Click here to switch to the map view.

The map label for this gene is yjcC [C]

Identifier: 237811676

GI number: 237811676

Start: 1366542

End: 1367825

Strand: Reverse

Name: yjcC [C]

Synonym: GBP346_A1413

Alternate gene names: 237811676

Gene position: 1367825-1366542 (Counterclockwise)

Preceding gene: 237811677

Following gene: 237811671

Centisome position: 33.37

GC content: 68.85

Gene sequence:

>1284_bases
ATGCCGAAAACGCAAGGGTTCTCGCCCGAAAGCCTGATTTCGCAGTTCACCCGCTGCGACGCAGGCTGGTGTGTGCGATA
TCACGACGTCACCCTTGCCAGCGCCTTTCAGCCGGTCATCTCGATCACGCACAAGCGCGTCGTCGGCTATGAGGCGCTCG
CCCGCGCGACCGACGCGAACGGCGCGCCGATTTCGCCCGACACGCTGTTCGCGCGTGCGCAGGCGCGCGGCGAGACGATC
CTGCTCGATCGGCTGACCCGGTGCCTGCACGTCGCGAACTTCGCCGCGCAGGACACGGGCGCGTGCTGGCTGTTCCTGAA
CGTGCTGCCGCAGATGTTCGACGCCGGCATCGCGCCGGGCGCGTTCATCGAGGCGCTTTGCGCGCACTTCGCGCTGCCGC
CGACGCGCGTCGTGCTCGAAGTGATCGAGCAGCCGTCGCGCAACGAGGTCGCGCTCGCCCGCACGATCGACATGATCCAG
CACGGCGACTTCCTGATCGCGGTCGACGATTTCGGCACCGGCTTCTCGAACTTCGACCGCATCTGGCAGATCAAGCCCGA
CATCGTGAAGCTCGACCGCTCGATCCTCGAGCGCTCGCTCGCGGCAAGCGACGCGCATCGGATCATTCATCATCTCGTCA
CGATGCTGCATCACGCGGGCACGATGGTGCTCGCGGAGGGCGTCGAAAACGAAGACGCGCTGCAGATCCTGATGGACGCC
GACGTCGATTTCGTGCAGGGCTTCTGCTTCGGCCGGCCCGCCCCGTCGCTCGAGCACGCGCGCCGCGCCGCGCCGGCGCG
CATCGAGGCCGCGTGGCGGCGCTTCGCCGAGCGCACGAAGGCACGGTGCGGCGACGTCGTGCATCCCGGCTTCGACACGA
TCGAGCGGATCATGCTCACGGGCGCCGCCGACTATGCGCAGACCCGAAACCTGCGCGACGCCGCGCAGCGGCTGCTGACG
AGCCCGATCGTGCGGCGCGTGTTCGTGGCGGAAGCGAACGGCGAGCAAGTGGAGCCATCGGTCACGATCGAGACGCCGGA
GGCGCCGAGCGCGACGGCGCGGCGGCTCGCGCCGCTGCTGCCCGAGCTGCACTGCAACTGGTCTCGGCGCGCGTACTTCC
AGCGCGCGATCGCGGCGCCCGGACGCGTCGCGCTGATGGGCCCGCACTTCTCGCTGACGGACGGCCGCGACTGCTACACG
GCCGCCGTCGCGATCCACCTCGGGACGACGCTGAAGGTGTTCTGCGTCGACTTCGACTTTTCGTCGTACGGGGACGGACG
CTAG

Upstream 100 bases:

>100_bases
ACGCGTTTCGTCTTTCTCCGCGTGGTTCTCATCAGCGCTCGCGCGCACGTCCGTCGCGCGCCGCGCGCCCTTTGCCGCTC
TTCGCGGCGACGCTGACAAC

Downstream 100 bases:

>100_bases
CGAGGCGGCAGGCGCGGCGAAAGCCCCGCGCATTGGCCGGCGCGCCGACTTCGGGTTGCGCGGCGGGCGTACCTTCGAGC
TGGCCGGACGGGGACATGCG

Product: cyclic diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 426

Protein sequence:

>427_residues
MPKTQGFSPESLISQFTRCDAGWCVRYHDVTLASAFQPVISITHKRVVGYEALARATDANGAPISPDTLFARAQARGETI
LLDRLTRCLHVANFAAQDTGACWLFLNVLPQMFDAGIAPGAFIEALCAHFALPPTRVVLEVIEQPSRNEVALARTIDMIQ
HGDFLIAVDDFGTGFSNFDRIWQIKPDIVKLDRSILERSLAASDAHRIIHHLVTMLHHAGTMVLAEGVENEDALQILMDA
DVDFVQGFCFGRPAPSLEHARRAAPARIEAAWRRFAERTKARCGDVVHPGFDTIERIMLTGAADYAQTRNLRDAAQRLLT
SPIVRRVFVAEANGEQVEPSVTIETPEAPSATARRLAPLLPELHCNWSRRAYFQRAIAAPGRVALMGPHFSLTDGRDCYT
AAVAIHLGTTLKVFCVDFDFSSYGDGR

Sequences:

>Translated_427_residues
MPKTQGFSPESLISQFTRCDAGWCVRYHDVTLASAFQPVISITHKRVVGYEALARATDANGAPISPDTLFARAQARGETI
LLDRLTRCLHVANFAAQDTGACWLFLNVLPQMFDAGIAPGAFIEALCAHFALPPTRVVLEVIEQPSRNEVALARTIDMIQ
HGDFLIAVDDFGTGFSNFDRIWQIKPDIVKLDRSILERSLAASDAHRIIHHLVTMLHHAGTMVLAEGVENEDALQILMDA
DVDFVQGFCFGRPAPSLEHARRAAPARIEAAWRRFAERTKARCGDVVHPGFDTIERIMLTGAADYAQTRNLRDAAQRLLT
SPIVRRVFVAEANGEQVEPSVTIETPEAPSATARRLAPLLPELHCNWSRRAYFQRAIAAPGRVALMGPHFSLTDGRDCYT
AAVAIHLGTTLKVFCVDFDFSSYGDGR
>Mature_426_residues
PKTQGFSPESLISQFTRCDAGWCVRYHDVTLASAFQPVISITHKRVVGYEALARATDANGAPISPDTLFARAQARGETIL
LDRLTRCLHVANFAAQDTGACWLFLNVLPQMFDAGIAPGAFIEALCAHFALPPTRVVLEVIEQPSRNEVALARTIDMIQH
GDFLIAVDDFGTGFSNFDRIWQIKPDIVKLDRSILERSLAASDAHRIIHHLVTMLHHAGTMVLAEGVENEDALQILMDAD
VDFVQGFCFGRPAPSLEHARRAAPARIEAAWRRFAERTKARCGDVVHPGFDTIERIMLTGAADYAQTRNLRDAAQRLLTS
PIVRRVFVAEANGEQVEPSVTIETPEAPSATARRLAPLLPELHCNWSRRAYFQRAIAAPGRVALMGPHFSLTDGRDCYTA
AVAIHLGTTLKVFCVDFDFSSYGDGR

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1790496, Length=231, Percent_Identity=25.5411255411255, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI87081845, Length=238, Percent_Identity=28.9915966386555, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788849, Length=230, Percent_Identity=25.2173913043478, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI87081743, Length=236, Percent_Identity=25.8474576271186, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI87081921, Length=231, Percent_Identity=24.6753246753247, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786507, Length=230, Percent_Identity=24.3478260869565, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI87082096, Length=221, Percent_Identity=26.6968325791855, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081980, Length=226, Percent_Identity=24.7787610619469, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI1788502, Length=231, Percent_Identity=25.974025974026, Blast_Score=72, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 47057; Mature: 46926

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKTQGFSPESLISQFTRCDAGWCVRYHDVTLASAFQPVISITHKRVVGYEALARATDAN
CCCCCCCCHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GAPISPDTLFARAQARGETILLDRLTRCLHVANFAAQDTGACWLFLNVLPQMFDAGIAPG
CCCCCHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCH
AFIEALCAHFALPPTRVVLEVIEQPSRNEVALARTIDMIQHGDFLIAVDDFGTGFSNFDR
HHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHH
IWQIKPDIVKLDRSILERSLAASDAHRIIHHLVTMLHHAGTMVLAEGVENEDALQILMDA
EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHC
DVDFVQGFCFGRPAPSLEHARRAAPARIEAAWRRFAERTKARCGDVVHPGFDTIERIMLT
CHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
GAADYAQTRNLRDAAQRLLTSPIVRRVFVAEANGEQVEPSVTIETPEAPSATARRLAPLL
CCHHHHHHCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCEEEEECCCCCCHHHHHHHHHH
PELHCNWSRRAYFQRAIAAPGRVALMGPHFSLTDGRDCYTAAVAIHLGTTLKVFCVDFDF
HHHCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHEECCEEEEEEEEECC
SSYGDGR
CCCCCCC
>Mature Secondary Structure 
PKTQGFSPESLISQFTRCDAGWCVRYHDVTLASAFQPVISITHKRVVGYEALARATDAN
CCCCCCCHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GAPISPDTLFARAQARGETILLDRLTRCLHVANFAAQDTGACWLFLNVLPQMFDAGIAPG
CCCCCHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCH
AFIEALCAHFALPPTRVVLEVIEQPSRNEVALARTIDMIQHGDFLIAVDDFGTGFSNFDR
HHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHH
IWQIKPDIVKLDRSILERSLAASDAHRIIHHLVTMLHHAGTMVLAEGVENEDALQILMDA
EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHC
DVDFVQGFCFGRPAPSLEHARRAAPARIEAAWRRFAERTKARCGDVVHPGFDTIERIMLT
CHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
GAADYAQTRNLRDAAQRLLTSPIVRRVFVAEANGEQVEPSVTIETPEAPSATARRLAPLL
CCHHHHHHCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCEEEEECCCCCCHHHHHHHHHH
PELHCNWSRRAYFQRAIAAPGRVALMGPHFSLTDGRDCYTAAVAIHLGTTLKVFCVDFDF
HHHCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHEECCEEEEEEEEECC
SSYGDGR
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]