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The map label for this gene is ybcM [C]

Identifier: 237811769

GI number: 237811769

Start: 1443102

End: 1444157

Strand: Direct

Name: ybcM [C]

Synonym: GBP346_A1507

Alternate gene names: 237811769

Gene position: 1443102-1444157 (Clockwise)

Preceding gene: 237811768

Following gene: 237811771

Centisome position: 35.21

GC content: 69.89

Gene sequence:

>1056_bases
ATGTTGGGCGCGTTCCGAACATTTGAGGCCATCTTGACCGCCAAGCTCGCCCACTGGGATTTCGTCCGGCCTGTCGCGAC
GACGCGCGTGCTCGTCGACGTGGGCGTCGAGCAGGGGCTCGCCGTCGGACAGTGCCTGGGCGGCAGCGGTGTCTGCGCCG
ATCTGCTCGACAAGCCGGACGCCACCGTCGCCGCCGCGCAGGAACTGCGCATCGTTCGCAATCTGATGCGGCTGCTGGGG
CCGGACTTTCCGCTCGGCATCGAGATCGGCCGGCGCTATCACGCGACCGCCTATGGCGTCTGGGGTTTCGCGCTGATGAG
CAGCGCGACGTTCGGCGACGCCGTGTCGGTCGGCTTGCGCTATCTTCAATTGACGTCGACCTTCTGCGAGATCCGGCCGA
CGCTGCGCGGCGACGACGCGACGCTCGTGATCGACGACCGCGACCTGCCCGGCGACGTGCGCGACGTGCTGGTCGAAATC
ACGGTGGCCGCGTTGATCACGCTGCAATTCGATCTCGACGCGGCGAACTTGCCGGTCAAGCGTCTGGCGCTCAAGATGAA
GCCGCCGTCGTACGCCGGCCGCTTCCAGACGCTGTTCGACGCGACGCCCGAATTCGGCGCGGCGCACAATGCGCTGACGG
TGGACGCGCGCTGTCTCGACCTGAAGCTGCCGCAGCGCAACGCGCTGACGCGGCGGCGGTGCGAGGACGAGTGCCGCCGC
GTGCTCGAGCGCCATCGTCGCAGCGAAGGCTGGGCGGGGCGCGTGCGCCGGCAGTTGGCCGGCGATCCGGCGCGCGGCCC
GACGATGGACGTGCTCGCGGCCGAGCTGGGCTTGAGCCCGCGCACATTGCGGCGGCGGCTCGCGAACGAGGGGACGGATT
ACGAGACGGTCGCCGACGAGCTTCGCCAAGCGCTGGCCGAGGCGCTGCTCGCGACGACGACGTTGACGCTCGCCGAGGTG
TCGGAGCGGCTCGGCTATTCGGAGCCATCCGCGTTCGCGCGCGCGTTCAGGCGCTGGAAGGGGATGTCGCCGAGCGAATA
CCGGCGCGCGGCGTGA

Upstream 100 bases:

>100_bases
CGGCAGGGCGTCCGGCCTCGCGGCCGCGGCTCGCCGGTCGCGCACGCCCATAATCGGGCGTGCGGGAAAGATCGCATTGA
GCGTTACATTGAGCAATGGC

Downstream 100 bases:

>100_bases
GTGGAAAGGGCGCCGCGCGCCGGTCGTCCGCGTCCGGCGCATGAGCGGGGCGCGCCCGCCGTGCGTCGCGCACCCCGGCG
GGGCGCGAGTCCGCACGGGG

Product: transcriptional regulator, AraC family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 351

Protein sequence:

>351_residues
MLGAFRTFEAILTAKLAHWDFVRPVATTRVLVDVGVEQGLAVGQCLGGSGVCADLLDKPDATVAAAQELRIVRNLMRLLG
PDFPLGIEIGRRYHATAYGVWGFALMSSATFGDAVSVGLRYLQLTSTFCEIRPTLRGDDATLVIDDRDLPGDVRDVLVEI
TVAALITLQFDLDAANLPVKRLALKMKPPSYAGRFQTLFDATPEFGAAHNALTVDARCLDLKLPQRNALTRRRCEDECRR
VLERHRRSEGWAGRVRRQLAGDPARGPTMDVLAAELGLSPRTLRRRLANEGTDYETVADELRQALAEALLATTTLTLAEV
SERLGYSEPSAFARAFRRWKGMSPSEYRRAA

Sequences:

>Translated_351_residues
MLGAFRTFEAILTAKLAHWDFVRPVATTRVLVDVGVEQGLAVGQCLGGSGVCADLLDKPDATVAAAQELRIVRNLMRLLG
PDFPLGIEIGRRYHATAYGVWGFALMSSATFGDAVSVGLRYLQLTSTFCEIRPTLRGDDATLVIDDRDLPGDVRDVLVEI
TVAALITLQFDLDAANLPVKRLALKMKPPSYAGRFQTLFDATPEFGAAHNALTVDARCLDLKLPQRNALTRRRCEDECRR
VLERHRRSEGWAGRVRRQLAGDPARGPTMDVLAAELGLSPRTLRRRLANEGTDYETVADELRQALAEALLATTTLTLAEV
SERLGYSEPSAFARAFRRWKGMSPSEYRRAA
>Mature_351_residues
MLGAFRTFEAILTAKLAHWDFVRPVATTRVLVDVGVEQGLAVGQCLGGSGVCADLLDKPDATVAAAQELRIVRNLMRLLG
PDFPLGIEIGRRYHATAYGVWGFALMSSATFGDAVSVGLRYLQLTSTFCEIRPTLRGDDATLVIDDRDLPGDVRDVLVEI
TVAALITLQFDLDAANLPVKRLALKMKPPSYAGRFQTLFDATPEFGAAHNALTVDARCLDLKLPQRNALTRRRCEDECRR
VLERHRRSEGWAGRVRRQLAGDPARGPTMDVLAAELGLSPRTLRRRLANEGTDYETVADELRQALAEALLATTTLTLAEV
SERLGYSEPSAFARAFRRWKGMSPSEYRRAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 38655; Mature: 38655

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGAFRTFEAILTAKLAHWDFVRPVATTRVLVDVGVEQGLAVGQCLGGSGVCADLLDKPD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCHHHHHCCCCCCHHHHHCCCC
ATVAAAQELRIVRNLMRLLGPDFPLGIEIGRRYHATAYGVWGFALMSSATFGDAVSVGLR
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
YLQLTSTFCEIRPTLRGDDATLVIDDRDLPGDVRDVLVEITVAALITLQFDLDAANLPVK
HHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHEEECCCCCCCCHH
RLALKMKPPSYAGRFQTLFDATPEFGAAHNALTVDARCLDLKLPQRNALTRRRCEDECRR
HHEEECCCCCHHHHHHHHHHCCCCCCCCCCCEEECCEEEEEECCCHHHHHHHHHHHHHHH
VLERHRRSEGWAGRVRRQLAGDPARGPTMDVLAAELGLSPRTLRRRLANEGTDYETVADE
HHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHH
LRQALAEALLATTTLTLAEVSERLGYSEPSAFARAFRRWKGMSPSEYRRAA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHCCC
>Mature Secondary Structure
MLGAFRTFEAILTAKLAHWDFVRPVATTRVLVDVGVEQGLAVGQCLGGSGVCADLLDKPD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCHHHHHCCCCCCHHHHHCCCC
ATVAAAQELRIVRNLMRLLGPDFPLGIEIGRRYHATAYGVWGFALMSSATFGDAVSVGLR
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
YLQLTSTFCEIRPTLRGDDATLVIDDRDLPGDVRDVLVEITVAALITLQFDLDAANLPVK
HHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHEEECCCCCCCCHH
RLALKMKPPSYAGRFQTLFDATPEFGAAHNALTVDARCLDLKLPQRNALTRRRCEDECRR
HHEEECCCCCHHHHHHHHHHCCCCCCCCCCCEEECCEEEEEECCCHHHHHHHHHHHHHHH
VLERHRRSEGWAGRVRRQLAGDPARGPTMDVLAAELGLSPRTLRRRLANEGTDYETVADE
HHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHH
LRQALAEALLATTTLTLAEVSERLGYSEPSAFARAFRRWKGMSPSEYRRAA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036; 12368430 [H]