| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is 237811871
Identifier: 237811871
GI number: 237811871
Start: 1547770
End: 1548267
Strand: Reverse
Name: 237811871
Synonym: GBP346_A1611
Alternate gene names: NA
Gene position: 1548267-1547770 (Counterclockwise)
Preceding gene: 237811872
Following gene: 237811870
Centisome position: 37.78
GC content: 76.51
Gene sequence:
>498_bases ATGTCCATCGCTTCCCCGGTTCGGCCGCCGCGGCGCCGCGTCGCGCGCGCGCTCGTGCTCGCCGCCTTCGTCGCGCTAGC CGCGCTCGGCGGCACGGCACGCGCGTCGCCCGACGATGCGCCCGCCGCGCCCGCCGCGCCCGCCGCACGCGGCGCGCGGC TGTTCGACGGCAGCGATCCGATGCATGGCCGCCTCGCGGGCCACGCGCAAGTGCTGCCGTCGACGGCGAGCCGCTGCGCG AACTGCCACCAGCCGCCGGCGCCGCGCGCGGCGCCGGCGCTCGCCCCGCCGCTCGACGCGTCGAGCCTGCTCGCGCCGCA AAAGCGGCGCGGCGGCCCGCCGTCCGCCTATACGGCCGACAGCTTCTGCGCGACGCTGCGAAGCGGCATCGATCCGGCCC ACGTCACGCTGAAAGCCGCGATGCCGCGCTACGACGCGACCGACGCGCAATGCGCGGACCTGTGGGCCTTCCTGATTCCG ATACCGACATCACGTTGA
Upstream 100 bases:
>100_bases GGCAGTACATGCTGTTCGCGCTGAACGCGGGGGGCGTGCCGAGCGTCGCGAAGACGATCCGGATCGGCGCCTGAAGGCGA GAAGGCAAGGAGCGCGAACG
Downstream 100 bases:
>100_bases GATGAACCCTCCATCCCTGATCCGGCGCCGCCTCGTGCTCGCCGGCGCCGCCCTCGTCTCGCTTCCGGCATGCGCGGCCG AATCGCGCGAGATCGCGCAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 165; Mature: 164
Protein sequence:
>165_residues MSIASPVRPPRRRVARALVLAAFVALAALGGTARASPDDAPAAPAAPAARGARLFDGSDPMHGRLAGHAQVLPSTASRCA NCHQPPAPRAAPALAPPLDASSLLAPQKRRGGPPSAYTADSFCATLRSGIDPAHVTLKAAMPRYDATDAQCADLWAFLIP IPTSR
Sequences:
>Translated_165_residues MSIASPVRPPRRRVARALVLAAFVALAALGGTARASPDDAPAAPAAPAARGARLFDGSDPMHGRLAGHAQVLPSTASRCA NCHQPPAPRAAPALAPPLDASSLLAPQKRRGGPPSAYTADSFCATLRSGIDPAHVTLKAAMPRYDATDAQCADLWAFLIP IPTSR >Mature_164_residues SIASPVRPPRRRVARALVLAAFVALAALGGTARASPDDAPAAPAAPAARGARLFDGSDPMHGRLAGHAQVLPSTASRCAN CHQPPAPRAAPALAPPLDASSLLAPQKRRGGPPSAYTADSFCATLRSGIDPAHVTLKAAMPRYDATDAQCADLWAFLIPI PTSR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16927; Mature: 16795
Theoretical pI: Translated: 10.82; Mature: 10.82
Prosite motif: PS51007 CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIASPVRPPRRRVARALVLAAFVALAALGGTARASPDDAPAAPAAPAARGARLFDGSDP CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC MHGRLAGHAQVLPSTASRCANCHQPPAPRAAPALAPPLDASSLLAPQKRRGGPPSAYTAD CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCHHHCCCCCCCCCHH SFCATLRSGIDPAHVTLKAAMPRYDATDAQCADLWAFLIPIPTSR HHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCC >Mature Secondary Structure SIASPVRPPRRRVARALVLAAFVALAALGGTARASPDDAPAAPAAPAARGARLFDGSDP CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC MHGRLAGHAQVLPSTASRCANCHQPPAPRAAPALAPPLDASSLLAPQKRRGGPPSAYTAD CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCHHHCCCCCCCCCHH SFCATLRSGIDPAHVTLKAAMPRYDATDAQCADLWAFLIPIPTSR HHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA