAEEGIFYWFEHEGDARASSLGKHTLVLADSNQRFAPDEPEIVGFHQTSDDDPQGCIQ HHHHCCCEEEEEECCCCCHHHCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCHHHHHH HFMHARRWRIGSVARASWDHRSLSTRPTGARANGAVAPGEDRDVAGPYAYQTGAIGDRRA HHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH QQQLDAQRVAALRSEGRSTRRDLRPGLRFAIAHHPTLGVSDAFICLRVEHSARANVDATV HHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCHHHH RSAIEQRLGAIASIAGAAPVPHGPASALNAALGADTHHGGSLMRDDAVYRNRFVALPAEQ HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHCEEEECCCHH TYRPLAASGHGARMHPVAVMPGAQTAIVVGAGDPVHTDRDHRIRIQHHAQRGENAASRDD HCCCCCCCCCCCEECCEEEECCCCEEEEEECCCCCCCCCCCEEEEEEHHHCCCCCCCCCC HPHAANAPANRGAGTWTRMMTPVGGDNWGGVSVPRVGQEVWTEWLEGQPDRPVAVAALYN CCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEC GRGNAHAQHNAQAGGPSGSTGNAAAWFAGNAHAAVLTGFKTQDMSMSQQGTGGYRQFMLD CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEE DTAGQSSARLYTTDRNSGLTLGHVKQTQDNRRQADRGYGAELATDAAGALRGGAGLLIST CCCCCCCCEEEEECCCCCCEEEECHHCHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEC APGVSQMDASAPSQVLAQHRQTLQSLAALAHKQGAEPGGAVPEAAGGAGAASASTGAAAD CCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC KPLPAVDGIEQSREAIGATREGSGGDTAGGGGGGAIAWSKPHLVAHGEAGLAAMSAKSHV CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCEEEECCCCEEEECCCCEE WVSGTETVLSAGQDVQLTAKGKTSVVANHGISLYTQGAAGDGRPVAGRGIALHAASGAVS EECCCHHHHHCCCCEEEEECCCEEEEEECCEEEEECCCCCCCCCCCCCCEEEEECCCEEE MQAQNAGKLSASAQKAVTLASAQGSASVQAQQRVLLSAAKAYLKMEGNDIVVGAPGRADF EECCCCCCCCCCHHHHEEEECCCCCCHHHHHHHHHHHHHHHHEEECCCEEEEECCCCCHH KAAAHQLTGPKSAGAQSTLGKGASRDCPQTMGDMISSSAAFADL HHHHHHCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA