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The map label for this gene is yiaD [H]

Identifier: 23502081

GI number: 23502081

Start: 1181580

End: 1182242

Strand: Reverse

Name: yiaD [H]

Synonym: BR1204

Alternate gene names: 23502081

Gene position: 1182242-1181580 (Counterclockwise)

Preceding gene: 23502082

Following gene: 23502080

Centisome position: 56.09

GC content: 59.58

Gene sequence:

>663_bases
ATGCTGAAGAAAACCGGTATTGCCCTGATCTGTGCCACATTTCTGGCAGGGTGCACCACGGACCCATATACGGGCCAGCA
AAAAGTATCCAATACGACGGGCGGCGCGGCCATCGGCGCGGCTGTCGGTGCCTTGGGAGGCCTCATGGTGGGCGGTTCCA
GCCGCGCACAACGCAATGCCGTGCTGATTGGTGCCGGTATTGGCGCTCTTGGCGGTGGTCTCATCGGTAACTACATGGAC
CGCCAGGAGGCTGAATTGCGCGCGCAATTGCAGGGCACGGGCGTTTCCGTTACCCGTAACGGCGACAGAATTATCCTGAA
CATGCCGTCGAACATTACTTTCGATACGGATCAGGATCAGGTCAAGAGCCAGTTCTACCCGACGCTCAACTCGGTGGCTA
TCGTCCTGCGCAAGTTCGACAAGACGCTCGTGGATGTTTACGGCTTCACCGATTCAACCGGAAGCGCCAGCTACAACCAG
GCCCTGTCGCAGCGTCGCGCCGCTTCGGTGGCAAGTTATCTCGATTCGCAGGGCATCGACCCCCGCCGCTTTGCCGTTAT
CGGTTATGGTGCAAGCCAGCCTATTGCCAGCAACGCGACGCCGGAAGGCCGTGCACAGAACCGCCGCGTGGAAATTCAGA
TTTCGCCGCTACGCGGAGCCTGA

Upstream 100 bases:

>100_bases
GAGGCTTCAGTTAAAGACGGCCATGGTGTGAATGAGCCACCATCCGGCCTTATTCGCAACTATCATGCGCGCGGAATCGC
AAATTGAGGATAACCATTTC

Downstream 100 bases:

>100_bases
CCGGAGCAGAGCGGTTCCTGTTTTAACGGAATTGAATGCTCTATTGCGAAACATCCAATGCCAATATGGCAGGCGCAGCC
CTCTTATATCGGGGCTGCGC

Product: OmpA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MLKKTGIALICATFLAGCTTDPYTGQQKVSNTTGGAAIGAAVGALGGLMVGGSSRAQRNAVLIGAGIGALGGGLIGNYMD
RQEAELRAQLQGTGVSVTRNGDRIILNMPSNITFDTDQDQVKSQFYPTLNSVAIVLRKFDKTLVDVYGFTDSTGSASYNQ
ALSQRRAASVASYLDSQGIDPRRFAVIGYGASQPIASNATPEGRAQNRRVEIQISPLRGA

Sequences:

>Translated_220_residues
MLKKTGIALICATFLAGCTTDPYTGQQKVSNTTGGAAIGAAVGALGGLMVGGSSRAQRNAVLIGAGIGALGGGLIGNYMD
RQEAELRAQLQGTGVSVTRNGDRIILNMPSNITFDTDQDQVKSQFYPTLNSVAIVLRKFDKTLVDVYGFTDSTGSASYNQ
ALSQRRAASVASYLDSQGIDPRRFAVIGYGASQPIASNATPEGRAQNRRVEIQISPLRGA
>Mature_220_residues
MLKKTGIALICATFLAGCTTDPYTGQQKVSNTTGGAAIGAAVGALGGLMVGGSSRAQRNAVLIGAGIGALGGGLIGNYMD
RQEAELRAQLQGTGVSVTRNGDRIILNMPSNITFDTDQDQVKSQFYPTLNSVAIVLRKFDKTLVDVYGFTDSTGSASYNQ
ALSQRRAASVASYLDSQGIDPRRFAVIGYGASQPIASNATPEGRAQNRRVEIQISPLRGA

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=209, Percent_Identity=52.1531100478469, Blast_Score=179, Evalue=1e-46,
Organism=Escherichia coli, GI1787191, Length=124, Percent_Identity=32.258064516129, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 22964; Mature: 22964

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKKTGIALICATFLAGCTTDPYTGQQKVSNTTGGAAIGAAVGALGGLMVGGSSRAQRNA
CCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHEEECCCCCCCCCE
VLIGAGIGALGGGLIGNYMDRQEAELRAQLQGTGVSVTRNGDRIILNMPSNITFDTDQDQ
EEEECCHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCCEECCCHHH
VKSQFYPTLNSVAIVLRKFDKTLVDVYGFTDSTGSASYNQALSQRRAASVASYLDSQGID
HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
PRRFAVIGYGASQPIASNATPEGRAQNRRVEIQISPLRGA
CCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC
>Mature Secondary Structure
MLKKTGIALICATFLAGCTTDPYTGQQKVSNTTGGAAIGAAVGALGGLMVGGSSRAQRNA
CCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHEEECCCCCCCCCE
VLIGAGIGALGGGLIGNYMDRQEAELRAQLQGTGVSVTRNGDRIILNMPSNITFDTDQDQ
EEEECCHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCCEECCCHHH
VKSQFYPTLNSVAIVLRKFDKTLVDVYGFTDSTGSASYNQALSQRRAASVASYLDSQGID
HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
PRRFAVIGYGASQPIASNATPEGRAQNRRVEIQISPLRGA
CCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]