| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is 237811614
Identifier: 237811614
GI number: 237811614
Start: 1294964
End: 1296118
Strand: Direct
Name: 237811614
Synonym: GBP346_A1346
Alternate gene names: NA
Gene position: 1294964-1296118 (Clockwise)
Preceding gene: 237811613
Following gene: 237811619
Centisome position: 31.6
GC content: 65.63
Gene sequence:
>1155_bases ATGACTCTCTCGATTACGAGCAATTTCGATGCGGGCGCGATCGACGTCGTATCGTGCGAGCGCGCGGACGCGATCCGGCT GCGCGTGCGCGGCGACAATCGCTCCGAATTCGCGCAGTGGTTCTACTTCCGGCTGACGGGCGCGCGCGGCGAGCGTTGCG TGATGACATTCGAGAACGCGAACGACTGCGCGTATCCGGCCGGCTGGCGCGACTATCGCGCGGTCGCGAGCTACGACCGG GTCAACTGGTTCCGCGTGCCGACGTCGTACGACGGGCAGATGCTGACGATCGACCATACGCCCGAATTCGACAGCATCCA TTACGCGTATTTCGAGCCGTACAGCGAAGAGCGCCATTCCGAATTTCTCGGCGCGGTGCAGCAGATGCCGCAGGCGAGTG TCGTCGAGCTGGGGCGCACGGTCGAAGGGCGGCCGATGTCGCTCGTCGTGCTCGGCACACCCGACGAAGCGGGCGCCGCG AAGAAGAAAGTGTGGATCATCGCGCGCCAGCATCCGGGCGAATCGATGGCGGAATGGTTTATCGAGGGGCTCGTGAAGCG GCTCGTCGGCTGGGGCGACTGGTCGGGCGATCCGGTCGCGCGCAAGCTGTACGACCATGCGACGTTCTACATCGTGCCGA ACATGAATCCGGACGGCAGCGTGCACGGCAACTTGCGCACGAACGCCGCCGGCGCGAACCTGAATCGCGAGTGGATGGAG CCGGATGCCGAGCGCAGCCCCGAAGTGCTCGTCGTGCGCGATGCGATCCACGCGATCGGCTGCGATCTGTTTTTCGACAT CCACGGCGACGAGGATCTGCCGTACGTGTTCGCGGCGGGCTCGGAGATGCTGCCCGGCTTCACCGAGCAGCAGCGCGTCG AGCAGAGCGCGTTCATCGATTCGTTCAAGCGCGCGAGCCCCGATTTCCAGGACGAGCACGGCTATCCGCCCGGCAAGTAC AGGGAGGACGCGCTCAAGCTCGCGTCGAAGTACATCGGCCATCGGTTCGGCTGCCTGTCGCTGACGCTCGAGATGCCGTT CAAGGACAACGCGAATCTGCCCGACGAGCACGTCGGCTGGAACGGCGCGCGCAGCGCGTCGCTCGGCGCGGCGATGCTGG GCGCGATCCTCGAGCACGTGCGGGCCTTTGCCTGA
Upstream 100 bases:
>100_bases AACGACGACACCTATGTGTTCCGCCGCCGGGCGGGCGCTTGAATAGGCGGCTATCGGCGTATTCGGCGGCCCGGCGCGGC CGCCGCAACCAGGAGATGCA
Downstream 100 bases:
>100_bases GCGCGGCCCGAGCGCTCGTCCCGGTGCGGTGGATACGCGCATCGGGTCTGCATGAAAAAGCCGGAGCGGCGTTGTCGCGC TCCGGCTTTTTTGCGTCGGG
Product: zinc carboxypeptidase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 384; Mature: 383
Protein sequence:
>384_residues MTLSITSNFDAGAIDVVSCERADAIRLRVRGDNRSEFAQWFYFRLTGARGERCVMTFENANDCAYPAGWRDYRAVASYDR VNWFRVPTSYDGQMLTIDHTPEFDSIHYAYFEPYSEERHSEFLGAVQQMPQASVVELGRTVEGRPMSLVVLGTPDEAGAA KKKVWIIARQHPGESMAEWFIEGLVKRLVGWGDWSGDPVARKLYDHATFYIVPNMNPDGSVHGNLRTNAAGANLNREWME PDAERSPEVLVVRDAIHAIGCDLFFDIHGDEDLPYVFAAGSEMLPGFTEQQRVEQSAFIDSFKRASPDFQDEHGYPPGKY REDALKLASKYIGHRFGCLSLTLEMPFKDNANLPDEHVGWNGARSASLGAAMLGAILEHVRAFA
Sequences:
>Translated_384_residues MTLSITSNFDAGAIDVVSCERADAIRLRVRGDNRSEFAQWFYFRLTGARGERCVMTFENANDCAYPAGWRDYRAVASYDR VNWFRVPTSYDGQMLTIDHTPEFDSIHYAYFEPYSEERHSEFLGAVQQMPQASVVELGRTVEGRPMSLVVLGTPDEAGAA KKKVWIIARQHPGESMAEWFIEGLVKRLVGWGDWSGDPVARKLYDHATFYIVPNMNPDGSVHGNLRTNAAGANLNREWME PDAERSPEVLVVRDAIHAIGCDLFFDIHGDEDLPYVFAAGSEMLPGFTEQQRVEQSAFIDSFKRASPDFQDEHGYPPGKY REDALKLASKYIGHRFGCLSLTLEMPFKDNANLPDEHVGWNGARSASLGAAMLGAILEHVRAFA >Mature_383_residues TLSITSNFDAGAIDVVSCERADAIRLRVRGDNRSEFAQWFYFRLTGARGERCVMTFENANDCAYPAGWRDYRAVASYDRV NWFRVPTSYDGQMLTIDHTPEFDSIHYAYFEPYSEERHSEFLGAVQQMPQASVVELGRTVEGRPMSLVVLGTPDEAGAAK KKVWIIARQHPGESMAEWFIEGLVKRLVGWGDWSGDPVARKLYDHATFYIVPNMNPDGSVHGNLRTNAAGANLNREWMEP DAERSPEVLVVRDAIHAIGCDLFFDIHGDEDLPYVFAAGSEMLPGFTEQQRVEQSAFIDSFKRASPDFQDEHGYPPGKYR EDALKLASKYIGHRFGCLSLTLEMPFKDNANLPDEHVGWNGARSASLGAAMLGAILEHVRAFA
Specific function: Unknown
COG id: COG2866
COG function: function code E; Predicted carboxypeptidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI190194403, Length=352, Percent_Identity=26.9886363636364, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI120444924, Length=330, Percent_Identity=26.3636363636364, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI222352158, Length=326, Percent_Identity=26.3803680981595, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI31657119, Length=311, Percent_Identity=27.0096463022508, Blast_Score=90, Evalue=3e-18, Organism=Homo sapiens, GI170763513, Length=330, Percent_Identity=24.2424242424242, Blast_Score=87, Evalue=2e-17, Organism=Caenorhabditis elegans, GI115533904, Length=364, Percent_Identity=25.2747252747253, Blast_Score=103, Evalue=2e-22, Organism=Caenorhabditis elegans, GI193202888, Length=179, Percent_Identity=29.608938547486, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI28571179, Length=288, Percent_Identity=26.3888888888889, Blast_Score=88, Evalue=8e-18, Organism=Drosophila melanogaster, GI24641847, Length=288, Percent_Identity=26.3888888888889, Blast_Score=88, Evalue=1e-17, Organism=Drosophila melanogaster, GI161077807, Length=288, Percent_Identity=26.3888888888889, Blast_Score=88, Evalue=1e-17, Organism=Drosophila melanogaster, GI24641845, Length=288, Percent_Identity=26.3888888888889, Blast_Score=87, Evalue=1e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000834 [H]
Pfam domain/function: PF00246 Peptidase_M14 [H]
EC number: NA
Molecular weight: Translated: 43090; Mature: 42958
Theoretical pI: Translated: 4.98; Mature: 4.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLSITSNFDAGAIDVVSCERADAIRLRVRGDNRSEFAQWFYFRLTGARGERCVMTFENA CEEEEECCCCCCCEEEEECCCCCEEEEEEECCCHHHHHHEEEEEEECCCCCEEEEEECCC NDCAYPAGWRDYRAVASYDRVNWFRVPTSYDGQMLTIDHTPEFDSIHYAYFEPYSEERHS CCCCCCCCCHHHHHHHCCCCCEEEECCCCCCCEEEEEECCCCCCCEEEEEECCCCHHHHH EFLGAVQQMPQASVVELGRTVEGRPMSLVVLGTPDEAGAAKKKVWIIARQHPGESMAEWF HHHHHHHHCCCHHHHHHCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHH IEGLVKRLVGWGDWSGDPVARKLYDHATFYIVPNMNPDGSVHGNLRTNAAGANLNREWME HHHHHHHHHCCCCCCCCHHHHHHHCCEEEEEEECCCCCCCEECCEECCCCCCCCCHHHCC PDAERSPEVLVVRDAIHAIGCDLFFDIHGDEDLPYVFAAGSEMLPGFTEQQRVEQSAFID CCCCCCCCEEEEECHHHHHCCEEEEEECCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHH SFKRASPDFQDEHGYPPGKYREDALKLASKYIGHRFGCLSLTLEMPFKDNANLPDEHVGW HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCHHHCCC NGARSASLGAAMLGAILEHVRAFA CCCCCHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TLSITSNFDAGAIDVVSCERADAIRLRVRGDNRSEFAQWFYFRLTGARGERCVMTFENA EEEEECCCCCCCEEEEECCCCCEEEEEEECCCHHHHHHEEEEEEECCCCCEEEEEECCC NDCAYPAGWRDYRAVASYDRVNWFRVPTSYDGQMLTIDHTPEFDSIHYAYFEPYSEERHS CCCCCCCCCHHHHHHHCCCCCEEEECCCCCCCEEEEEECCCCCCCEEEEEECCCCHHHHH EFLGAVQQMPQASVVELGRTVEGRPMSLVVLGTPDEAGAAKKKVWIIARQHPGESMAEWF HHHHHHHHCCCHHHHHHCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHH IEGLVKRLVGWGDWSGDPVARKLYDHATFYIVPNMNPDGSVHGNLRTNAAGANLNREWME HHHHHHHHHCCCCCCCCHHHHHHHCCEEEEEEECCCCCCCEECCEECCCCCCCCCHHHCC PDAERSPEVLVVRDAIHAIGCDLFFDIHGDEDLPYVFAAGSEMLPGFTEQQRVEQSAFID CCCCCCCCEEEEECHHHHHCCEEEEEECCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHH SFKRASPDFQDEHGYPPGKYREDALKLASKYIGHRFGCLSLTLEMPFKDNANLPDEHVGW HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCHHHCCC NGARSASLGAAMLGAILEHVRAFA CCCCCHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8320209 [H]