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The map label for this gene is phyR [H]

Identifier: 23502516

GI number: 23502516

Start: 1605633

End: 1606427

Strand: Reverse

Name: phyR [H]

Synonym: BR1657

Alternate gene names: 23502516

Gene position: 1606427-1605633 (Counterclockwise)

Preceding gene: 23502519

Following gene: 23502515

Centisome position: 76.21

GC content: 56.23

Gene sequence:

>795_bases
ATGACGTTATCGACGCGTATAGCGCCGCATCTTCCCTATTTGCGCCGTTTTTCCCGCGCGCTTACCGGATCCCAGTCCTC
TGGCGATGCCTATGTAGCCGCAGCGCTGGAAGCCCTGATTGCCGATGTCGGCATCTTCCCCGAAGCTTCTTCCGATCGGA
TCGGTCTCTACAGGCTTTTTTGCAATCTCTATAAAAATGCCTCCATCCGCATGCCCGAAACCTCTTCGGAATTCGCCTGG
GAAACCCATGCAGCGCGCAATCTGGCCCATATTGCCCCTTTGCCGCGCCAGGCTTTCCTGCTGGTCGCCGTGGAAGGCTT
CAACGATCATGAGGCAGCAGAAATCCTTGAAGTGGACCAAGCGGAATTCGGACGGCTTCTCTCCACCGCCTCCGGCGAAA
TTTCACGCCAGGTGGCAACACGTCTGATGATCATTGAGGATGAACCCCTCATTGCCATGGATATCGAACAGATGGTCGAA
AGCCTCGGCCATGAAGTGGTTGGTATTGCGCGCACCAAGGATGAGGCGCTGGCGCTTTATGAAAAAGAAAAGCCGCGCAT
GGTTCTCGCCGATATCCAGCTTGCCGACGGTAGCTCCGGCATCGATGCGGTCAATGAGATACTTCACGACAACACCATCC
CGGTGATTTTCATCACCGCATTTCCGGAGCGCCTGCTGACGGGCGAGCGGCCCGAGCCGACATTTCTCGTCACCAAGCCG
TTCAACCCCGACATGGTGAAGGCCCTCATCAGCCAGGCACTTTTCTTTGAGGAAGCATCGCAAGTTGCTGCCTGA

Upstream 100 bases:

>100_bases
TTTATCATAGTGCCGCGCCCTAAGCATGATCTTTGCGTATTTTTTTACGTAGGGTTATCGTAAACACAAAGACTTGCGGT
AATTGAGGAGTCCCTGAATC

Downstream 100 bases:

>100_bases
CGCTGGCAGGCAGCACAACACAGGCAGCCTTCTTTTTAAATTTTAAAGCATATGCTTTGTAATAATCAGGGCTTTCAATT
TGCACAAAAAAAGGAACAAA

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 263

Protein sequence:

>264_residues
MTLSTRIAPHLPYLRRFSRALTGSQSSGDAYVAAALEALIADVGIFPEASSDRIGLYRLFCNLYKNASIRMPETSSEFAW
ETHAARNLAHIAPLPRQAFLLVAVEGFNDHEAAEILEVDQAEFGRLLSTASGEISRQVATRLMIIEDEPLIAMDIEQMVE
SLGHEVVGIARTKDEALALYEKEKPRMVLADIQLADGSSGIDAVNEILHDNTIPVIFITAFPERLLTGERPEPTFLVTKP
FNPDMVKALISQALFFEEASQVAA

Sequences:

>Translated_264_residues
MTLSTRIAPHLPYLRRFSRALTGSQSSGDAYVAAALEALIADVGIFPEASSDRIGLYRLFCNLYKNASIRMPETSSEFAW
ETHAARNLAHIAPLPRQAFLLVAVEGFNDHEAAEILEVDQAEFGRLLSTASGEISRQVATRLMIIEDEPLIAMDIEQMVE
SLGHEVVGIARTKDEALALYEKEKPRMVLADIQLADGSSGIDAVNEILHDNTIPVIFITAFPERLLTGERPEPTFLVTKP
FNPDMVKALISQALFFEEASQVAA
>Mature_263_residues
TLSTRIAPHLPYLRRFSRALTGSQSSGDAYVAAALEALIADVGIFPEASSDRIGLYRLFCNLYKNASIRMPETSSEFAWE
THAARNLAHIAPLPRQAFLLVAVEGFNDHEAAEILEVDQAEFGRLLSTASGEISRQVATRLMIIEDEPLIAMDIEQMVES
LGHEVVGIARTKDEALALYEKEKPRMVLADIQLADGSSGIDAVNEILHDNTIPVIFITAFPERLLTGERPEPTFLVTKPF
NPDMVKALISQALFFEEASQVAA

Specific function: Key regulator for adaptation to epiphytic life (leaf colonizing) of the bacterium. Positively regulates several genes including katE, sodA, hsp20, dps and gloA. However it is not known whether this regulation is direct or indirect. Also induces several de

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR014605
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 29039; Mature: 28908

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLSTRIAPHLPYLRRFSRALTGSQSSGDAYVAAALEALIADVGIFPEASSDRIGLYRLF
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
CNLYKNASIRMPETSSEFAWETHAARNLAHIAPLPRQAFLLVAVEGFNDHEAAEILEVDQ
HHHHCCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHCH
AEFGRLLSTASGEISRQVATRLMIIEDEPLIAMDIEQMVESLGHEVVGIARTKDEALALY
HHHHHHHHHCCHHHHHHHHHEEEEECCCCEEEHHHHHHHHHCCCCEEEEECCCCHHHHHH
EKEKPRMVLADIQLADGSSGIDAVNEILHDNTIPVIFITAFPERLLTGERPEPTFLVTKP
HCCCCCEEEEEEEECCCCCCHHHHHHHHCCCCCCEEEEEECCHHHHCCCCCCCCEEEECC
FNPDMVKALISQALFFEEASQVAA
CCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TLSTRIAPHLPYLRRFSRALTGSQSSGDAYVAAALEALIADVGIFPEASSDRIGLYRLF
CCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
CNLYKNASIRMPETSSEFAWETHAARNLAHIAPLPRQAFLLVAVEGFNDHEAAEILEVDQ
HHHHCCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHCH
AEFGRLLSTASGEISRQVATRLMIIEDEPLIAMDIEQMVESLGHEVVGIARTKDEALALY
HHHHHHHHHCCHHHHHHHHHEEEEECCCCEEEHHHHHHHHHCCCCEEEEECCCCHHHHHH
EKEKPRMVLADIQLADGSSGIDAVNEILHDNTIPVIFITAFPERLLTGERPEPTFLVTKP
HCCCCCEEEEEEEECCCCCCHHHHHHHHCCCCCCEEEEEECCHHHHCCCCCCCCEEEECC
FNPDMVKALISQALFFEEASQVAA
CCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA