Click here to switch to the map view.

The map label for this gene is rbsC [H]

Identifier: 23502212

GI number: 23502212

Start: 1300595

End: 1301722

Strand: Reverse

Name: rbsC [H]

Synonym: BR1340

Alternate gene names: 23502212

Gene position: 1301722-1300595 (Counterclockwise)

Preceding gene: 23502213

Following gene: 23502211

Centisome position: 61.76

GC content: 59.84

Gene sequence:

>1128_bases
ATGAGCGAACCCAATTCCGAAACGAAGGCCGCAGCGGCGGCACCCGCCGATGAGCGGCTGAAATCGGCCAGCACCTTGCA
GCGCCTGTTGAGCAGGCCGGAACTGGGCGCGGTGTCCGGTCTGGTTCTCATCACGATCTTCTTTGTTTCAACCGCCAATT
CGGCCATGTTTACCGCAGCCGGGATCATGAATTTCATGGCCCCGGCCTCGCAGCTCGGTATTCTTGCTGTCGCAGCGGCG
CTGTTGATGATCGGCGGCGAGTTCGATCTTTCCATTGGGTCTATGGTGGCCTTTGCCGGCCTGATTTTTGCCGCAGCCCT
TGTCGTCTGGCAGGTGCCGCTTGCCGTTGCCATTATCGTTACCTTGCTGTTTGCGGCGCTGGTGGGGGCGGTGAATGCGC
AGATCGTCATCAGAACGGGTCTGCCGTCCTTTATCGTCACGCTGGCCTTTCTCTTCATATTGCGCGGCCTTTCGCTTGTC
GGGCTGAAGTGGGCAACCGGCGGTGCGACGCAGCTGCGCGGTGTGAAGGAAGCGGTCAGCGGCAGCTATCTGGCCGGCCT
CTTTTCCGGCGATGCATTTCCGGGGCTTTTCGCATGGCTGGCGGAAAAGGATTTGATTGCGAAATTTCCAAATGGCGAGC
CGGCAGTGAAAGGTGTGCTGGTCGAGGTGCTGTGGTTTGTCGTGATTGCCCTTGTCGCGACCTATATTCTGGTGCGCACC
CGCTTCGGCAACTGGATTTTTGCGGCGGGCGGCGATGCGCTTGCCGCGCGCAATTCCGGTGTTCCGGTGCGCCGCGTCAA
AACCACGCTCTTCATGTGCACGGCCATGGCGGCAGCACTTGTGGCTATCCTGACTGTTCTCGATGCCGGGTCCACCGATG
CACGGCGCGGTTTCCAGAAAGAATTCGAGGCAATCATCGCGGCCGTGATCGGCGGGTGCCTGCTGACCGGCGGTTATGGC
TCGGCCATCGGCGCTTTCTTCGGCGCGATCATTTTCGGCATGGTGCTGATCGGGCTGACCTATACGCAGATCGACCAGGA
CTGGTATCTTGTGTTTCTCGGGGGAATGCTTCTGATCGCTGTGCTCTTCAATAATTTCATCCGCAAGCGCGCCACGGGCG
AGCGTTGA

Upstream 100 bases:

>100_bases
TCGAACCCGCCCACGCAAATGGGCGGGAACGGATGATTGCACCCAAGCTTCAGCAGCTTCGACCGTGATCGTGGCTGCAA
GAATGCCTGAGGAAAAGATG

Downstream 100 bases:

>100_bases
GAGGGAGGTTTTCATGACGACGCCGATCATCGAAGTCCGCAATCTCGTCAAGCATTTCGGCCCTGTGATTGCGCTAAACG
GCGTTTCGCTCAGTGTGGAG

Product: sugar ABC transporter permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 374

Protein sequence:

>375_residues
MSEPNSETKAAAAAPADERLKSASTLQRLLSRPELGAVSGLVLITIFFVSTANSAMFTAAGIMNFMAPASQLGILAVAAA
LLMIGGEFDLSIGSMVAFAGLIFAAALVVWQVPLAVAIIVTLLFAALVGAVNAQIVIRTGLPSFIVTLAFLFILRGLSLV
GLKWATGGATQLRGVKEAVSGSYLAGLFSGDAFPGLFAWLAEKDLIAKFPNGEPAVKGVLVEVLWFVVIALVATYILVRT
RFGNWIFAAGGDALAARNSGVPVRRVKTTLFMCTAMAAALVAILTVLDAGSTDARRGFQKEFEAIIAAVIGGCLLTGGYG
SAIGAFFGAIIFGMVLIGLTYTQIDQDWYLVFLGGMLLIAVLFNNFIRKRATGER

Sequences:

>Translated_375_residues
MSEPNSETKAAAAAPADERLKSASTLQRLLSRPELGAVSGLVLITIFFVSTANSAMFTAAGIMNFMAPASQLGILAVAAA
LLMIGGEFDLSIGSMVAFAGLIFAAALVVWQVPLAVAIIVTLLFAALVGAVNAQIVIRTGLPSFIVTLAFLFILRGLSLV
GLKWATGGATQLRGVKEAVSGSYLAGLFSGDAFPGLFAWLAEKDLIAKFPNGEPAVKGVLVEVLWFVVIALVATYILVRT
RFGNWIFAAGGDALAARNSGVPVRRVKTTLFMCTAMAAALVAILTVLDAGSTDARRGFQKEFEAIIAAVIGGCLLTGGYG
SAIGAFFGAIIFGMVLIGLTYTQIDQDWYLVFLGGMLLIAVLFNNFIRKRATGER
>Mature_374_residues
SEPNSETKAAAAAPADERLKSASTLQRLLSRPELGAVSGLVLITIFFVSTANSAMFTAAGIMNFMAPASQLGILAVAAAL
LMIGGEFDLSIGSMVAFAGLIFAAALVVWQVPLAVAIIVTLLFAALVGAVNAQIVIRTGLPSFIVTLAFLFILRGLSLVG
LKWATGGATQLRGVKEAVSGSYLAGLFSGDAFPGLFAWLAEKDLIAKFPNGEPAVKGVLVEVLWFVVIALVATYILVRTR
FGNWIFAAGGDALAARNSGVPVRRVKTTLFMCTAMAAALVAILTVLDAGSTDARRGFQKEFEAIIAAVIGGCLLTGGYGS
AIGAFFGAIIFGMVLIGLTYTQIDQDWYLVFLGGMLLIAVLFNNFIRKRATGER

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=324, Percent_Identity=30.8641975308642, Blast_Score=105, Evalue=6e-24,
Organism=Escherichia coli, GI1789992, Length=368, Percent_Identity=30.9782608695652, Blast_Score=105, Evalue=7e-24,
Organism=Escherichia coli, GI1788896, Length=374, Percent_Identity=30.7486631016043, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI87082395, Length=299, Percent_Identity=27.0903010033445, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1790524, Length=332, Percent_Identity=27.710843373494, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787794, Length=295, Percent_Identity=29.8305084745763, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI145693152, Length=302, Percent_Identity=27.1523178807947, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 39255; Mature: 39124

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEPNSETKAAAAAPADERLKSASTLQRLLSRPELGAVSGLVLITIFFVSTANSAMFTAA
CCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHH
GIMNFMAPASQLGILAVAAALLMIGGEFDLSIGSMVAFAGLIFAAALVVWQVPLAVAIIV
HHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLLFAALVGAVNAQIVIRTGLPSFIVTLAFLFILRGLSLVGLKWATGGATQLRGVKEAVS
HHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHCHHHHCEEECCCCHHHHHHHHHHHC
GSYLAGLFSGDAFPGLFAWLAEKDLIAKFPNGEPAVKGVLVEVLWFVVIALVATYILVRT
CHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFGNWIFAAGGDALAARNSGVPVRRVKTTLFMCTAMAAALVAILTVLDAGSTDARRGFQK
HCCCEEEECCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
EFEAIIAAVIGGCLLTGGYGSAIGAFFGAIIFGMVLIGLTYTQIDQDWYLVFLGGMLLIA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
VLFNNFIRKRATGER
HHHHHHHHHHCCCCC
>Mature Secondary Structure 
SEPNSETKAAAAAPADERLKSASTLQRLLSRPELGAVSGLVLITIFFVSTANSAMFTAA
CCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHH
GIMNFMAPASQLGILAVAAALLMIGGEFDLSIGSMVAFAGLIFAAALVVWQVPLAVAIIV
HHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLLFAALVGAVNAQIVIRTGLPSFIVTLAFLFILRGLSLVGLKWATGGATQLRGVKEAVS
HHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHCHHHHCEEECCCCHHHHHHHHHHHC
GSYLAGLFSGDAFPGLFAWLAEKDLIAKFPNGEPAVKGVLVEVLWFVVIALVATYILVRT
CHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFGNWIFAAGGDALAARNSGVPVRRVKTTLFMCTAMAAALVAILTVLDAGSTDARRGFQK
HCCCEEEECCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
EFEAIIAAVIGGCLLTGGYGSAIGAFFGAIIFGMVLIGLTYTQIDQDWYLVFLGGMLLIA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
VLFNNFIRKRATGER
HHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]