Click here to switch to the map view.

The map label for this gene is ynhG [H]

Identifier: 23502014

GI number: 23502014

Start: 1113983

End: 1114696

Strand: Reverse

Name: ynhG [H]

Synonym: BR1136

Alternate gene names: 23502014

Gene position: 1114696-1113983 (Counterclockwise)

Preceding gene: 23502015

Following gene: 23502013

Centisome position: 52.88

GC content: 57.0

Gene sequence:

>714_bases
TTGGATTTTCGGGAACTGACCATGTTTTCACGCCGTATTCTGTTGGCTGGTATAGCAAGCCTTTGCATGGGAGCCGCCGC
TCCTGCCTTTGCTGCTTCGCCGGTCAATGCTGAAGCGCAGCTCGATGAAGCTGCGGCAAATGTCCAGAAGGTCGCTCTGG
CGAGCAACGCCAAGGCAAACCCGGACAAGCCGAAGAAGAAAACGGCTGCCAGGACCAACAATACGGCCAAGGCCAACAAA
TATAGCATCGATCCGAAGTTTCGTCCGCAGGACGTGACCTTCACCGGCTACAAGCCCGGCACAATCGTGATCGATCCCAA
GAAGCGCTTCCTCTATCTGGTGGAAACTTCCACGACCGCGCGCCGCTATGGCATTGCCGTTGGCAAGCAGGGACTGGAAT
TTCAGGGCAAGGCCACCATCAGCGCCAAGCGCGAATGGCCGCGCTGGATTCCCACCAAGGAAATGATTGAGCGCGATCCG
GCCCATTATGGCCGCTTCAAGAACGGCATGGATGGTGGCCCGGGCAATCCGCTCGGCTCGCGTGCGATGTATCTCTTCCA
GGGCAACAAAGACACCTATATCCGCATCCACGGTACGGTGCAGCCATGGACCATCGGCAGCTCTGCCTCCAATGGCTGCT
TCCGCATGATCAACGAAGACGTGATGGATCTCTACGACCGCGTTACGCTTGGTACGGAAGTGGTTGTTCTGTAA

Upstream 100 bases:

>100_bases
ATTGCTTGAGTGCTGGAGCGAATTGAGATGCTCCCAAGTTTACAGTATGCAAAGCGTAAGCCTGAACGCAGGGGTTGCGG
CAGGTATTTTCCGCTCGTGC

Downstream 100 bases:

>100_bases
ACCGGGAATTCCTGTATGGGATCGGCCGGGCTCACGGGCCTGGCCTTTTCTTTTGCCCAACCTTCAGAATGCGGAAACTG
TGGATTTCCAGCTTCGCCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MDFRELTMFSRRILLAGIASLCMGAAAPAFAASPVNAEAQLDEAAANVQKVALASNAKANPDKPKKKTAARTNNTAKANK
YSIDPKFRPQDVTFTGYKPGTIVIDPKKRFLYLVETSTTARRYGIAVGKQGLEFQGKATISAKREWPRWIPTKEMIERDP
AHYGRFKNGMDGGPGNPLGSRAMYLFQGNKDTYIRIHGTVQPWTIGSSASNGCFRMINEDVMDLYDRVTLGTEVVVL

Sequences:

>Translated_237_residues
MDFRELTMFSRRILLAGIASLCMGAAAPAFAASPVNAEAQLDEAAANVQKVALASNAKANPDKPKKKTAARTNNTAKANK
YSIDPKFRPQDVTFTGYKPGTIVIDPKKRFLYLVETSTTARRYGIAVGKQGLEFQGKATISAKREWPRWIPTKEMIERDP
AHYGRFKNGMDGGPGNPLGSRAMYLFQGNKDTYIRIHGTVQPWTIGSSASNGCFRMINEDVMDLYDRVTLGTEVVVL
>Mature_237_residues
MDFRELTMFSRRILLAGIASLCMGAAAPAFAASPVNAEAQLDEAAANVQKVALASNAKANPDKPKKKTAARTNNTAKANK
YSIDPKFRPQDVTFTGYKPGTIVIDPKKRFLYLVETSTTARRYGIAVGKQGLEFQGKATISAKREWPRWIPTKEMIERDP
AHYGRFKNGMDGGPGNPLGSRAMYLFQGNKDTYIRIHGTVQPWTIGSSASNGCFRMINEDVMDLYDRVTLGTEVVVL

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1787968, Length=139, Percent_Identity=34.5323741007194, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788299, Length=141, Percent_Identity=31.9148936170213, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 26083; Mature: 26083

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFRELTMFSRRILLAGIASLCMGAAAPAFAASPVNAEAQLDEAAANVQKVALASNAKAN
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
PDKPKKKTAARTNNTAKANKYSIDPKFRPQDVTFTGYKPGTIVIDPKKRFLYLVETSTTA
CCCCCHHHHHCCCCCCCCCEEECCCCCCCCCEEECCCCCCEEEECCCCEEEEEEECCCCH
RRYGIAVGKQGLEFQGKATISAKREWPRWIPTKEMIERDPAHYGRFKNGMDGGPGNPLGS
HHHHHEECCCCCCCCCCEEEEECCCCCCCCCCHHHHHCCCHHHHHCCCCCCCCCCCCCCC
RAMYLFQGNKDTYIRIHGTVQPWTIGSSASNGCFRMINEDVMDLYDRVTLGTEVVVL
CEEEEEECCCCEEEEEECCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEC
>Mature Secondary Structure
MDFRELTMFSRRILLAGIASLCMGAAAPAFAASPVNAEAQLDEAAANVQKVALASNAKAN
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
PDKPKKKTAARTNNTAKANKYSIDPKFRPQDVTFTGYKPGTIVIDPKKRFLYLVETSTTA
CCCCCHHHHHCCCCCCCCCEEECCCCCCCCCEEECCCCCCEEEECCCCEEEEEEECCCCH
RRYGIAVGKQGLEFQGKATISAKREWPRWIPTKEMIERDPAHYGRFKNGMDGGPGNPLGS
HHHHHEECCCCCCCCCCEEEEECCCCCCCCCCHHHHHCCCHHHHHCCCCCCCCCCCCCCC
RAMYLFQGNKDTYIRIHGTVQPWTIGSSASNGCFRMINEDVMDLYDRVTLGTEVVVL
CEEEEEECCCCEEEEEECCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 9097039 [H]