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The map label for this gene is ybaO [C]

Identifier: 237811716

GI number: 237811716

Start: 1399529

End: 1400023

Strand: Reverse

Name: ybaO [C]

Synonym: GBP346_A1454

Alternate gene names: 237811716

Gene position: 1400023-1399529 (Counterclockwise)

Preceding gene: 237811719

Following gene: 237811714

Centisome position: 34.16

GC content: 67.88

Gene sequence:

>495_bases
TTGGCCTACTCTCTCGACGAACTGGACCTTCGTATCCTCGCCGCGCTGCAGGCGGACGCGTCGCTGTCGAACCTGGCGCT
CGCCGAGCGCGCGCTCTCGTCGCCGCCTACCTGCATGCGGCGCGTGCGCAAGCTGACCGAGGCCGGCATCATTGAGCGCC
GGATCGCCGTCCTCGATCGCGGCAGGATCGGCACGAGCGTCACCGCGATCATCGAGATCGGCCTCGATCGGCAAACCGCC
GAGGATTACGACGCGTTCGAGGCATACGCCTGCGCGCAGCCGGAAGTCACGCAGTGCTACCGCGTGTCGCCCGGGCCCGA
CTTCGTCATCGTCGCGGATCTCGCCGACATGGCCGCGTATGACGAATTCGCGCGCCGGCTGTTCACGCATGCATCGAACG
TCCGCAACGTGCGGACCTTCTTCTCGACGCGTCGCGCGAAATTCGAAGCGAATGCGCCGGTGCGCGCCACGCCGGGCAAG
CGAGCGGGCGGCTGA

Upstream 100 bases:

>100_bases
AATGGAATTTAATTTCAAAAATATCGATTCTCTGAAATTTCCATATCATTCCATTTCGGCTTGAAATTAAATTTCAACCC
GCTCGCGCAAGGAGCAGCGC

Downstream 100 bases:

>100_bases
CGGCGTCGACCGAACGGAACCGCGCGCGCCAGCGGCGCCGCGCGCACGTGACGCGCCCGGCTTCCGCCGCGCGACATCCG
CGACATCCGCGACATCCGCG

Product: transcriptional regulator, AsnC family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 163

Protein sequence:

>164_residues
MAYSLDELDLRILAALQADASLSNLALAERALSSPPTCMRRVRKLTEAGIIERRIAVLDRGRIGTSVTAIIEIGLDRQTA
EDYDAFEAYACAQPEVTQCYRVSPGPDFVIVADLADMAAYDEFARRLFTHASNVRNVRTFFSTRRAKFEANAPVRATPGK
RAGG

Sequences:

>Translated_164_residues
MAYSLDELDLRILAALQADASLSNLALAERALSSPPTCMRRVRKLTEAGIIERRIAVLDRGRIGTSVTAIIEIGLDRQTA
EDYDAFEAYACAQPEVTQCYRVSPGPDFVIVADLADMAAYDEFARRLFTHASNVRNVRTFFSTRRAKFEANAPVRATPGK
RAGG
>Mature_163_residues
AYSLDELDLRILAALQADASLSNLALAERALSSPPTCMRRVRKLTEAGIIERRIAVLDRGRIGTSVTAIIEIGLDRQTAE
DYDAFEAYACAQPEVTQCYRVSPGPDFVIVADLADMAAYDEFARRLFTHASNVRNVRTFFSTRRAKFEANAPVRATPGKR
AGG

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=150, Percent_Identity=32, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI1787116, Length=143, Percent_Identity=29.3706293706294, Blast_Score=77, Evalue=7e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg [H]

EC number: NA

Molecular weight: Translated: 18027; Mature: 17895

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYSLDELDLRILAALQADASLSNLALAERALSSPPTCMRRVRKLTEAGIIERRIAVLDR
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
GRIGTSVTAIIEIGLDRQTAEDYDAFEAYACAQPEVTQCYRVSPGPDFVIVADLADMAAY
CCCCCHHEEHEEECCCCCCCHHHHHHHHHHCCCCCHHHEEECCCCCCEEEEECHHHHHHH
DEFARRLFTHASNVRNVRTFFSTRRAKFEANAPVRATPGKRAGG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCC
>Mature Secondary Structure 
AYSLDELDLRILAALQADASLSNLALAERALSSPPTCMRRVRKLTEAGIIERRIAVLDR
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
GRIGTSVTAIIEIGLDRQTAEDYDAFEAYACAQPEVTQCYRVSPGPDFVIVADLADMAAY
CCCCCHHEEHEEECCCCCCCHHHHHHHHHHCCCCCHHHEEECCCCCCEEEEECHHHHHHH
DEFARRLFTHASNVRNVRTFFSTRRAKFEANAPVRATPGKRAGG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]