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The map label for this gene is secY [H]

Identifier: 23502090

GI number: 23502090

Start: 1189696

End: 1191036

Strand: Reverse

Name: secY [H]

Synonym: BR1213

Alternate gene names: 23502090

Gene position: 1191036-1189696 (Counterclockwise)

Preceding gene: 23502091

Following gene: 23502089

Centisome position: 56.51

GC content: 55.18

Gene sequence:

>1341_bases
ATGGCATCGGCTGCTGAACAGCTAGTTTCCAATCTCAATTTTTCGGCTTTCTCGAAGGCAGAAGAACTCAAGAAGCGCAT
CTGGTTCACGCTGGGTGCTTTGCTCGTATACCGGTTCGGCACCTATATTCCGCTTCCCGGCATCAATCCTGACGCGCTTG
CGCAGGCTTTCCAGCAGCATAGCCAGGGTGTGCTCGGACTTTTCAATATGTTTGCCGGTGGCGCCGTCGGTCGTATGGCC
ATCTTCGCGCTCGGCATCATGCCCTATATTTCCGCCTCCATTATCGTGCAGCTCATGACGTCGGTTGTGCCGTCGCTTGA
AGCGCTGAAGAAGGAAGGCGAGGCGGGCCGCAAGATCATCAATCAGTATACGCGTTATGGCACGGTGCTTCTGGCGCTTG
TGCAGGCTTATGCGATTTCGGTTGGCTTGCAGTCCGGCAACGGCATTGTCACCAATCCCGGGCCTTTCTTCATCGTTTCG
TCGGTGATTACGCTTGTCGGCGGCACGATGTTCCTGATGTGGCTCGGTGAACAGATCACGGCGCGCGGTATCGGCAACGG
TATTTCGCTGATTATCTTCTCCGGTATTGTCGCCAACTTGCCGCACGCCATTTCCGGCACGCTGGAACTGGGGCGTACCG
GTGCACTCTCAACCGGCCTTATTCTGGGTGTTATCGTTCTTGCGGTTGCCCTGGTTGCGGTTATCGTGTTCGTTGAACGC
GCGCAGCGCCGCCTTCTGATCCAGTATCCGAAGCGTCAGGTCGGCAATCGTATGTTCCAGGGCGATACGTCGCACCTGCC
GCTCAAGCTCAACACCGCCGGTGTCATTCCGCCGATCTTTGCTTCGTCGCTGCTGCTTTTGCCGGCGACGGTAGCAGGCT
TTGCCAATACGACGGAAATGCCAGCCTGGGCGACCACCGTTCTCAATGCGCTCGGCCATGGACAGCCGCTTTATATGCTG
TTCTACGCTGCATTGATGGCATTTTTCTGCTTCTTCTATACGGCCATTGTGTTCAATCCCAAGGACACCGCTGACCAGCT
CAAGAAGCATTCCGGCTTTATTCCGGGCATTCGTCCGGGTGAGCGTACGGCGGAATATATAGACTATGTGTTGACGCGTA
TCACAGTTGTCGGCGCCATCTATATTGTGCTTGTCTGTCTCCTGCCGGAATTCCTGATTTCCGCGACCGGTGTGCCATTC
TATCTTGGTGGTACCTCGCTGCTGATCGTTGTGAGCGTGACGCTCGATACGGTTGCGCAAATTCAGGGGCATCTGATCGC
CCATCAGTATGAAGGGCTGATCAAGAAGTCCAAACTCAGAGGTGGGAAACGTAATAGATGA

Upstream 100 bases:

>100_bases
TGCGCATATCTGGGTAGGGTCTTTTTAGTCTCAAGGTGCAACCGCTGAGGATTGCGCTTTCGGGAGTGGAGGACCGGAGA
CTTTTCACCGGAGAAATTTA

Downstream 100 bases:

>100_bases
GACTGATACTTCTTGGGCCGCCCGGAGCAGGTAAGGGGACGCAGGCTGGACTTCTTACCAAGAAGCATGGAATACCTCAG
CTCTCGACCGGCGATATGCT

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 445

Protein sequence:

>446_residues
MASAAEQLVSNLNFSAFSKAEELKKRIWFTLGALLVYRFGTYIPLPGINPDALAQAFQQHSQGVLGLFNMFAGGAVGRMA
IFALGIMPYISASIIVQLMTSVVPSLEALKKEGEAGRKIINQYTRYGTVLLALVQAYAISVGLQSGNGIVTNPGPFFIVS
SVITLVGGTMFLMWLGEQITARGIGNGISLIIFSGIVANLPHAISGTLELGRTGALSTGLILGVIVLAVALVAVIVFVER
AQRRLLIQYPKRQVGNRMFQGDTSHLPLKLNTAGVIPPIFASSLLLLPATVAGFANTTEMPAWATTVLNALGHGQPLYML
FYAALMAFFCFFYTAIVFNPKDTADQLKKHSGFIPGIRPGERTAEYIDYVLTRITVVGAIYIVLVCLLPEFLISATGVPF
YLGGTSLLIVVSVTLDTVAQIQGHLIAHQYEGLIKKSKLRGGKRNR

Sequences:

>Translated_446_residues
MASAAEQLVSNLNFSAFSKAEELKKRIWFTLGALLVYRFGTYIPLPGINPDALAQAFQQHSQGVLGLFNMFAGGAVGRMA
IFALGIMPYISASIIVQLMTSVVPSLEALKKEGEAGRKIINQYTRYGTVLLALVQAYAISVGLQSGNGIVTNPGPFFIVS
SVITLVGGTMFLMWLGEQITARGIGNGISLIIFSGIVANLPHAISGTLELGRTGALSTGLILGVIVLAVALVAVIVFVER
AQRRLLIQYPKRQVGNRMFQGDTSHLPLKLNTAGVIPPIFASSLLLLPATVAGFANTTEMPAWATTVLNALGHGQPLYML
FYAALMAFFCFFYTAIVFNPKDTADQLKKHSGFIPGIRPGERTAEYIDYVLTRITVVGAIYIVLVCLLPEFLISATGVPF
YLGGTSLLIVVSVTLDTVAQIQGHLIAHQYEGLIKKSKLRGGKRNR
>Mature_445_residues
ASAAEQLVSNLNFSAFSKAEELKKRIWFTLGALLVYRFGTYIPLPGINPDALAQAFQQHSQGVLGLFNMFAGGAVGRMAI
FALGIMPYISASIIVQLMTSVVPSLEALKKEGEAGRKIINQYTRYGTVLLALVQAYAISVGLQSGNGIVTNPGPFFIVSS
VITLVGGTMFLMWLGEQITARGIGNGISLIIFSGIVANLPHAISGTLELGRTGALSTGLILGVIVLAVALVAVIVFVERA
QRRLLIQYPKRQVGNRMFQGDTSHLPLKLNTAGVIPPIFASSLLLLPATVAGFANTTEMPAWATTVLNALGHGQPLYMLF
YAALMAFFCFFYTAIVFNPKDTADQLKKHSGFIPGIRPGERTAEYIDYVLTRITVVGAIYIVLVCLLPEFLISATGVPFY
LGGTSLLIVVSVTLDTVAQIQGHLIAHQYEGLIKKSKLRGGKRNR

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=426, Percent_Identity=56.1032863849765, Blast_Score=446, Evalue=1e-126,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 47939; Mature: 47808

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASAAEQLVSNLNFSAFSKAEELKKRIWFTLGALLVYRFGTYIPLPGINPDALAQAFQQH
CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
SQGVLGLFNMFAGGAVGRMAIFALGIMPYISASIIVQLMTSVVPSLEALKKEGEAGRKII
CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
NQYTRYGTVLLALVQAYAISVGLQSGNGIVTNPGPFFIVSSVITLVGGTMFLMWLGEQIT
HHHHHHHHHHHHHHHHHHHHHEEECCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ARGIGNGISLIIFSGIVANLPHAISGTLELGRTGALSTGLILGVIVLAVALVAVIVFVER
HHCCCCCHHHHHHHHHHHHCCHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AQRRLLIQYPKRQVGNRMFQGDTSHLPLKLNTAGVIPPIFASSLLLLPATVAGFANTTEM
HHHHHHHHCCHHHHCCHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
PAWATTVLNALGHGQPLYMLFYAALMAFFCFFYTAIVFNPKDTADQLKKHSGFIPGIRPG
CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCC
ERTAEYIDYVLTRITVVGAIYIVLVCLLPEFLISATGVPFYLGGTSLLIVVSVTLDTVAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEHHHHHHHHHHHH
IQGHLIAHQYEGLIKKSKLRGGKRNR
HHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
ASAAEQLVSNLNFSAFSKAEELKKRIWFTLGALLVYRFGTYIPLPGINPDALAQAFQQH
CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
SQGVLGLFNMFAGGAVGRMAIFALGIMPYISASIIVQLMTSVVPSLEALKKEGEAGRKII
CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
NQYTRYGTVLLALVQAYAISVGLQSGNGIVTNPGPFFIVSSVITLVGGTMFLMWLGEQIT
HHHHHHHHHHHHHHHHHHHHHEEECCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ARGIGNGISLIIFSGIVANLPHAISGTLELGRTGALSTGLILGVIVLAVALVAVIVFVER
HHCCCCCHHHHHHHHHHHHCCHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AQRRLLIQYPKRQVGNRMFQGDTSHLPLKLNTAGVIPPIFASSLLLLPATVAGFANTTEM
HHHHHHHHCCHHHHCCHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
PAWATTVLNALGHGQPLYMLFYAALMAFFCFFYTAIVFNPKDTADQLKKHSGFIPGIRPG
CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCC
ERTAEYIDYVLTRITVVGAIYIVLVCLLPEFLISATGVPFYLGGTSLLIVVSVTLDTVAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEHHHHHHHHHHHH
IQGHLIAHQYEGLIKKSKLRGGKRNR
HHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]