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The map label for this gene is yddA [H]

Identifier: 23502359

GI number: 23502359

Start: 1447814

End: 1449679

Strand: Reverse

Name: yddA [H]

Synonym: BR1490

Alternate gene names: 23502359

Gene position: 1449679-1447814 (Counterclockwise)

Preceding gene: 23502362

Following gene: 23502355

Centisome position: 68.78

GC content: 58.52

Gene sequence:

>1866_bases
ATGACGTCTGAACCAAAACCGGACAAGACGAAACAGGGTACGCAGAAGAGCCGTCGCCGAAAGGCAAAGCGCGGCCTTGG
TGAACGGCTGCGCAAAAGCTCGTCCAGGCTGCTCGGCGGTGGTGCTGTTCCCGACGGTACAGACCTTTTCTCGCAGGTTT
CCATGATGGTGCGTGCCTTCATGGCTTCGCCTGTGCGCAATACGCTGATCGCCATCGGAACGGGTATCTTCGTGCTCGTC
GTGCTGATTGCGGTCGGGCAGGTTGCCATCAATCGCTGGAACGAGCCTTTCTACGATGCGCTGGCGCGCCGGGATCTGAC
GGCTTTCTTCCACCAGTTGATGGTGTTTTTCGGCATTGCCGGCTCGCTTCTGGTGCTGAATGTCTCGCAGACATGGCTGA
ACCTGATGTTCAAGCTGAAACTGCGCGAGGGGCTGGCGCGCGATCTCATCGGCCAGTGGCTGGAGCCGGGACGCGCGTTC
CGTCTGGCCAATGCGGGAGAAATCGGTATCAATCCCGACCAGAGGCTACAGGAGGATGCGCGGCATCTGGCCGAAACATC
CTGCGATCTCGGCATCAACCTTCTGCAATCGACGGTCATTCTGATCAGTTTCATCGGCGTTTTATGGTCGTTGTCGAGCG
GCTTCGTATTCCATATTGCGGGTTACAGCTTTTCGATTCCCGGCTATATGGTCTGGGCGGTCATCATTTATGCGGCTTCG
GCTTCGTGGCTGACATGGATCGTGGGACGAAGCCTTGTGAACATTAACGCCAATCGCTATGCGCGCGAGGCGGATTTTCG
CGCCGCGCTGATGCGCGTCAACGAGCATCTCGATGCGATCACGCTTTCACGCGGGGAGGGCGATGAGCGGCGTCGGCTCA
ATCTTGATATCGATGCCGTGCTGGGTGCAATCCGCAGAATCGTTTCCGCCACGACACGGCTTACATGGGTGACGGCCGGC
TATGGCTGGCTGACCATTGTGGCCCCGATCCTCGTGGCGGCGCCTGTCTATTTTTCCGGTGATCTGACTTTCGGCGGCCT
GATGATGGCGGTCGGCGCTTTCACGCAGGTTCATAATTCCCTGCGCTGGTTTGTCGATAATTTCGGGGCCATTGCTGACT
GGCGTGCGACGTTGCTTCGCGTGGCAAGCTTCCGTCAGGCGGTGATGCGGATGGATGAGCTTGGCTATCTTGACCGGCAG
ATCATGCTCGCCGCGAACAAGGACGATGTGCTGACCCTCGATGATGTTTCCATTGCAGCACCTGACCAATGTTTGCGGCT
TTCGCAGAAAGATTTCATCGTCAGGCCGGGCGGGCGCGTGCTGGTGACGGGCGGAACCGAAACGCAGCGGACATTGCTTT
TTCGCGCGCTAGGTGGGCTCTGGCCATGGGGCGAGGGGCGGATCGGTATGCCGGTTGGCGAAGCTGTCGCCTTCATGCCG
CGCGCGCCCTATTTCCCGCCCGGAAACCTCAAGGGCGTGATCGTCTATCCGCTCGATATTGCGAAATTCTCTACCGAAGA
GTTGGAAAATGTTCTGCGCCGGGCGGGGCTGGAACGGCTTGCAGGCAGTCTGGAGCGTATCGCCCGCTGGGACAGGGTAC
TGACCGAAGACGAGCGGCAATGCCTGGCTTTTGCGCGCCTCATCCTGCAACAGCCGAAATGGATCGTCATTGACGGTGCG
CTCGATGGTCTGGACACGGAAGCCTATGACAGAATTCGCGATATGCTGGATGGCGAGCTGAAGGATGCCGCTGTGATCCA
TCTGGGCAAGCCGCATCTGCATGATGGCCTTTTCAAGCAGCAGATCAATCTGGAGGATGATCCTTCCGGAAAACCGCTGG
AACTGCCTGCTCTTAAAACCGCATGA

Upstream 100 bases:

>100_bases
GTGAACGGGAACAAATGCGCTACATGGAAACCGCGACGATCTCCTATCTTTGGCTTCGATGGGAAGCGCATAATGGTGCG
AACAGGCTGCGAGGCAGGAC

Downstream 100 bases:

>100_bases
AAAAAGCCGCCGGGGCGACCGGCGGCAAGAAGAAATCACTCGCTTGTTTCAGCAAGTCTATTTGGAAGCTGATGGAGACG
GGAAAAATCCTTCGTCGTAT

Product: transporter

Products: NA

Alternate protein names: CDS102 [H]

Number of amino acids: Translated: 621; Mature: 620

Protein sequence:

>621_residues
MTSEPKPDKTKQGTQKSRRRKAKRGLGERLRKSSSRLLGGGAVPDGTDLFSQVSMMVRAFMASPVRNTLIAIGTGIFVLV
VLIAVGQVAINRWNEPFYDALARRDLTAFFHQLMVFFGIAGSLLVLNVSQTWLNLMFKLKLREGLARDLIGQWLEPGRAF
RLANAGEIGINPDQRLQEDARHLAETSCDLGINLLQSTVILISFIGVLWSLSSGFVFHIAGYSFSIPGYMVWAVIIYAAS
ASWLTWIVGRSLVNINANRYAREADFRAALMRVNEHLDAITLSRGEGDERRRLNLDIDAVLGAIRRIVSATTRLTWVTAG
YGWLTIVAPILVAAPVYFSGDLTFGGLMMAVGAFTQVHNSLRWFVDNFGAIADWRATLLRVASFRQAVMRMDELGYLDRQ
IMLAANKDDVLTLDDVSIAAPDQCLRLSQKDFIVRPGGRVLVTGGTETQRTLLFRALGGLWPWGEGRIGMPVGEAVAFMP
RAPYFPPGNLKGVIVYPLDIAKFSTEELENVLRRAGLERLAGSLERIARWDRVLTEDERQCLAFARLILQQPKWIVIDGA
LDGLDTEAYDRIRDMLDGELKDAAVIHLGKPHLHDGLFKQQINLEDDPSGKPLELPALKTA

Sequences:

>Translated_621_residues
MTSEPKPDKTKQGTQKSRRRKAKRGLGERLRKSSSRLLGGGAVPDGTDLFSQVSMMVRAFMASPVRNTLIAIGTGIFVLV
VLIAVGQVAINRWNEPFYDALARRDLTAFFHQLMVFFGIAGSLLVLNVSQTWLNLMFKLKLREGLARDLIGQWLEPGRAF
RLANAGEIGINPDQRLQEDARHLAETSCDLGINLLQSTVILISFIGVLWSLSSGFVFHIAGYSFSIPGYMVWAVIIYAAS
ASWLTWIVGRSLVNINANRYAREADFRAALMRVNEHLDAITLSRGEGDERRRLNLDIDAVLGAIRRIVSATTRLTWVTAG
YGWLTIVAPILVAAPVYFSGDLTFGGLMMAVGAFTQVHNSLRWFVDNFGAIADWRATLLRVASFRQAVMRMDELGYLDRQ
IMLAANKDDVLTLDDVSIAAPDQCLRLSQKDFIVRPGGRVLVTGGTETQRTLLFRALGGLWPWGEGRIGMPVGEAVAFMP
RAPYFPPGNLKGVIVYPLDIAKFSTEELENVLRRAGLERLAGSLERIARWDRVLTEDERQCLAFARLILQQPKWIVIDGA
LDGLDTEAYDRIRDMLDGELKDAAVIHLGKPHLHDGLFKQQINLEDDPSGKPLELPALKTA
>Mature_620_residues
TSEPKPDKTKQGTQKSRRRKAKRGLGERLRKSSSRLLGGGAVPDGTDLFSQVSMMVRAFMASPVRNTLIAIGTGIFVLVV
LIAVGQVAINRWNEPFYDALARRDLTAFFHQLMVFFGIAGSLLVLNVSQTWLNLMFKLKLREGLARDLIGQWLEPGRAFR
LANAGEIGINPDQRLQEDARHLAETSCDLGINLLQSTVILISFIGVLWSLSSGFVFHIAGYSFSIPGYMVWAVIIYAASA
SWLTWIVGRSLVNINANRYAREADFRAALMRVNEHLDAITLSRGEGDERRRLNLDIDAVLGAIRRIVSATTRLTWVTAGY
GWLTIVAPILVAAPVYFSGDLTFGGLMMAVGAFTQVHNSLRWFVDNFGAIADWRATLLRVASFRQAVMRMDELGYLDRQI
MLAANKDDVLTLDDVSIAAPDQCLRLSQKDFIVRPGGRVLVTGGTETQRTLLFRALGGLWPWGEGRIGMPVGEAVAFMPR
APYFPPGNLKGVIVYPLDIAKFSTEELENVLRRAGLERLAGSLERIARWDRVLTEDERQCLAFARLILQQPKWIVIDGAL
DGLDTEAYDRIRDMLDGELKDAAVIHLGKPHLHDGLFKQQINLEDDPSGKPLELPALKTA

Specific function: Unknown

COG id: COG4178

COG function: function code R; ABC-type uncharacterized transport system, permease and ATPase components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI4826958, Length=514, Percent_Identity=25.0972762645914, Blast_Score=114, Evalue=3e-25,
Organism=Homo sapiens, GI4506341, Length=556, Percent_Identity=22.1223021582734, Blast_Score=93, Evalue=7e-19,
Organism=Homo sapiens, GI9945308, Length=527, Percent_Identity=20.303605313093, Blast_Score=92, Evalue=2e-18,
Organism=Homo sapiens, GI7262393, Length=202, Percent_Identity=25.2475247524752, Blast_Score=76, Evalue=1e-13,
Organism=Escherichia coli, GI1787772, Length=502, Percent_Identity=28.0876494023904, Blast_Score=223, Evalue=2e-59,
Organism=Escherichia coli, GI1786575, Length=343, Percent_Identity=23.3236151603499, Blast_Score=64, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17532409, Length=457, Percent_Identity=22.1006564551422, Blast_Score=99, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI17532411, Length=468, Percent_Identity=22.6495726495727, Blast_Score=97, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17542146, Length=536, Percent_Identity=21.6417910447761, Blast_Score=86, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24643394, Length=536, Percent_Identity=21.8283582089552, Blast_Score=90, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24638550, Length=536, Percent_Identity=21.8283582089552, Blast_Score=90, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24638552, Length=536, Percent_Identity=21.8283582089552, Blast_Score=90, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24638554, Length=536, Percent_Identity=21.8283582089552, Blast_Score=90, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24638546, Length=536, Percent_Identity=21.8283582089552, Blast_Score=90, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24638556, Length=536, Percent_Identity=21.8283582089552, Blast_Score=90, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24638548, Length=536, Percent_Identity=21.8283582089552, Blast_Score=90, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24638558, Length=183, Percent_Identity=26.775956284153, Blast_Score=82, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010509
- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR017940
- InterPro:   IPR011527
- InterPro:   IPR003593 [H]

Pfam domain/function: PF06472 ABC_membrane_2; PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 68943; Mature: 68812

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: PS50893 ABC_TRANSPORTER_2 ; PS50929 ABC_TM1F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSEPKPDKTKQGTQKSRRRKAKRGLGERLRKSSSRLLGGGAVPDGTDLFSQVSMMVRAF
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHH
MASPVRNTLIAIGTGIFVLVVLIAVGQVAINRWNEPFYDALARRDLTAFFHQLMVFFGIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
GSLLVLNVSQTWLNLMFKLKLREGLARDLIGQWLEPGRAFRLANAGEIGINPDQRLQEDA
CCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHH
RHLAETSCDLGINLLQSTVILISFIGVLWSLSSGFVFHIAGYSFSIPGYMVWAVIIYAAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECCHHHHHHHHHHHHCC
ASWLTWIVGRSLVNINANRYAREADFRAALMRVNEHLDAITLSRGEGDERRRLNLDIDAV
HHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCHHEECCCHHHH
LGAIRRIVSATTRLTWVTAGYGWLTIVAPILVAAPVYFSGDLTFGGLMMAVGAFTQVHNS
HHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHH
LRWFVDNFGAIADWRATLLRVASFRQAVMRMDELGYLDRQIMLAANKDDVLTLDDVSIAA
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEECCCCCCC
PDQCLRLSQKDFIVRPGGRVLVTGGTETQRTLLFRALGGLWPWGEGRIGMPVGEAVAFMP
CHHHHHCCCCCEEECCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCC
RAPYFPPGNLKGVIVYPLDIAKFSTEELENVLRRAGLERLAGSLERIARWDRVLTEDERQ
CCCCCCCCCCCEEEEEECCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CLAFARLILQQPKWIVIDGALDGLDTEAYDRIRDMLDGELKDAAVIHLGKPHLHDGLFKQ
HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHH
QINLEDDPSGKPLELPALKTA
CCCCCCCCCCCCEECCCCCCC
>Mature Secondary Structure 
TSEPKPDKTKQGTQKSRRRKAKRGLGERLRKSSSRLLGGGAVPDGTDLFSQVSMMVRAF
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHH
MASPVRNTLIAIGTGIFVLVVLIAVGQVAINRWNEPFYDALARRDLTAFFHQLMVFFGIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
GSLLVLNVSQTWLNLMFKLKLREGLARDLIGQWLEPGRAFRLANAGEIGINPDQRLQEDA
CCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHH
RHLAETSCDLGINLLQSTVILISFIGVLWSLSSGFVFHIAGYSFSIPGYMVWAVIIYAAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECCHHHHHHHHHHHHCC
ASWLTWIVGRSLVNINANRYAREADFRAALMRVNEHLDAITLSRGEGDERRRLNLDIDAV
HHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCHHEECCCHHHH
LGAIRRIVSATTRLTWVTAGYGWLTIVAPILVAAPVYFSGDLTFGGLMMAVGAFTQVHNS
HHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHH
LRWFVDNFGAIADWRATLLRVASFRQAVMRMDELGYLDRQIMLAANKDDVLTLDDVSIAA
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEECCCCCCC
PDQCLRLSQKDFIVRPGGRVLVTGGTETQRTLLFRALGGLWPWGEGRIGMPVGEAVAFMP
CHHHHHCCCCCEEECCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCC
RAPYFPPGNLKGVIVYPLDIAKFSTEELENVLRRAGLERLAGSLERIARWDRVLTEDERQ
CCCCCCCCCCCEEEEEECCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CLAFARLILQQPKWIVIDGALDGLDTEAYDRIRDMLDGELKDAAVIHLGKPHLHDGLFKQ
HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHH
QINLEDDPSGKPLELPALKTA
CCCCCCCCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]