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The map label for this gene is ntrY [H]

Identifier: 23501994

GI number: 23501994

Start: 1092085

End: 1094409

Strand: Reverse

Name: ntrY [H]

Synonym: BR1116

Alternate gene names: 23501994

Gene position: 1094409-1092085 (Counterclockwise)

Preceding gene: 23501995

Following gene: 23501993

Centisome position: 51.92

GC content: 57.16

Gene sequence:

>2325_bases
ATGCGTTGCATAGATGCAACGCTATTGGTTATTATGGTTAACATGAACAGGGCGAATCTGACGACCGACATGAATGGGAC
GAGGCAATCATCGCAAGATGAGGGGCAGGGTGAGGGGCGCAGGCTTCTCGCCTTACCGGGTATTATTACCGTCGTTTCGG
CGCTGGTCACAGCTTCGTTTTCCTTCGCGATCCTGATCGGTATTACGCCAATCACCCCCGACCGCACGGTTACACTGGCG
CTGGTGATTATCAATGTCGCGTTGATTTTGTTTCTGATCCTGCTGATCTGCCGCGAGGTCTATCGCATCATAACGGCGCG
CAGGCTGGGCAAGGCCGCGTCGCGCCTGCATGTGCGCATTGTAGCCCTGTTTTCGCTGATTGCCGCCATTCCGGCAATCG
TGGTGGCAATTGTCGCTTCCGTGACCCTCAATCTGGGCCTTGATCGCTGGTTCGACCAGAATACACGCGACATCATCAGT
TCATCCCAGAATTTCTATACAGCCTATCTTCAGGAAACCGCGTTGAACCTCCAGAGCACGTCCTATTCGATGTTGCAGGA
TCTGGATGCGCAGCGTGCCATTTATAGCCTCGACCGGAACGGTTTCATCCAGTTGATGACATTGCAGGTGCGTGGGCGCG
CCTTGCTGGGCGCATTTCTGGTGCGTGATAATGGCGATGTCGTCGTGCAGAGCGATACGGGCATGGAAAGCCATCTGCCG
CCGCCGACGAAGGATTCGCTTGAAAAGGCACCGGACGGAAAGCCTGTCATCATCCCGCCGGGAAACACCAATTTCGTCGG
TGCACTCATCAAGATGCGCGAAATTCCCGACATGTATCTTTATACGGTGCGTTCGGTTCCGCCGCAAATTCTTGATGCCA
TCAATCTGATGAATGCCAATGCCAGGCGCTATCAGGAAATGGATGCGAACCGCATTCCGACGCAGATTGCTTTCGCTTTG
CTCTATTTCGGCCTGACGCTGATCGTGCTTCTGTCGGCCATCTGGACGGGCATTGCCGTTGCAGACCGGCTGGTGCGGCC
AATCCGGCTGCTGATCGGCGCATCGGACGATGTGGCTGCCGGCAATCTTGATGTTTCGGTGCCGGTGCGCTCGTCCGATG
GCGATGTGGGGGCGCTGTCGGGTACTTTCAACAACATGGTTGCCGAGCTGAAAAGCCAGCGCAACGAACTTATTTCCGCC
AAGGACCAGATCGATGAGCGCCGCCGCTTCTCCGAAGCCGTGCTTTCGGGTGTGACGGCAGGGGTTATCGGTATTGAGAA
TGACGGGTCGATTTCGATCCTCAACCGCTCTGCGGAGCATATGTTTGGCGTAACGTCGGAAGATGCGGTCGGGAAAAGCC
TTACCAGCATCGCGCCGGAGGTCGGGCAGGCTTTCGAGGTGGCGCGCGCCACGGGGCGAACCGTGCACCGCGAGCAGGTG
AGCATGGCGCGCGGCGGCGGTAGCCGCAGCTTCAATGTGCAGGTAACGGTCGAGGATGCCGAATCCGAGGATCACTCCTA
TGTGGTGACGGTGGACGACATCACCGATCTGGTGCAGGCGCAACGTTCTTCCGCATGGGCGGATGTGGCGCGGCGCATCG
CGCATGAAATCAAGAATCCGCTGACGCCGATCCAGCTTTCGGCAGAGCGCATCCGCCGCCGGTATGGCAAGGTCATCACG
GAGGATCGCGAGGTTTTCGACCAGTGCACGGACACCATCATTCGTCAGGTCGGCGATATTGGCCGCATGGTCGATGAGTT
CTCCGCTTTTGCGCGTATGCCCAAGCCGGAAATGCGGCATATGGACCTGCGCGAAGCATTGCGTGAAGCCTCGTTCCTGA
TTGAAGTCAGCCGCAGCGACATTCATTTCGACAATGATTTCGGTTCGGAAAAGCTGATTGGATCGTTCGATAGCCGCCTG
ATCGGGCAGGCCTTCGGCAATGTCATCAAGAATGCCAGCGAGGCCATTGACGCGGTTGCGAAGGAAGAGCGCGGCGAGGG
GCATATCCGCATTCACGCCTACAGGGCGGATGGGCAACTGGTGGTCGATGTGATCGACAACGGCAAGGGCTTGCCCGGCG
ATGATCGCCAGAAACTGCTGGAACCCTATATGACGACCCGCGAAAAGGGAACGGGCCTTGGCCTCGCAATCGTTCGCAAG
ATTGTTGAAGATCATGGCGGTAATCTTGAATTGCATGATGCGCCCGCGGATTTTCACGCAGGCCGGGGCGCAATGATACG
TATGGTCTTTCCCGAGGATCCCCCCATTCCATCCGATGCGGATTCGGGAAATGACGAAAAGCACACAGCTGGACAGGTGA
TTTGA

Upstream 100 bases:

>100_bases
CGGCGGTTAGCACTACAGTTGCATTCTTCGTGATGCCGGGCTGCAAAGATCTGCTGCCGGGAATGCTTTAATCACAAGCA
ATCGTTGCATTTTCGCCACA

Downstream 100 bases:

>100_bases
TATGGCGGCCGATATTCTTGTTGTTGATGACGAAGTGGATATCCGGGATCTTGTTGCTGGTATTCTGAGCGATGAAGGCC
ATGAAACACGCACCGCTTTC

Product: nitrogen regulation protein NtrY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 774; Mature: 774

Protein sequence:

>774_residues
MRCIDATLLVIMVNMNRANLTTDMNGTRQSSQDEGQGEGRRLLALPGIITVVSALVTASFSFAILIGITPITPDRTVTLA
LVIINVALILFLILLICREVYRIITARRLGKAASRLHVRIVALFSLIAAIPAIVVAIVASVTLNLGLDRWFDQNTRDIIS
SSQNFYTAYLQETALNLQSTSYSMLQDLDAQRAIYSLDRNGFIQLMTLQVRGRALLGAFLVRDNGDVVVQSDTGMESHLP
PPTKDSLEKAPDGKPVIIPPGNTNFVGALIKMREIPDMYLYTVRSVPPQILDAINLMNANARRYQEMDANRIPTQIAFAL
LYFGLTLIVLLSAIWTGIAVADRLVRPIRLLIGASDDVAAGNLDVSVPVRSSDGDVGALSGTFNNMVAELKSQRNELISA
KDQIDERRRFSEAVLSGVTAGVIGIENDGSISILNRSAEHMFGVTSEDAVGKSLTSIAPEVGQAFEVARATGRTVHREQV
SMARGGGSRSFNVQVTVEDAESEDHSYVVTVDDITDLVQAQRSSAWADVARRIAHEIKNPLTPIQLSAERIRRRYGKVIT
EDREVFDQCTDTIIRQVGDIGRMVDEFSAFARMPKPEMRHMDLREALREASFLIEVSRSDIHFDNDFGSEKLIGSFDSRL
IGQAFGNVIKNASEAIDAVAKEERGEGHIRIHAYRADGQLVVDVIDNGKGLPGDDRQKLLEPYMTTREKGTGLGLAIVRK
IVEDHGGNLELHDAPADFHAGRGAMIRMVFPEDPPIPSDADSGNDEKHTAGQVI

Sequences:

>Translated_774_residues
MRCIDATLLVIMVNMNRANLTTDMNGTRQSSQDEGQGEGRRLLALPGIITVVSALVTASFSFAILIGITPITPDRTVTLA
LVIINVALILFLILLICREVYRIITARRLGKAASRLHVRIVALFSLIAAIPAIVVAIVASVTLNLGLDRWFDQNTRDIIS
SSQNFYTAYLQETALNLQSTSYSMLQDLDAQRAIYSLDRNGFIQLMTLQVRGRALLGAFLVRDNGDVVVQSDTGMESHLP
PPTKDSLEKAPDGKPVIIPPGNTNFVGALIKMREIPDMYLYTVRSVPPQILDAINLMNANARRYQEMDANRIPTQIAFAL
LYFGLTLIVLLSAIWTGIAVADRLVRPIRLLIGASDDVAAGNLDVSVPVRSSDGDVGALSGTFNNMVAELKSQRNELISA
KDQIDERRRFSEAVLSGVTAGVIGIENDGSISILNRSAEHMFGVTSEDAVGKSLTSIAPEVGQAFEVARATGRTVHREQV
SMARGGGSRSFNVQVTVEDAESEDHSYVVTVDDITDLVQAQRSSAWADVARRIAHEIKNPLTPIQLSAERIRRRYGKVIT
EDREVFDQCTDTIIRQVGDIGRMVDEFSAFARMPKPEMRHMDLREALREASFLIEVSRSDIHFDNDFGSEKLIGSFDSRL
IGQAFGNVIKNASEAIDAVAKEERGEGHIRIHAYRADGQLVVDVIDNGKGLPGDDRQKLLEPYMTTREKGTGLGLAIVRK
IVEDHGGNLELHDAPADFHAGRGAMIRMVFPEDPPIPSDADSGNDEKHTAGQVI
>Mature_774_residues
MRCIDATLLVIMVNMNRANLTTDMNGTRQSSQDEGQGEGRRLLALPGIITVVSALVTASFSFAILIGITPITPDRTVTLA
LVIINVALILFLILLICREVYRIITARRLGKAASRLHVRIVALFSLIAAIPAIVVAIVASVTLNLGLDRWFDQNTRDIIS
SSQNFYTAYLQETALNLQSTSYSMLQDLDAQRAIYSLDRNGFIQLMTLQVRGRALLGAFLVRDNGDVVVQSDTGMESHLP
PPTKDSLEKAPDGKPVIIPPGNTNFVGALIKMREIPDMYLYTVRSVPPQILDAINLMNANARRYQEMDANRIPTQIAFAL
LYFGLTLIVLLSAIWTGIAVADRLVRPIRLLIGASDDVAAGNLDVSVPVRSSDGDVGALSGTFNNMVAELKSQRNELISA
KDQIDERRRFSEAVLSGVTAGVIGIENDGSISILNRSAEHMFGVTSEDAVGKSLTSIAPEVGQAFEVARATGRTVHREQV
SMARGGGSRSFNVQVTVEDAESEDHSYVVTVDDITDLVQAQRSSAWADVARRIAHEIKNPLTPIQLSAERIRRRYGKVIT
EDREVFDQCTDTIIRQVGDIGRMVDEFSAFARMPKPEMRHMDLREALREASFLIEVSRSDIHFDNDFGSEKLIGSFDSRL
IGQAFGNVIKNASEAIDAVAKEERGEGHIRIHAYRADGQLVVDVIDNGKGLPGDDRQKLLEPYMTTREKGTGLGLAIVRK
IVEDHGGNLELHDAPADFHAGRGAMIRMVFPEDPPIPSDADSGNDEKHTAGQVI

Specific function: Member of the two-component regulatory system ntrY/ntrX involved in nitrogen level control. Probably activates ntrX by phosphorylation [H]

COG id: COG5000

COG function: function code T; Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1788549, Length=404, Percent_Identity=22.5247524752475, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI1790300, Length=352, Percent_Identity=23.2954545454545, Blast_Score=74, Evalue=5e-14,
Organism=Escherichia coli, GI1790436, Length=241, Percent_Identity=24.0663900414938, Blast_Score=72, Evalue=2e-13,
Organism=Escherichia coli, GI1789808, Length=207, Percent_Identity=27.536231884058, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003660
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082
- InterPro:   IPR017232 [H]

Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 84728; Mature: 84728

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: PS50885 HAMP ; PS50112 PAS ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRCIDATLLVIMVNMNRANLTTDMNGTRQSSQDEGQGEGRRLLALPGIITVVSALVTASF
CCCHHHEEEEEEEECCCCCCEECCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHCC
SFAILIGITPITPDRTVTLALVIINVALILFLILLICREVYRIITARRLGKAASRLHVRI
CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VALFSLIAAIPAIVVAIVASVTLNLGLDRWFDQNTRDIISSSQNFYTAYLQETALNLQST
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHCCC
SYSMLQDLDAQRAIYSLDRNGFIQLMTLQVRGRALLGAFLVRDNGDVVVQSDTGMESHLP
HHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCHHHHEEEEEECCCCEEEEECCCCCCCCC
PPTKDSLEKAPDGKPVIIPPGNTNFVGALIKMREIPDMYLYTVRSVPPQILDAINLMNAN
CCCHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHCCC
ARRYQEMDANRIPTQIAFALLYFGLTLIVLLSAIWTGIAVADRLVRPIRLLIGASDDVAA
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
GNLDVSVPVRSSDGDVGALSGTFNNMVAELKSQRNELISAKDQIDERRRFSEAVLSGVTA
CCEEEEEEEECCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVIGIENDGSISILNRSAEHMFGVTSEDAVGKSLTSIAPEVGQAFEVARATGRTVHREQV
CEEEECCCCCEEEECCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
SMARGGGSRSFNVQVTVEDAESEDHSYVVTVDDITDLVQAQRSSAWADVARRIAHEIKNP
HHHCCCCCCEEEEEEEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LTPIQLSAERIRRRYGKVITEDREVFDQCTDTIIRQVGDIGRMVDEFSAFARMPKPEMRH
CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
MDLREALREASFLIEVSRSDIHFDNDFGSEKLIGSFDSRLIGQAFGNVIKNASEAIDAVA
HHHHHHHHHHHHEEEECCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KEERGEGHIRIHAYRADGQLVVDVIDNGKGLPGDDRQKLLEPYMTTREKGTGLGLAIVRK
HHCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHH
IVEDHGGNLELHDAPADFHAGRGAMIRMVFPEDPPIPSDADSGNDEKHTAGQVI
HHHHCCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRCIDATLLVIMVNMNRANLTTDMNGTRQSSQDEGQGEGRRLLALPGIITVVSALVTASF
CCCHHHEEEEEEEECCCCCCEECCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHCC
SFAILIGITPITPDRTVTLALVIINVALILFLILLICREVYRIITARRLGKAASRLHVRI
CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VALFSLIAAIPAIVVAIVASVTLNLGLDRWFDQNTRDIISSSQNFYTAYLQETALNLQST
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHCCC
SYSMLQDLDAQRAIYSLDRNGFIQLMTLQVRGRALLGAFLVRDNGDVVVQSDTGMESHLP
HHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCHHHHEEEEEECCCCEEEEECCCCCCCCC
PPTKDSLEKAPDGKPVIIPPGNTNFVGALIKMREIPDMYLYTVRSVPPQILDAINLMNAN
CCCHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHCCC
ARRYQEMDANRIPTQIAFALLYFGLTLIVLLSAIWTGIAVADRLVRPIRLLIGASDDVAA
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
GNLDVSVPVRSSDGDVGALSGTFNNMVAELKSQRNELISAKDQIDERRRFSEAVLSGVTA
CCEEEEEEEECCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVIGIENDGSISILNRSAEHMFGVTSEDAVGKSLTSIAPEVGQAFEVARATGRTVHREQV
CEEEECCCCCEEEECCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
SMARGGGSRSFNVQVTVEDAESEDHSYVVTVDDITDLVQAQRSSAWADVARRIAHEIKNP
HHHCCCCCCEEEEEEEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LTPIQLSAERIRRRYGKVITEDREVFDQCTDTIIRQVGDIGRMVDEFSAFARMPKPEMRH
CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
MDLREALREASFLIEVSRSDIHFDNDFGSEKLIGSFDSRLIGQAFGNVIKNASEAIDAVA
HHHHHHHHHHHHEEEECCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KEERGEGHIRIHAYRADGQLVVDVIDNGKGLPGDDRQKLLEPYMTTREKGTGLGLAIVRK
HHCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHH
IVEDHGGNLELHDAPADFHAGRGAMIRMVFPEDPPIPSDADSGNDEKHTAGQVI
HHHHCCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]