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The map label for this gene is 23502065

Identifier: 23502065

GI number: 23502065

Start: 1160335

End: 1161747

Strand: Reverse

Name: 23502065

Synonym: BR1187

Alternate gene names: NA

Gene position: 1161747-1160335 (Counterclockwise)

Preceding gene: 23502068

Following gene: 23502062

Centisome position: 55.12

GC content: 57.96

Gene sequence:

>1413_bases
ATGGCACCTCGAAAACTCTATATCGGCCGGAAAATCCGGGAAATCCGCGAACAGCACCGCGCCACGCAGTCCGGCTTTGC
CGAGCGGCTGGGCATTTCAACCAGCTATCTCAACCAGATCGAGAATAATCAGCGGCCTGTTTCCGCCGCCGTGCTGCTTG
CCTTGGCGGAAAATTACCAGATCGATATCGGCGCAATTTCTCTTGGCGACGACGATCGACTGCTTTCGGCGGTCTCGGAG
GCGCTGGCCGATCCGGTGTTCGATAATTACAAGCCGAGCTTGCAGGAAATGAAGCTGATTACACAGAATGCGCCGGGACT
TGCCCATGCGCTGATCGCCTGCCATCAGGCATATCGGCGCAATAGCGAGCAGCTTGCAAGTCTCGATAACCAGTTGGGCC
GCGCGCCGTCGACTGCGGAACCCGCGCCTTATGAGGAAGTGCGCGACTTCTTTCACTTTATTGATAATTATGTCCATGAG
CTTGATATTGCAGCCGAAAAACTGGCTGCTGATCTGGATATTCCGGGGCGGGATATTGGCGTTGCGCTGCCGCAATATAT
GGAGGATCGCCATCGCGTGCGCATCGCCCGTGCAGGCGCGGAGGAAGCTGTACTGCGCCGTTTCGATGCGCATACGCGCG
TACTTTATCTCAATCCCTATTCACCTGCCACTACGCGCAATTTCCAGATCGCCTTCCAGATCGCAGAACTGGAAATGGAA
TCCCTTGTGACAGCGATTGCCAGACAGGCGGATTTTCGCTCTGCCGAGGCGGTGGAGATCTGCAAGATCGGGTTGCGAAA
CTATTTCGCTGGCGCGCTGGTGCTTCCCTACCAGACTTTTCTGGCGGCTGCGAAAGAGCTGCGCCATGATCTTGAGCTGC
TTGCCTCGCGCTTTGGCGCAAGTCTGGAGCAGGTGGCGCACAGGCTCAGCACCTTGCAGCGTTCCGGCCAGCGCGGTGTG
CCGGTTTTCTTTGCGCGGGTGGACAGGGCCGGAAACATCACCAAACGCCACAGCGCAGCCAAGCTGCAATTTGCCCGTTA
TGGCGCGGCTTGTCCCTTGTGGAATGTGCACCAGGCCTTTGAGACGCCGGGGTGGATCATCCGCCAGCTTGCCGAAACGC
CGGATGGCGCGCGCTATCTTTGTATTGCGACCGAACTGACAAAAAGCGAGGGCGGCTTTAAGGCGCCGCAGCGCCGTTAC
GCCATCGCGCTCGGTTGTGAAGTCGCCTATGCGCAGGATTTCGTTTATGCCGATGGGCTGGATATCACCATGCGGTCGGC
TTTCGATCCGATTGGCGTTTCGTGCCGTATCTGCGAACGTGCCGAATGTGTGCAGCGTGCCATTCCGCCGCTTAACAGCA
GGCTGGCGGTCGACCATGACCGCCGGGGCATTCTGCCTTATCGATTGCTGTAA

Upstream 100 bases:

>100_bases
TTCCGCCCCTTACTTAAAATCGCGGGAAGCCCCGGAAAAGCTTGAAAAGGTGCTATTGTGTAAGATATAAATTTGCAAAT
AGCGAAATGCGAATTTGCAA

Downstream 100 bases:

>100_bases
AATCAGAAACCGGCATGGTCCTTGAGGAACTCAGCCTCCTCTGGGGTCGTGTCACGGCCCAGCACCTGATTGCGATGGGG
AAAACGCCCGAAACGTTCGA

Product: Cro/CI family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 470; Mature: 469

Protein sequence:

>470_residues
MAPRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIDIGAISLGDDDRLLSAVSE
ALADPVFDNYKPSLQEMKLITQNAPGLAHALIACHQAYRRNSEQLASLDNQLGRAPSTAEPAPYEEVRDFFHFIDNYVHE
LDIAAEKLAADLDIPGRDIGVALPQYMEDRHRVRIARAGAEEAVLRRFDAHTRVLYLNPYSPATTRNFQIAFQIAELEME
SLVTAIARQADFRSAEAVEICKIGLRNYFAGALVLPYQTFLAAAKELRHDLELLASRFGASLEQVAHRLSTLQRSGQRGV
PVFFARVDRAGNITKRHSAAKLQFARYGAACPLWNVHQAFETPGWIIRQLAETPDGARYLCIATELTKSEGGFKAPQRRY
AIALGCEVAYAQDFVYADGLDITMRSAFDPIGVSCRICERAECVQRAIPPLNSRLAVDHDRRGILPYRLL

Sequences:

>Translated_470_residues
MAPRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIDIGAISLGDDDRLLSAVSE
ALADPVFDNYKPSLQEMKLITQNAPGLAHALIACHQAYRRNSEQLASLDNQLGRAPSTAEPAPYEEVRDFFHFIDNYVHE
LDIAAEKLAADLDIPGRDIGVALPQYMEDRHRVRIARAGAEEAVLRRFDAHTRVLYLNPYSPATTRNFQIAFQIAELEME
SLVTAIARQADFRSAEAVEICKIGLRNYFAGALVLPYQTFLAAAKELRHDLELLASRFGASLEQVAHRLSTLQRSGQRGV
PVFFARVDRAGNITKRHSAAKLQFARYGAACPLWNVHQAFETPGWIIRQLAETPDGARYLCIATELTKSEGGFKAPQRRY
AIALGCEVAYAQDFVYADGLDITMRSAFDPIGVSCRICERAECVQRAIPPLNSRLAVDHDRRGILPYRLL
>Mature_469_residues
APRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIDIGAISLGDDDRLLSAVSEA
LADPVFDNYKPSLQEMKLITQNAPGLAHALIACHQAYRRNSEQLASLDNQLGRAPSTAEPAPYEEVRDFFHFIDNYVHEL
DIAAEKLAADLDIPGRDIGVALPQYMEDRHRVRIARAGAEEAVLRRFDAHTRVLYLNPYSPATTRNFQIAFQIAELEMES
LVTAIARQADFRSAEAVEICKIGLRNYFAGALVLPYQTFLAAAKELRHDLELLASRFGASLEQVAHRLSTLQRSGQRGVP
VFFARVDRAGNITKRHSAAKLQFARYGAACPLWNVHQAFETPGWIIRQLAETPDGARYLCIATELTKSEGGFKAPQRRYA
IALGCEVAYAQDFVYADGLDITMRSAFDPIGVSCRICERAECVQRAIPPLNSRLAVDHDRRGILPYRLL

Specific function: Unknown

COG id: COG3800

COG function: function code R; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018653
- InterPro:   IPR010359
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF09856 DUF2083; PF06114 DUF955; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 52521; Mature: 52390

Theoretical pI: Translated: 7.56; Mature: 7.56

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHCCCE
IDIGAISLGDDDRLLSAVSEALADPVFDNYKPSLQEMKLITQNAPGLAHALIACHQAYRR
EEEEEEEECCHHHHHHHHHHHHHCHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHC
NSEQLASLDNQLGRAPSTAEPAPYEEVRDFFHFIDNYVHELDIAAEKLAADLDIPGRDIG
CHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
VALPQYMEDRHRVRIARAGAEEAVLRRFDAHTRVLYLNPYSPATTRNFQIAFQIAELEME
HHCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEEHHHHHH
SLVTAIARQADFRSAEAVEICKIGLRNYFAGALVLPYQTFLAAAKELRHDLELLASRFGA
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SLEQVAHRLSTLQRSGQRGVPVFFARVDRAGNITKRHSAAKLQFARYGAACPLWNVHQAF
HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHH
ETPGWIIRQLAETPDGARYLCIATELTKSEGGFKAPQRRYAIALGCEVAYAQDFVYADGL
CCHHHHHHHHHHCCCCCEEEEEEEEHHCCCCCCCCCHHHEEEEEECCHHHHHCCCEECCC
DITMRSAFDPIGVSCRICERAECVQRAIPPLNSRLAVDHDRRGILPYRLL
CEEHHHCCCCCCCEEHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCC
>Mature Secondary Structure 
APRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHCCCE
IDIGAISLGDDDRLLSAVSEALADPVFDNYKPSLQEMKLITQNAPGLAHALIACHQAYRR
EEEEEEEECCHHHHHHHHHHHHHCHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHC
NSEQLASLDNQLGRAPSTAEPAPYEEVRDFFHFIDNYVHELDIAAEKLAADLDIPGRDIG
CHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
VALPQYMEDRHRVRIARAGAEEAVLRRFDAHTRVLYLNPYSPATTRNFQIAFQIAELEME
HHCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEEHHHHHH
SLVTAIARQADFRSAEAVEICKIGLRNYFAGALVLPYQTFLAAAKELRHDLELLASRFGA
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SLEQVAHRLSTLQRSGQRGVPVFFARVDRAGNITKRHSAAKLQFARYGAACPLWNVHQAF
HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHH
ETPGWIIRQLAETPDGARYLCIATELTKSEGGFKAPQRRYAIALGCEVAYAQDFVYADGL
CCHHHHHHHHHHCCCCCEEEEEEEEHHCCCCCCCCCHHHEEEEEECCHHHHHCCCEECCC
DITMRSAFDPIGVSCRICERAECVQRAIPPLNSRLAVDHDRRGILPYRLL
CEEHHHCCCCCCCEEHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]