| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
Click here to switch to the map view.
The map label for this gene is yjjL [C]
Identifier: 237811766
GI number: 237811766
Start: 1440420
End: 1441658
Strand: Direct
Name: yjjL [C]
Synonym: GBP346_A1504
Alternate gene names: 237811766
Gene position: 1440420-1441658 (Clockwise)
Preceding gene: 237811765
Following gene: 237811768
Centisome position: 35.14
GC content: 69.98
Gene sequence:
>1239_bases GTGATCGTGATGTCCCTCATGCAATTTCGCGTGTTCGCGCTGTTCGCGATCGGCTATTTCGTTTCGTACGTCTTTCGCGG CGTGAATCTCGGCTTCGCGCCGCTCATCACGCGCGAGCTCGGCCTGTCCGCCGCCGATCTCGGGCTGCTGACGAGCCTTT ACTTTCTTGGTTTCGCGTGCGCGCAGATTCCGGCCGGCGTGCTGCTCGACCGCTACGGCCCGCGTCGCGTGAGCGCCGCG CTTCTGCTCGTCGCGGCGGCGGGCGCATGGGTGTTCGGCGCCGCGCACGACATCGGCGCGATGATGCTCGGGCGTCTTCT GATCGGCGTCGGCGTGTCGGTGTGCCTGGGCGGCGCGTTCAAGGCGCTCGCGCAGCATTTCCCGGTCGCGAGGCTGCCGC TTCTGAACGGCTTCGTGATGGCGGTGGGCGGGCTGGGCGGCGTCGCGGTCGGCTCGCCGCTCGATTGGCTGCTTGGCTTC GCCGGCTGGCGCGCGGTGTGCGCGGGGCTCGGCGCGTTCACGGTGGCGGTCGCGGCCGCGTTGTGGGCGTTCGCCCCCGA TGCGCGGCAGAGCCGTCACGACGCGAGCGTCGCCGCGCAATTCGCGGGCACCTGGCGAATCGTCACGAACCGCACGTTCT GGAAGATCGCGTCGTTTTCGGTCGTCACGCAGGGCGTGTTCTACGCGATGCAATCGCTGTGGGTCGGCGCGTATCTGCGC GACGTGAGCGGCTTCGCGCCGCGCGACGCGGCCGTGCTCGTGTCCGTGCTCGGCTTCGCGATGATGGCGGGCTGCGTCGG CTTCGGCGCGGCGGCGCGCGGGCTCGAGCGGCGCGGCATGTCGCTGTATGCGTTCTGCGGGTTCGGGATGGCGCTCTTCG TCGCGACCCAGCTCGCGATCATGCTGCGCGCGCCGCTGCCCGCCGCGGTGCTGTGGGCGGCGTACGGCGTGTTCGGCGGC GTCGGCATCCTGAGCTACGCCGTGCTCGCCGAATATTTCCCCGTGCACGTGATCGGCCGTGCGAACACGACGCTCACGCT CGTCATCTTCGTGCTGATCTTCGGATTCCAGGTGGGCGTGGGCGCGGTGCTGTCGCATTGGCCGATGCGGGCCGGGCATT ATCCGGCCGAGGCGCATTTGAGCGCGTGGGGCGCGCTCGTCGCGCTGCAGATTGCGAGCGCGGTCTGGTACGTGCTGCCC GATCGCGCGCTCGACAAGTCCGCCCGGCACGCGGGGTGA
Upstream 100 bases:
>100_bases GCCGGCGACGCGCGATCGACTATCATCGCCGGACGCCGTCACCTGGGTGACGGCGTTTTCGTTTGCGCGCGCCGCCGGTT CGTCGGCCGGCGTCTTACCG
Downstream 100 bases:
>100_bases TTCGCGTCACGCCCGTCGCGGCGGCGCGCGGGCGTCGGCCGGCCGCGCGCCGCGATCGCCGGCGTGGCGCGGCGACGGGC GTCGGCGCGCGCGTCGCCGT
Product: major facilitator family transporter
Products: NA
Alternate protein names: Facilitator Superfamily Transporter; Facilitator Superfamily Protein; Facilitator Family Transporter; Transporter MFS Superfamily; Carbohydrate Transport Membrane Protein; MFS Family Transporter; Facilitator Superfamily Permease
Number of amino acids: Translated: 412; Mature: 412
Protein sequence:
>412_residues MIVMSLMQFRVFALFAIGYFVSYVFRGVNLGFAPLITRELGLSAADLGLLTSLYFLGFACAQIPAGVLLDRYGPRRVSAA LLLVAAAGAWVFGAAHDIGAMMLGRLLIGVGVSVCLGGAFKALAQHFPVARLPLLNGFVMAVGGLGGVAVGSPLDWLLGF AGWRAVCAGLGAFTVAVAAALWAFAPDARQSRHDASVAAQFAGTWRIVTNRTFWKIASFSVVTQGVFYAMQSLWVGAYLR DVSGFAPRDAAVLVSVLGFAMMAGCVGFGAAARGLERRGMSLYAFCGFGMALFVATQLAIMLRAPLPAAVLWAAYGVFGG VGILSYAVLAEYFPVHVIGRANTTLTLVIFVLIFGFQVGVGAVLSHWPMRAGHYPAEAHLSAWGALVALQIASAVWYVLP DRALDKSARHAG
Sequences:
>Translated_412_residues MIVMSLMQFRVFALFAIGYFVSYVFRGVNLGFAPLITRELGLSAADLGLLTSLYFLGFACAQIPAGVLLDRYGPRRVSAA LLLVAAAGAWVFGAAHDIGAMMLGRLLIGVGVSVCLGGAFKALAQHFPVARLPLLNGFVMAVGGLGGVAVGSPLDWLLGF AGWRAVCAGLGAFTVAVAAALWAFAPDARQSRHDASVAAQFAGTWRIVTNRTFWKIASFSVVTQGVFYAMQSLWVGAYLR DVSGFAPRDAAVLVSVLGFAMMAGCVGFGAAARGLERRGMSLYAFCGFGMALFVATQLAIMLRAPLPAAVLWAAYGVFGG VGILSYAVLAEYFPVHVIGRANTTLTLVIFVLIFGFQVGVGAVLSHWPMRAGHYPAEAHLSAWGALVALQIASAVWYVLP DRALDKSARHAG >Mature_412_residues MIVMSLMQFRVFALFAIGYFVSYVFRGVNLGFAPLITRELGLSAADLGLLTSLYFLGFACAQIPAGVLLDRYGPRRVSAA LLLVAAAGAWVFGAAHDIGAMMLGRLLIGVGVSVCLGGAFKALAQHFPVARLPLLNGFVMAVGGLGGVAVGSPLDWLLGF AGWRAVCAGLGAFTVAVAAALWAFAPDARQSRHDASVAAQFAGTWRIVTNRTFWKIASFSVVTQGVFYAMQSLWVGAYLR DVSGFAPRDAAVLVSVLGFAMMAGCVGFGAAARGLERRGMSLYAFCGFGMALFVATQLAIMLRAPLPAAVLWAAYGVFGG VGILSYAVLAEYFPVHVIGRANTTLTLVIFVLIFGFQVGVGAVLSHWPMRAGHYPAEAHLSAWGALVALQIASAVWYVLP DRALDKSARHAG
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43367; Mature: 43367
Theoretical pI: Translated: 10.05; Mature: 10.05
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIVMSLMQFRVFALFAIGYFVSYVFRGVNLGFAPLITRELGLSAADLGLLTSLYFLGFAC CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH AQIPAGVLLDRYGPRRVSAALLLVAAAGAWVFGAAHDIGAMMLGRLLIGVGVSVCLGGAF HHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KALAQHFPVARLPLLNGFVMAVGGLGGVAVGSPLDWLLGFAGWRAVCAGLGAFTVAVAAA HHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LWAFAPDARQSRHDASVAAQFAGTWRIVTNRTFWKIASFSVVTQGVFYAMQSLWVGAYLR HHHCCCCHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DVSGFAPRDAAVLVSVLGFAMMAGCVGFGAAARGLERRGMSLYAFCGFGMALFVATQLAI HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHH MLRAPLPAAVLWAAYGVFGGVGILSYAVLAEYFPVHVIGRANTTLTLVIFVLIFGFQVGV HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHH GAVLSHWPMRAGHYPAEAHLSAWGALVALQIASAVWYVLPDRALDKSARHAG HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCC >Mature Secondary Structure MIVMSLMQFRVFALFAIGYFVSYVFRGVNLGFAPLITRELGLSAADLGLLTSLYFLGFAC CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH AQIPAGVLLDRYGPRRVSAALLLVAAAGAWVFGAAHDIGAMMLGRLLIGVGVSVCLGGAF HHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KALAQHFPVARLPLLNGFVMAVGGLGGVAVGSPLDWLLGFAGWRAVCAGLGAFTVAVAAA HHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LWAFAPDARQSRHDASVAAQFAGTWRIVTNRTFWKIASFSVVTQGVFYAMQSLWVGAYLR HHHCCCCHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DVSGFAPRDAAVLVSVLGFAMMAGCVGFGAAARGLERRGMSLYAFCGFGMALFVATQLAI HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHH MLRAPLPAAVLWAAYGVFGGVGILSYAVLAEYFPVHVIGRANTTLTLVIFVLIFGFQVGV HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHH GAVLSHWPMRAGHYPAEAHLSAWGALVALQIASAVWYVLPDRALDKSARHAG HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA