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The map label for this gene is yocS [H]

Identifier: 23502546

GI number: 23502546

Start: 1631268

End: 1632224

Strand: Reverse

Name: yocS [H]

Synonym: BR1688

Alternate gene names: 23502546

Gene position: 1632224-1631268 (Counterclockwise)

Preceding gene: 23502547

Following gene: 23502545

Centisome position: 77.44

GC content: 59.14

Gene sequence:

>957_bases
ATGAAAGCTATTGCCGCTTTTTCTGATTTTGTAGGGCGCAGTTTTGCCATATGGGTCATTGTTTTTGCCGCGCTGGGCTT
TGTCATGCCGGCAACATTCAGCATCTTTGCGCCCTGGATCGTGGTTCTGCTAGGCATCATCATGTTCGGCATGGGCCTGA
CGATTTCGGGCAAGGATTTTGCTGAAGTTGCCAAAAGGCCGTTTGATGTCGCCATCGGTGTGCTGGCGCAGTTCATCATC
ATGCCGCTTCTTGCCGTGCTTCTGACCCGAATCATTCCCATGTCGCCGGAGGTCGCGGCGGGTGTGATTCTCGTTGGCTG
CTGCCCCGGCGGCACGGCCTCCAATGTCATGACCTATCTGTCGAAGGGCGATGTGGCGCTCAGCGTTGCCTGCACCAGCG
TTACCACGCTACTCGCACCGCTGGTCACGCCTTTCCTCGTCTGGTTCTTCGCCAGCCAGTATCTGCCGGTCGATGCGATG
AGCATGTTCATCAGCATCGTGAAGGTGATCCTCGTGCCGCTGGCGCTCGGTTTCGTTCTCCAGAAGCTCGTGCCGGGCGT
GGTCAAGGCTGCGGTGCCCATGCTGCCGCTGGTGTCGGTGGTCGGGATCGTGCTGATCGTCGCCGCCGTTGTTGCGGTCA
ACAAGGCCGCTATCGCACAGTCGGGCCTGCTGATCTTCGCGGTTGTCGTCCTGCATAATTGCTGCGGGTTGCTTCTTGGC
TATTTCGCGGCCCGTTTCGCGGGGCTTTCGCTTGCCAAGCGCAAGGCAATCAGCATCGAGGTCGGCATGCAGAACAGCGG
GCTGGGGGCTGCGCTCGCCAATGCGCATTTCTCGCCGCTTGCCGCGGTGCCGAGCGCCGTTTTCAGCGTCTGGCACAATA
TTTCCGGTGCGCTGGTCGCAAGCTATTATGCGCGCATGGAAGATGATGCTTCCGAAACGCAGACGTCCGCGCAATAA

Upstream 100 bases:

>100_bases
CTTGCGGGCAACTTCAAATATTTTCATTTTAAAAGGCCGGATTGGGTTAAAGAGCGGATTAAGCTATTAAACATTGCGCG
CGTTTTGAAAGGGGAGGGAC

Downstream 100 bases:

>100_bases
GGAAATTCTACCCGCCTGGAGCAATCCGGGCGGGTTTCGTTAAAATATTCCACGAATGGCGTATTGAGGAAAAGCGCGCT
TTCGGCTATCCCGGTAAGTG

Product: sodium/bile acid transporter family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MKAIAAFSDFVGRSFAIWVIVFAALGFVMPATFSIFAPWIVVLLGIIMFGMGLTISGKDFAEVAKRPFDVAIGVLAQFII
MPLLAVLLTRIIPMSPEVAAGVILVGCCPGGTASNVMTYLSKGDVALSVACTSVTTLLAPLVTPFLVWFFASQYLPVDAM
SMFISIVKVILVPLALGFVLQKLVPGVVKAAVPMLPLVSVVGIVLIVAAVVAVNKAAIAQSGLLIFAVVVLHNCCGLLLG
YFAARFAGLSLAKRKAISIEVGMQNSGLGAALANAHFSPLAAVPSAVFSVWHNISGALVASYYARMEDDASETQTSAQ

Sequences:

>Translated_318_residues
MKAIAAFSDFVGRSFAIWVIVFAALGFVMPATFSIFAPWIVVLLGIIMFGMGLTISGKDFAEVAKRPFDVAIGVLAQFII
MPLLAVLLTRIIPMSPEVAAGVILVGCCPGGTASNVMTYLSKGDVALSVACTSVTTLLAPLVTPFLVWFFASQYLPVDAM
SMFISIVKVILVPLALGFVLQKLVPGVVKAAVPMLPLVSVVGIVLIVAAVVAVNKAAIAQSGLLIFAVVVLHNCCGLLLG
YFAARFAGLSLAKRKAISIEVGMQNSGLGAALANAHFSPLAAVPSAVFSVWHNISGALVASYYARMEDDASETQTSAQ
>Mature_318_residues
MKAIAAFSDFVGRSFAIWVIVFAALGFVMPATFSIFAPWIVVLLGIIMFGMGLTISGKDFAEVAKRPFDVAIGVLAQFII
MPLLAVLLTRIIPMSPEVAAGVILVGCCPGGTASNVMTYLSKGDVALSVACTSVTTLLAPLVTPFLVWFFASQYLPVDAM
SMFISIVKVILVPLALGFVLQKLVPGVVKAAVPMLPLVSVVGIVLIVAAVVAVNKAAIAQSGLLIFAVVVLHNCCGLLLG
YFAARFAGLSLAKRKAISIEVGMQNSGLGAALANAHFSPLAAVPSAVFSVWHNISGALVASYYARMEDDASETQTSAQ

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

Organism=Homo sapiens, GI4506973, Length=250, Percent_Identity=32.4, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI37537552, Length=289, Percent_Identity=25.9515570934256, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI4506971, Length=265, Percent_Identity=29.0566037735849, Blast_Score=89, Evalue=6e-18,
Organism=Homo sapiens, GI58219066, Length=240, Percent_Identity=29.5833333333333, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI24308414, Length=248, Percent_Identity=28.6290322580645, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI215422370, Length=225, Percent_Identity=27.1111111111111, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI9790143, Length=225, Percent_Identity=27.1111111111111, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI215422368, Length=225, Percent_Identity=27.1111111111111, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 33167; Mature: 33167

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAIAAFSDFVGRSFAIWVIVFAALGFVMPATFSIFAPWIVVLLGIIMFGMGLTISGKDF
CCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
AEVAKRPFDVAIGVLAQFIIMPLLAVLLTRIIPMSPEVAAGVILVGCCPGGTASNVMTYL
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCEEEEEECCCCCHHHHHHHH
SKGDVALSVACTSVTTLLAPLVTPFLVWFFASQYLPVDAMSMFISIVKVILVPLALGFVL
HCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QKLVPGVVKAAVPMLPLVSVVGIVLIVAAVVAVNKAAIAQSGLLIFAVVVLHNCCGLLLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
YFAARFAGLSLAKRKAISIEVGMQNSGLGAALANAHFSPLAAVPSAVFSVWHNISGALVA
HHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHH
SYYARMEDDASETQTSAQ
HHHHHHCCCHHHHHCCCC
>Mature Secondary Structure
MKAIAAFSDFVGRSFAIWVIVFAALGFVMPATFSIFAPWIVVLLGIIMFGMGLTISGKDF
CCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
AEVAKRPFDVAIGVLAQFIIMPLLAVLLTRIIPMSPEVAAGVILVGCCPGGTASNVMTYL
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCEEEEEECCCCCHHHHHHHH
SKGDVALSVACTSVTTLLAPLVTPFLVWFFASQYLPVDAMSMFISIVKVILVPLALGFVL
HCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QKLVPGVVKAAVPMLPLVSVVGIVLIVAAVVAVNKAAIAQSGLLIFAVVVLHNCCGLLLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
YFAARFAGLSLAKRKAISIEVGMQNSGLGAALANAHFSPLAAVPSAVFSVWHNISGALVA
HHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHH
SYYARMEDDASETQTSAQ
HHHHHHCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]